Dgla053205.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- -
- Assembly
- GCA_963693315.1
- Location
- OY856187.1:169410045-169413198[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 30 7.7 6.3 1 21 192 212 192 215 0.96 2 13 7.9 1.6e+03 2.3 1.2 2 16 219 231 218 239 0.72 3 13 0.41 84 6.3 4.7 2 23 265 287 264 287 0.96 4 13 0.027 5.6 10.0 2.6 1 21 334 354 334 355 0.95 5 13 3.5e-06 0.0007 22.3 1.5 1 23 363 385 363 385 0.97 6 13 4.6e-05 0.0093 18.8 0.7 1 23 390 412 390 412 0.95 7 13 1.5e-05 0.0031 20.3 0.3 1 23 418 440 418 440 0.99 8 13 8.8e-07 0.00018 24.2 0.7 1 23 446 468 446 468 0.95 9 13 1.9e-06 0.00038 23.1 0.1 1 23 474 496 474 496 0.99 10 13 3.6e-06 0.00073 22.3 0.3 1 23 502 524 502 524 0.98 11 13 0.00036 0.073 16.0 0.2 1 23 530 552 530 552 0.98 12 13 1.3e-05 0.0026 20.5 3.0 1 23 558 580 558 580 0.98 13 13 4.1e-05 0.0083 18.9 1.2 1 23 586 608 586 608 0.98
Sequence Information
- Coding Sequence
- atggTGTTATCGTTGAACAAGATATGCCGTACGTGCTTAATTGAAGCACCAGCATTACTTTCAATTTATGAAAAGCAAACTGATACAAATGGTGGTACGAATACTAAATCAGTTATGGAGATGTTGATGTCATTTACATCAGTTAAGATCGAAACAAATGGCGCTTTACCAGACTCTTTGTGTTTATCTTGTATTTCTGAAATAAACCGTGCCTATTCCTTTAAGGAAAAATGTGAACGATCTGACCTAACGCTTAAAGCCTATTTACACCAAATCATAAAAGAAGAACAGCTCGTGAAAAAAGAAACATCTGCAATAAATCCGAATTTGTCATTACTAGATCTTGGAGAAATAACTGAACTTCTAACGTCGCAAgaagcaattaaattaaatgagtGTAGTCTTACCGATAGTTCAGCAATCATAgcaataaatcaaaacaatcaaaacaTATTAACGGAAACAGGTCACCCGAATAACATGAATTACgaaatttcaaattcaaaacaagAATGCGAAGTTGAAGTTTTGGataaagaagatgaattggGATTAAATCTCTTTGTTTTGatatataaatgtaatttttgttcTTCTCATTTTGATGATAATTCAACGTTCAAAGAGCATATGATGTGTAATCATTCTGCTATGTATTGTGAGCTTTGCgatacttttttttatgattcctTTAAAgatcattttaaaaatgtacatgATTTTGAGGGTGAAGATGAAATATTACCtcaaaaacaaagtaaaaagGCATTAGGGAAAACGgaagttaatttaaaatgtaaactTTGTGATTCTGAATTTGGTCTTAAAAAACATTTGGATAAACATTTATTACGATGTCATAAAGTTAAGGATAATATAATTGAAAAACTGCAAGACActgttgaaaaaaataatgaaataaaattagataacGATAGAACAGCGAATATTGTTGACAATGGGCAAAATTTAGAAGGTATTATAGACAAAACATCGCCATTTAAATGTAGTAAATGCAATGCAAcatttgtaaaagaaaaatcatATCGATTGCATCATAATTCCAATAAATGTACCGAACTTTCATATCCATGTAAATTATGCAATAAGGTTTTTGCACATCGTAAAAATCTACAACAACATTTGCTAGCACACGAACAAACAAAGTTTCGTTGTAAAGAATGTTCTAAAGTATTCACATCCTCCGAGGATTTAGTTCTACATAACCAAGAACACGCTAGCTCCAAAAAATATCAGTGTGTGTATTGTGGGAAAGGCTTTAATATGATTTCAACATTAAAAGATCACGTGAGAATACATAATGGAGAAAAGCCGTTTTTGTGTTCTATATGTGGTAAAGGTTTCAGCCAGAGTACAAATTTAAGACAACACGTAATGCgacataataaaataaagcCATATAAGTGTGAAGTTTGTGAATATGCGTTCGTTAGTAAAGGAGAGTTAGAAGCACACTTAAGAAAGCATACCGGCGATCATCCGTTCGTATGTAATATTTGTGAAACTGGTTTCACAACATCAAGTGCATTGgtaaaacataaaagaatTCATACCGGGGAAAAACCATACGCTTGTGAATATTGTCCGATGCGATTTGCTGCAAATGGTGTACTAAAAAATCATCGGCGAACGCATACTGGCGAACGTCCGTTTGAATGTAAATTTTGTGATAGAAAATTTACACAGCGTAGTGATATGGTATCGCATACAAGAACTCATACAGGAGAACGTCCATATGCTTGTTCCGGTTGTGGGGTATCCTTTCATCAGTCAAACAAACTAAAAGCACATTTAAAATCTCACGAAGCATGtgacaaaaaattgacacaAACTGAAGGGTAA
- Protein Sequence
- MVLSLNKICRTCLIEAPALLSIYEKQTDTNGGTNTKSVMEMLMSFTSVKIETNGALPDSLCLSCISEINRAYSFKEKCERSDLTLKAYLHQIIKEEQLVKKETSAINPNLSLLDLGEITELLTSQEAIKLNECSLTDSSAIIAINQNNQNILTETGHPNNMNYEISNSKQECEVEVLDKEDELGLNLFVLIYKCNFCSSHFDDNSTFKEHMMCNHSAMYCELCDTFFYDSFKDHFKNVHDFEGEDEILPQKQSKKALGKTEVNLKCKLCDSEFGLKKHLDKHLLRCHKVKDNIIEKLQDTVEKNNEIKLDNDRTANIVDNGQNLEGIIDKTSPFKCSKCNATFVKEKSYRLHHNSNKCTELSYPCKLCNKVFAHRKNLQQHLLAHEQTKFRCKECSKVFTSSEDLVLHNQEHASSKKYQCVYCGKGFNMISTLKDHVRIHNGEKPFLCSICGKGFSQSTNLRQHVMRHNKIKPYKCEVCEYAFVSKGELEAHLRKHTGDHPFVCNICETGFTTSSALVKHKRIHTGEKPYACEYCPMRFAANGVLKNHRRTHTGERPFECKFCDRKFTQRSDMVSHTRTHTGERPYACSGCGVSFHQSNKLKAHLKSHEACDKKLTQTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -