Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856186.1:43415866-43417473[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0066 1.4 12.0 2.8 1 23 181 204 181 205 0.94

2 12 4.8e-06 0.00099 21.8 1.7 1 23 207 229 207 229 0.98

3 12 4.2e-05 0.0086 18.9 0.4 3 23 237 257 236 257 0.98

4 12 5.3e-07 0.00011 24.9 0.9 1 23 263 285 263 285 0.98

5 12 3.7e-05 0.0076 19.1 0.4 1 23 291 313 291 313 0.98

6 12 0.00095 0.19 14.6 1.9 1 23 319 342 319 342 0.96

7 12 0.00082 0.17 14.8 3.4 1 23 348 372 348 372 0.98

8 12 2.6e-07 5.3e-05 25.8 0.9 2 23 375 396 375 396 0.97

9 12 0.048 9.8 9.3 0.0 5 22 406 423 404 423 0.93

10 12 3.7e-05 0.0075 19.1 2.0 1 23 430 453 430 453 0.96

11 12 0.0001 0.021 17.6 2.4 3 23 460 480 458 480 0.98

12 12 0.00083 0.17 14.8 3.4 1 23 486 508 486 508 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0066	1.4	12.0	2.8	1	23	181	204	181	205	0.94
2	12	4.8e-06	0.00099	21.8	1.7	1	23	207	229	207	229	0.98
3	12	4.2e-05	0.0086	18.9	0.4	3	23	237	257	236	257	0.98
4	12	5.3e-07	0.00011	24.9	0.9	1	23	263	285	263	285	0.98
5	12	3.7e-05	0.0076	19.1	0.4	1	23	291	313	291	313	0.98
6	12	0.00095	0.19	14.6	1.9	1	23	319	342	319	342	0.96
7	12	0.00082	0.17	14.8	3.4	1	23	348	372	348	372	0.98
8	12	2.6e-07	5.3e-05	25.8	0.9	2	23	375	396	375	396	0.97
9	12	0.048	9.8	9.3	0.0	5	22	406	423	404	423	0.93
10	12	3.7e-05	0.0075	19.1	2.0	1	23	430	453	430	453	0.96
11	12	0.0001	0.021	17.6	2.4	3	23	460	480	458	480	0.98
12	12	0.00083	0.17	14.8	3.4	1	23	486	508	486	508	0.98

Sequence Information

Coding Sequence: atggATTTTAATAATGCTAGTTTCGAGGAAGATATAGTTGAATCTAATGATGAAAGTTCTGTAGATAGAAATGAAATTGATTTGCATAATATTTGTCGAGTTTGTATGGAATCTCAAAATTCTCAATCTGAGATGATTAATTTATTCTCAGAACCTAAATCGCTTATGGGATATTCTATGTCTACATATAAAGATGTTATTTCTGATTTCGCAAATATTAATATTGATTTAACCGATCAACTGCCATTACAGATATGTGAAAATTGTGAATCGAATGTTAGTTTTGCGTATTCGTTTAAGAAACTATGCGAGGAATCAGATATCATATTGCGTCAACTTATATTAAAAAAGTCAAATAGTTTTGATGAAACAAAATCTACGAAACTTTCAACAGACCACCCAACTGTATCGCAACAGTTAATAATTCAACTGGAAATAGAACAACAAACTTTACACAATGAAATTGACAAAACTGTTtgtgaaaataaacaaacttcAACTCCGATTTTAAATGAAACCAGTGAGAAGATTGTAAACACATTCGAATGTATTCAATGTTCggaaatattttatcaaaaatatcgTTTGAATCGTCATATACGAATGACACATCATACATTTCGATGTAAATTTTGTGGACAAGATTTTTCACGTTCACAAACGTTGGCACGCCATCTTAAAATTCACcaagaagaaaaaacaaaactttgcaCTTTTTGTGGGAAAGGATTTTTGAGAGCGGATGATTTGAAAAGACATATCCGGATACATACAGGCGAGAAACCATATGTATGCGATTTATGCCCCAAAACTTATAAACAATCATCAGAATTGAAAGAACATCAAAAAAGTCATCTTGGTCTTAAATCTTATGTATGCACTATATGCGGCAAATCTTTATCAACCAGAAACGGATTTTATGTTCATCTTAAAGTTCATAAAGGTGAAAAAAATCATGAATGTAAATCATGCCAAAAACGTTTTGTGACAACCGGAGAGTTATATTCACACATAAATTATATTCATTCCAAACAAAAACCGTTTACATGTAAAAACGAAAACTGTCAAAAAACGTTCGTTACAAAATTTCGATTGAAATCACACGAACGTTCGCATACAGAAGAGTGTCCGGAGTGTGGTAAATGTTTTTCATCGTATTCCAGTTTGATTGAACATCAAAAAATACATACGGTCCAGAATGTTCAAGAACATGAGATTTGTGATAAAAAATTAGGTGACTCGCGAGCGTTAATAAAACACATGAGGATTCGCACAGGTGAACGACCATTCGAATGTAATATGTGCAACGAAAAATTTGTTTCGTCTAGTTCTTTATCCATTCACATAAAACATCGACACACAAAAAACGAGTTCGGgtgtaaaatttgtaaacaaaaattctCTCTTAATTCAAAGTTAAAATCACACATGAACTCTCATATCGAAAATCAACCATTTGTTTGTGAGCACTGTGGATCAATATTTACgcaatatcaaaattttgtaaatcaTTTATGCGTACATGAAGAAATAACAGAACTTAAAGTTTAG
Protein Sequence: MDFNNASFEEDIVESNDESSVDRNEIDLHNICRVCMESQNSQSEMINLFSEPKSLMGYSMSTYKDVISDFANINIDLTDQLPLQICENCESNVSFAYSFKKLCEESDIILRQLILKKSNSFDETKSTKLSTDHPTVSQQLIIQLEIEQQTLHNEIDKTVCENKQTSTPILNETSEKIVNTFECIQCSEIFYQKYRLNRHIRMTHHTFRCKFCGQDFSRSQTLARHLKIHQEEKTKLCTFCGKGFLRADDLKRHIRIHTGEKPYVCDLCPKTYKQSSELKEHQKSHLGLKSYVCTICGKSLSTRNGFYVHLKVHKGEKNHECKSCQKRFVTTGELYSHINYIHSKQKPFTCKNENCQKTFVTKFRLKSHERSHTEECPECGKCFSSYSSLIEHQKIHTVQNVQEHEICDKKLGDSRALIKHMRIRTGERPFECNMCNEKFVSSSSLSIHIKHRHTKNEFGCKICKQKFSLNSKLKSHMNSHIENQPFVCEHCGSIFTQYQNFVNHLCVHEEITELKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -