Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856188.1:72957499-72968904[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.014 2.9 10.9 0.5 1 23 78 100 78 100 0.95

2 15 7e-05 0.014 18.2 1.3 3 23 107 127 105 127 0.98

3 15 5.7e-06 0.0012 21.6 0.2 1 23 133 155 133 155 0.99

4 15 0.0001 0.021 17.7 0.6 1 23 161 183 161 183 0.99

5 15 0.018 3.7 10.6 2.0 1 23 191 213 191 213 0.98

6 15 6.6e-06 0.0013 21.4 1.5 2 23 220 241 219 241 0.98

7 15 1.5 3e+02 4.6 0.4 1 9 247 255 247 258 0.93

8 15 4.1e-05 0.0084 18.9 1.1 3 23 709 729 707 729 0.95

9 15 0.0027 0.54 13.2 1.3 1 23 735 757 735 757 0.96

10 15 4e-05 0.0081 19.0 2.7 3 23 764 784 762 784 0.96

11 15 2.5e-06 0.00051 22.7 1.0 1 23 790 812 790 812 0.99

12 15 0.0031 0.62 13.0 0.4 1 23 818 840 818 840 0.96

13 15 3.9e-06 0.0008 22.1 3.9 1 23 848 870 848 870 0.98

14 15 0.00015 0.03 17.2 2.7 1 23 880 902 880 902 0.98

15 15 0.0002 0.04 16.8 6.1 1 23 908 931 908 931 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.014	2.9	10.9	0.5	1	23	78	100	78	100	0.95
2	15	7e-05	0.014	18.2	1.3	3	23	107	127	105	127	0.98
3	15	5.7e-06	0.0012	21.6	0.2	1	23	133	155	133	155	0.99
4	15	0.0001	0.021	17.7	0.6	1	23	161	183	161	183	0.99
5	15	0.018	3.7	10.6	2.0	1	23	191	213	191	213	0.98
6	15	6.6e-06	0.0013	21.4	1.5	2	23	220	241	219	241	0.98
7	15	1.5	3e+02	4.6	0.4	1	9	247	255	247	258	0.93
8	15	4.1e-05	0.0084	18.9	1.1	3	23	709	729	707	729	0.95
9	15	0.0027	0.54	13.2	1.3	1	23	735	757	735	757	0.96
10	15	4e-05	0.0081	19.0	2.7	3	23	764	784	762	784	0.96
11	15	2.5e-06	0.00051	22.7	1.0	1	23	790	812	790	812	0.99
12	15	0.0031	0.62	13.0	0.4	1	23	818	840	818	840	0.96
13	15	3.9e-06	0.0008	22.1	3.9	1	23	848	870	848	870	0.98
14	15	0.00015	0.03	17.2	2.7	1	23	880	902	880	902	0.98
15	15	0.0002	0.04	16.8	6.1	1	23	908	931	908	931	0.95

Sequence Information

Coding Sequence: ATGAATCTCAATTTAGTTTTGGATGACATGGATAGTAATAGTTACGAAGAGTCTATTGGTATTGATAATAATGAAAAGGATGTTTTACCAAAAGAAGGGAGTTATGTCAACACGATTAAATCCGAAacagtaaaacataaaaataaaaaaagcacatctccaatttttttaaaggtgTCCAAGAATTTTGAATTACCACGACATACAGAGATTCTTAAAGACACTTTTGATTATTTATGCAGTGTTTGCGGggaaagatttaaaattaaaactgtgtATCGCGATCATATGGTAAGGCACGACATTAGCCGTTTTGGTTGCACATATTGTAAAAAAGGTTTTGCTAGCAATTTCCAACTGAAATCACATTTACTAACCCATACAGGAGAAAAACCATTCAAATGTGAAGTATGTGGGGTGGCGTATAGTCAAAACGCTACTTTAAagATTCACTTAAGAAAACACACAGGAGAAAAACCATACCAATGTAAACTATGTGATGCTTCATTTGTGGCTTTCAGTTATCTCAGACGACATGAGCGCGTCCATCTTGATCCAAGTATACGACCATTTTCGTGTTTATTATGCATGAAAGATTTCAGAATGAAGGAGAAttacaaaaatcatttaaaagtacATTCAGGTGCAAAACGACAAAAATGTCCACATTGTGATAAAACATTTGCTTATCGAAAAGGATTGGTCGTGCATCTTCGTTCACATACTGGCGAAAAACCATATAAATGTAATATATGTGATAAGAGATGGCAAACGAAATTCAGCGAAGTTTCATCTTCGTCAGatcaaatacaaatacaacaaTCTCGAATTCAAGATACAACGAGAGATGCTAAAGTGTTGGAAGCTTTTAAAATTGGttctaaaactatcaaaaattgGCTTTCTGATTCGGGAATTACGCTGGATAGCGTTGATGAGGCATTGGCGGATGTCCAAGAAAAGCATGAGGTACATGATGATATCCAATCAACGTTGGGCGGTGGTAACACATTTAGTACAATTGATGATTCTATTCTGGAAAAAGAATTAGAGGAATTGTTATTAGAAGATGCCTTCCCTGATGTACTgtctgatattaataaaaacgacGGAAGTGAAAAGGAGAAACCAAAGGATGCAATATTAAATATGGATGACTCGATAGAACGTCGTATGAATGAATTAAGAATTGAGTTTGGTGatggatatggtggtcctggtggtcatggtggccatggtggtcatggttgtaatagtgatcatggtggtcatagtggtaatggtgatcacggtggtcacggtggtcatagcggtcatggtgttcattgtggtcatggtagtcatggtggtcatggtgatcatagtggtcatgatggtcatagtgctcatggtggtcatggtgatcacggtggtcatggtgttcacagtggtcatgatgttcatgttggtcatggtggtaatggtggtcatggtggtcatggtgataatggtggtcatggtgttcacggtggtcatggcggtcatgttggtcatggtggtcatagtggtcatggtggtcacggtggtcatgggggtcatggtggtcatgatggttatggtggtcacggtggccatggtgttcacggtggtcgTAATGctcatggtgttcacggtggtcatgttggtcataGTGATCATGGTGTTCATCGTGAAATTcaatttATTACAATAAAAGATAATCTTTCTCATAGAATTTGTGAATTCTGTATTGAAGAAATAATAAGATCATTTGTATTTCGCAAAAAATGTTACGATgcaagttttgttttaaaaatgaaaagagAAAATATAGATTTGAGATCAGAAGATTTGGATACGAGTTTTAGTTACGGAGATGGAAATGAAAGCGATACAGACCAAACAGAAGCTGCTGACCCTAGCAATAGTATTTTAAATTCGGATGTTAAGCCAAGAAATAATTACGATGAGTACATAATAGAGTATATAGATGATGCAAAAGAAGATATAAATATAGAACAATGCGATGAAAAATTAAACTTAGCCGAAACTAAGGAATCCACATTTGAAGATATGAAAGAAATTGCAAATGAAACAACAAGAAGAACcttaataagaaaaataatttgtcCAGTTTGTTCAAAGTCTTTTTCGCACTATTATAAGCTTAAACGACATGAAGAAATTCATAAGGACACATTtgattatttatgtaattattgtggtgaaaaactaaaaactaaaaacacaTATCGTGATCACCTGGCAAGACACGATACGGAACTCTACGGCTGCAAATATTGTGGTAAATGTTTCGCAAGCAATTATCAACTGAAATCACATTCAGTAACACATACAGGAGAGAAACcatttaaatgtaaaatatgtGGAGCTGCGTATAGTCAGAAAACTACTTTGAAgATTCACTTAAGAAAACATACAGGAGAAACACCATATAAATGTAAATTATGTGACGAAGAATTTATAGCAGTGAGTTATCTGAGAAAGCATGAAGTCCGACATTTAGGTCCAAATGAAAGACCATTCACTTGTTCAATATGTACGAAAAGTTTCCGAAcgaaagaaaattataataaacatttcagAATACATTCAGGAAAAAGACCGGGTACACCTACACACAAATGTCCgcattgtaataaaatataCGCTTATCGAAGAGGGTTGGTTGTCCATCTTCGTTCACATACTGGCGTTAAACCACATATATGTAATATATGTGATAAGGCATTTAGCCAAAAGCATTGCCTGCAAAGTCATTTATCTAAATTACATCGAGAAGAAATTGAAAcattaaattcataa
Protein Sequence: MNLNLVLDDMDSNSYEESIGIDNNEKDVLPKEGSYVNTIKSETVKHKNKKSTSPIFLKVSKNFELPRHTEILKDTFDYLCSVCGERFKIKTVYRDHMVRHDISRFGCTYCKKGFASNFQLKSHLLTHTGEKPFKCEVCGVAYSQNATLKIHLRKHTGEKPYQCKLCDASFVAFSYLRRHERVHLDPSIRPFSCLLCMKDFRMKENYKNHLKVHSGAKRQKCPHCDKTFAYRKGLVVHLRSHTGEKPYKCNICDKRWQTKFSEVSSSSDQIQIQQSRIQDTTRDAKVLEAFKIGSKTIKNWLSDSGITLDSVDEALADVQEKHEVHDDIQSTLGGGNTFSTIDDSILEKELEELLLEDAFPDVLSDINKNDGSEKEKPKDAILNMDDSIERRMNELRIEFGDGYGGPGGHGGHGGHGCNSDHGGHSGNGDHGGHGGHSGHGVHCGHGSHGGHGDHSGHDGHSAHGGHGDHGGHGVHSGHDVHVGHGGNGGHGGHGDNGGHGVHGGHGGHVGHGGHSGHGGHGGHGGHGGHDGYGGHGGHGVHGGRNAHGVHGGHVGHSDHGVHREIQFITIKDNLSHRICEFCIEEIIRSFVFRKKCYDASFVLKMKRENIDLRSEDLDTSFSYGDGNESDTDQTEAADPSNSILNSDVKPRNNYDEYIIEYIDDAKEDINIEQCDEKLNLAETKESTFEDMKEIANETTRRTLIRKIICPVCSKSFSHYYKLKRHEEIHKDTFDYLCNYCGEKLKTKNTYRDHLARHDTELYGCKYCGKCFASNYQLKSHSVTHTGEKPFKCKICGAAYSQKTTLKIHLRKHTGETPYKCKLCDEEFIAVSYLRKHEVRHLGPNERPFTCSICTKSFRTKENYNKHFRIHSGKRPGTPTHKCPHCNKIYAYRRGLVVHLRSHTGVKPHICNICDKAFSQKHCLQSHLSKLHREEIETLNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -