Dgla050219.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- -
- Assembly
- GCA_963693315.1
- Location
- OY856187.1:129749187-129772101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00029 0.059 16.2 6.7 1 23 230 252 230 252 0.98 2 17 6.5 1.3e+03 2.6 3.6 2 23 255 273 254 273 0.86 3 17 0.00012 0.025 17.4 0.8 1 23 279 301 279 301 0.97 4 17 7.4e-05 0.015 18.1 4.4 1 23 307 329 307 329 0.98 5 17 0.00013 0.027 17.3 0.8 1 23 335 357 335 357 0.99 6 17 0.0013 0.27 14.2 0.3 1 23 363 385 363 385 0.97 7 17 0.00041 0.083 15.8 1.5 1 23 391 414 391 414 0.98 8 17 0.0039 0.8 12.7 3.8 1 23 420 442 420 442 0.98 9 17 0.00021 0.042 16.7 3.4 1 23 696 718 696 718 0.98 10 17 0.011 2.3 11.2 0.5 3 23 722 739 721 739 0.95 11 17 4.8e-05 0.0098 18.7 0.1 1 23 745 767 745 767 0.98 12 17 1.9e-05 0.0039 20.0 2.8 1 23 773 795 773 795 0.98 13 17 1.8e-06 0.00036 23.2 0.6 1 23 801 823 801 823 0.99 14 17 7.8e-06 0.0016 21.2 0.3 1 23 829 851 829 851 0.98 15 17 0.00023 0.047 16.6 0.6 1 23 857 879 857 879 0.98 16 17 0.00014 0.029 17.2 3.8 1 23 885 907 885 907 0.99 17 17 1.5 3.1e+02 4.6 4.6 1 23 913 936 913 936 0.96
Sequence Information
- Coding Sequence
- ATGGAGGTGTACTCATTAAAGcaaaagatatttattgttaaaaCCTTCTATCAAAATGGTAATTCatttcaaaaagtaaaaaacgaTTTTGCTTGCGAATTTGAGAAAACAGAACTACCTACGGATAATGTTATTGTTGAATTATTGCAATCATTAGACAAATTTGGAAATACTACAGAAAAAgatgttgaaaataaaataaatagtcTATCTCTTCAAAGTTTAGAAAATTTggatatatttaaagaaatcaaaTGTGAAGAGATCCATGAGGATGAAAAATGGGATTTATTCACAGGAAAAGGTTTGCTTAAAGTCAAAACCGAACCAGAATTGTTATTGTCTACAGATTCAGTGGATGCATCTATTTTTCATAACAATACAGAAAACACTTTTCAACGCTTAGCTACCAATGAACATAAATTAGGTGATCAAGATTTTACGCCACATAGCTGTAACAAAGATCCTGATGAAGGCAGAATTGATCTAAACCCGTTAAATGAAACTTTCGAATTCAAAGATATCAAAGAGGAGTTTAATGATAGTGAAATAGATTTTGATTCCGATAAAATTGGTGATACACAAGTGAAGTGCAATGAAATAACAAATGAAGTGCAAGTTAAACAAAAATCGAAGTCGGCATCTAAAACTAAAGGAAAGAGAAAAAGTGCAAGGCctaaaaaaacttataaatgtgaaaaatgtaataaagattttaaaCACAGATTCAGCTTCATACGTCACCTTAAAAACCATGAAAAGTCATGTGAAATTTGTCATAAATATTATCGTGATTATAAAACACATATGAGTACTCATACAGGAGAGAAATCATTTCCGTGTGAAGAATGTGGCGTACAGTTTAAGACAAAAACTCACGTAAAAATGCACATGGTTGTACATGCAGTCGAACGTCCGTTTGAGTGTGACTTGTGCAATAAGACATACAAATCTCGCTATTATTTACATGGGCATATGAAAACACATTCTAATAAGCGTCCATACAAATGTGAAGTTTGTGGCAAAGGTTTTCTAAGTAGATCTCAACTAGATAATCATAATCGTACGCACACAGGAGAAAGGCCGTTTGTTTGTAGTTTTTGTGGTAAATGTTTTGCCGTAGGCAATGCATTAATTGTTCATAATCGAATTCATACTGGAGAAACGTCATATAAATGTGATTTATGTGATAAACAGTTTAATCTGTTGGGTACTTTGAAAATGCATAAACGACGGCTTCACACAGGAGAGAAACCATATAAATGCAATTTCTGTGAAAAAGCTTTTTGTGATAGCACTACACGTCGAGATCATGAGCGGATACATACCGGAGATTATCCATATAAATGTGTGTTATGCGGTAAAGGACATAACCATCCcaatggtggtcatggtggtaattgtggtcatggtggtaatagtggtcatggtggtaatagtggttATGGTGATCATAGTagtaatggtggtcatggtgttcattgtggtcatggtggtcatagtggtcatggtgttcacggtggttatgatggtcatggtggtcataaTGGTTATGGTGGcaatggtgttcacggtggtcatgatggtcatggtggtgtcacgGACACAGTCAACAATATTAAATGCGAAGATATCCAGGAAAAAGAAGAATGTCAAATATTAAGAGAGAAGGATTGTATCGAAATCAAAACCGAACCGCAAACATTATTTCAAACAGATGTAAAGGATTCATTGTTCCTTAGCGACACAGAAAATCGTATAGCTACTAATGAAAACTCATTAAGTAATGATCATTTTGCACCAAATAATGTTAGTAGTGATACTGATGATGACGATCTAAAACCGTTAATTAACATTCGTTCGCAACGTAAGTTGAACGAATCTGTAACAGACGCAGAGCCTCTGAAATTAACAGATCTcaatgataaaaattataagcCTAATGAATTAGGCTCAGCTATAAATCACATTACTTTAACCGATGGGGGGAATTCGGAtgatattaaatataattcGGCCCAAAAAACGAAGCTAAAATCTAAAACAAGAGTTCGAAAACCATACCGTCTTaagagtaaaaaaattttcaaatgtgaAGAATGTAATAAAGAATTCAAGGGTAAACGGGATTATACGATTCATATAAAACATCATAAGGCACCGTGTGAAATCTGTGGTAAGACATATGCTTATTTAAAACAACACATGAAGAGACACGCCTTAGAAAAACCATTCAAATGTAATGAATGCGGTACAGGTTTTATTAACATGGGAGCATTAGAAACCCATTTGACAACACATACCAACGAACGTCCATTTGAATGCGAAGTGTGCaagaaaacatttaaacatATTTATTCTTTACGAATGCATATAAAAATACATTCACAGGACCGCTCTTTCAAATGTGAAATTTGTGGTAAAGGTTTTCAGAATAATATCAATCTTAAACTTCATGTTCGTAGGCATACGGGGGAAAAACCGTATGTTTGTAGTTTTTGTGGTAAATCTTTTGTAGCACAAACCGATTTAACTAGTCATGTTCGGATTCATACGGGAGAAAAGCCATTTAAATGTAATATTTGTGATAGACAATTTAATGCGCTTAGTACTCTAGTGGTCCATAAACGGCTGCATACAGGGGAGACACCATACAAATGtagtttttgtgaaaaaagttttactTCTAATTCTACACAAAAAATGCACGAGCGGACACATACTGGAGATTATCGATTTAAATGTGCGTTATGCGGTAAAGCACACCTTCATCAACTTAATTTAAAGTCTCACATGAGACATGCACATCGTGAAAACCAATCATAG
- Protein Sequence
- MEVYSLKQKIFIVKTFYQNGNSFQKVKNDFACEFEKTELPTDNVIVELLQSLDKFGNTTEKDVENKINSLSLQSLENLDIFKEIKCEEIHEDEKWDLFTGKGLLKVKTEPELLLSTDSVDASIFHNNTENTFQRLATNEHKLGDQDFTPHSCNKDPDEGRIDLNPLNETFEFKDIKEEFNDSEIDFDSDKIGDTQVKCNEITNEVQVKQKSKSASKTKGKRKSARPKKTYKCEKCNKDFKHRFSFIRHLKNHEKSCEICHKYYRDYKTHMSTHTGEKSFPCEECGVQFKTKTHVKMHMVVHAVERPFECDLCNKTYKSRYYLHGHMKTHSNKRPYKCEVCGKGFLSRSQLDNHNRTHTGERPFVCSFCGKCFAVGNALIVHNRIHTGETSYKCDLCDKQFNLLGTLKMHKRRLHTGEKPYKCNFCEKAFCDSTTRRDHERIHTGDYPYKCVLCGKGHNHPNGGHGGNCGHGGNSGHGGNSGYGDHSSNGGHGVHCGHGGHSGHGVHGGYDGHGGHNGYGGNGVHGGHDGHGGVTDTVNNIKCEDIQEKEECQILREKDCIEIKTEPQTLFQTDVKDSLFLSDTENRIATNENSLSNDHFAPNNVSSDTDDDDLKPLINIRSQRKLNESVTDAEPLKLTDLNDKNYKPNELGSAINHITLTDGGNSDDIKYNSAQKTKLKSKTRVRKPYRLKSKKIFKCEECNKEFKGKRDYTIHIKHHKAPCEICGKTYAYLKQHMKRHALEKPFKCNECGTGFINMGALETHLTTHTNERPFECEVCKKTFKHIYSLRMHIKIHSQDRSFKCEICGKGFQNNINLKLHVRRHTGEKPYVCSFCGKSFVAQTDLTSHVRIHTGEKPFKCNICDRQFNALSTLVVHKRLHTGETPYKCSFCEKSFTSNSTQKMHERTHTGDYRFKCALCGKAHLHQLNLKSHMRHAHRENQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -