Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856187.1:211372058-211373995[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.6e-05 0.0073 19.1 0.7 1 23 232 254 232 254 0.98

2 11 0.0052 1.1 12.3 3.5 1 23 261 283 261 283 0.98

3 11 7.9e-06 0.0016 21.2 0.7 2 23 290 311 289 311 0.98

4 11 3.6e-05 0.0074 19.1 0.3 1 23 317 340 317 340 0.93

5 11 0.077 16 8.6 0.1 3 23 362 382 361 382 0.97

6 11 6.4e-06 0.0013 21.5 0.6 1 23 388 410 388 410 0.99

7 11 3.2e-05 0.0066 19.2 1.6 1 23 416 438 416 438 0.98

8 11 4.6e-07 9.3e-05 25.1 2.3 2 23 445 466 444 466 0.96

9 11 1e-05 0.0021 20.8 1.0 1 23 472 494 472 494 0.99

10 11 1.2e-05 0.0024 20.6 5.1 1 23 499 521 499 521 0.97

11 11 0.00076 0.16 14.9 1.6 1 23 527 549 527 549 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.6e-05	0.0073	19.1	0.7	1	23	232	254	232	254	0.98
2	11	0.0052	1.1	12.3	3.5	1	23	261	283	261	283	0.98
3	11	7.9e-06	0.0016	21.2	0.7	2	23	290	311	289	311	0.98
4	11	3.6e-05	0.0074	19.1	0.3	1	23	317	340	317	340	0.93
5	11	0.077	16	8.6	0.1	3	23	362	382	361	382	0.97
6	11	6.4e-06	0.0013	21.5	0.6	1	23	388	410	388	410	0.99
7	11	3.2e-05	0.0066	19.2	1.6	1	23	416	438	416	438	0.98
8	11	4.6e-07	9.3e-05	25.1	2.3	2	23	445	466	444	466	0.96
9	11	1e-05	0.0021	20.8	1.0	1	23	472	494	472	494	0.99
10	11	1.2e-05	0.0024	20.6	5.1	1	23	499	521	499	521	0.97
11	11	0.00076	0.16	14.9	1.6	1	23	527	549	527	549	0.99

Sequence Information

Coding Sequence: atgAAAGGACAAGCAGGAAATACATTACTATTAAAGTGTCGTACATGTATGGCGGAAACTATGGATCAAATTTcattattagaattaaaaaattttaatgaagaTTATTTAAGAATAGCcgatattttaaatatgttaacaaatatAGATTTTAACAGCGATCATCAACTGTTACCAACAAAGTTATGTGAAAAATGTGCAATCGAAGCGGAAAACGCGTTTGTTTTTCGTCAAAAATGTATCAACACCGAGCGGGAACTACAACGTTGTTTGAGCGTTATTGAAAACGACTTGAAAAATGTAAAAGCTGAGCCGATTATGGAAGAGTATTTGCTTCTGAATAATGACGAATTTTTGTTTGAGGATAATAACGAATGTGAATCGATAATCTCTCAGGAAGAAAAGGAGGAAATAATTCATGAAATTGATCTTAAGATTGATGATGTAAAAagggaatatttaataaatgttttaaaggAGGAAGAAATCATCAAAAATGATCAATtgaataataacaaaataatagtGAGCGATACATGCGTTCATGAAAATAATTCGAATGAGAGTGTGTGTAGTGAAGAGAACAACCTCGATGAGGATAAGAATGAAATATCTATATCCAATTTAAATCATCGAATAAACTTAACTGATAATTGTTCAAAAGTTAAGAAAATGAACAACCGTTTGCTTATATATAAATGCCCGACATGTGACAAAGGATTCGATCGTGATGACAAAATGAAAAGACACGCAAAAATCCATAATGTGCACGAACAGAAGTACTTTTGTGAATATTGTCGTAAAGGATACAAAATGCTACAAACGTATAAATCTCATATGAAAAGTCATGATccaaataatacaaataaatgttCTTACTGTAATAGTATATTCTCGACCGCTTATGAATTAGAAAGACATGTTAGGACACATACAGGTGAGAGACCATTTAAATGTGACGAATGTGATAAAGGGTTTGCACAAAGGAATGGTTTAGTGCGACATTTggtaaattttcataaaaaagatATCGGATATAGCGAAGGTTATGGCAAAACTCCGCACAAGAAGAAACCGTCTCTATGCGAAGTGTGTGGTGTCGAGAAAAAGAATGCATTTgcattaaaaattcatatgcgGCAACACACTGGTGAAAAGCCATACCgatgtgaaatttgttttaaaggtTTTGTTGTCCCATTTCAACTCAAAATGCACATGCGAAGCCATACTGGCGAGAAACCTCATCAATGTGATTTGTGTGAGAAATCATTTTCCCAACGAATTGGTTTGGATGTTCATCGAAGAACCCATACAGGAGAGAAACCGTGTATATGTGAAATTTGTGATAAAGCTTTTACAGTTCCATCACATTTAAAAATGCATATGAGAAGCCATACGGGAGAAAAACCATTTAAATGTGAAGTTTGCGATAAAGGATTCACTCAAAATACAATCTTACAGAATCACATGAAATCACACACTGGGAATACGTTTAATTGTGTCTTTTGTAAAAAGGGATTCAATCAAAAACATAACCTAAAGCGCCATATGAAAATACATACAGGTGAAAAACCTTACGAATGCAATATATGTAGTCGAAGATTTAGcgaaaaattatcaatgaaatATCATGTGCAAACACATAGTGGAGAAAAACCATATTCTAAATTAGCAGCACGATTAAAGGCCAAGAGTATgtgttaa
Protein Sequence: MKGQAGNTLLLKCRTCMAETMDQISLLELKNFNEDYLRIADILNMLTNIDFNSDHQLLPTKLCEKCAIEAENAFVFRQKCINTERELQRCLSVIENDLKNVKAEPIMEEYLLLNNDEFLFEDNNECESIISQEEKEEIIHEIDLKIDDVKREYLINVLKEEEIIKNDQLNNNKIIVSDTCVHENNSNESVCSEENNLDEDKNEISISNLNHRINLTDNCSKVKKMNNRLLIYKCPTCDKGFDRDDKMKRHAKIHNVHEQKYFCEYCRKGYKMLQTYKSHMKSHDPNNTNKCSYCNSIFSTAYELERHVRTHTGERPFKCDECDKGFAQRNGLVRHLVNFHKKDIGYSEGYGKTPHKKKPSLCEVCGVEKKNAFALKIHMRQHTGEKPYRCEICFKGFVVPFQLKMHMRSHTGEKPHQCDLCEKSFSQRIGLDVHRRTHTGEKPCICEICDKAFTVPSHLKMHMRSHTGEKPFKCEVCDKGFTQNTILQNHMKSHTGNTFNCVFCKKGFNQKHNLKRHMKIHTGEKPYECNICSRRFSEKLSMKYHVQTHSGEKPYSKLAARLKAKSMC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -