Basic Information

Insect: Diogma glabrata
Gene Symbol: -
Assembly: GCA_963693315.1
Location: OY856186.1:87482074-87507452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00013 0.027 17.3 1.7 1 23 296 318 296 318 0.97

2 18 2.6e-05 0.0053 19.5 0.2 1 23 324 346 324 346 0.93

3 18 0.00013 0.026 17.4 0.5 1 23 352 374 352 374 0.98

4 18 6.5e-06 0.0013 21.4 2.3 1 23 380 402 380 402 0.97

5 18 3.1e-05 0.0064 19.3 3.9 1 23 408 430 408 430 0.99

6 18 0.00017 0.036 16.9 2.6 1 23 436 458 436 458 0.97

7 18 6.3e-07 0.00013 24.6 5.2 1 23 464 486 464 486 0.98

8 18 2.4e-07 4.9e-05 25.9 2.5 1 23 492 514 492 514 0.97

9 18 0.00012 0.026 17.4 6.7 1 23 520 542 520 542 0.97

10 18 4.8e-06 0.00098 21.9 5.9 1 23 548 570 548 570 0.98

11 18 1.8e-07 3.6e-05 26.4 3.1 1 23 576 598 576 598 0.98

12 18 1.1e-05 0.0023 20.7 7.9 1 23 604 626 604 626 0.98

13 18 1.8e-06 0.00036 23.2 6.7 1 23 632 654 632 654 0.98

14 18 2.3e-05 0.0046 19.7 7.9 1 23 660 682 660 682 0.98

15 18 0.00015 0.03 17.2 6.8 1 23 688 711 688 711 0.95

16 18 1.3e-05 0.0027 20.5 0.9 1 23 717 739 717 739 0.98

17 18 0.014 2.8 11.0 3.9 1 23 749 771 749 771 0.98

18 18 1.7e-06 0.00034 23.3 1.1 1 23 777 799 777 799 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00013	0.027	17.3	1.7	1	23	296	318	296	318	0.97
2	18	2.6e-05	0.0053	19.5	0.2	1	23	324	346	324	346	0.93
3	18	0.00013	0.026	17.4	0.5	1	23	352	374	352	374	0.98
4	18	6.5e-06	0.0013	21.4	2.3	1	23	380	402	380	402	0.97
5	18	3.1e-05	0.0064	19.3	3.9	1	23	408	430	408	430	0.99
6	18	0.00017	0.036	16.9	2.6	1	23	436	458	436	458	0.97
7	18	6.3e-07	0.00013	24.6	5.2	1	23	464	486	464	486	0.98
8	18	2.4e-07	4.9e-05	25.9	2.5	1	23	492	514	492	514	0.97
9	18	0.00012	0.026	17.4	6.7	1	23	520	542	520	542	0.97
10	18	4.8e-06	0.00098	21.9	5.9	1	23	548	570	548	570	0.98
11	18	1.8e-07	3.6e-05	26.4	3.1	1	23	576	598	576	598	0.98
12	18	1.1e-05	0.0023	20.7	7.9	1	23	604	626	604	626	0.98
13	18	1.8e-06	0.00036	23.2	6.7	1	23	632	654	632	654	0.98
14	18	2.3e-05	0.0046	19.7	7.9	1	23	660	682	660	682	0.98
15	18	0.00015	0.03	17.2	6.8	1	23	688	711	688	711	0.95
16	18	1.3e-05	0.0027	20.5	0.9	1	23	717	739	717	739	0.98
17	18	0.014	2.8	11.0	3.9	1	23	749	771	749	771	0.98
18	18	1.7e-06	0.00034	23.3	1.1	1	23	777	799	777	799	0.96

Sequence Information

Coding Sequence: ATGGTGCTAGGTAATACATTACCAGTATCATTAGCATCACCATCTTCGCAAAACATTACATCTTCTAATATTGatacTACCTCTATTCAGCaacataatattaatttatgcTCACTCCATCATTCTTTAATTAATAACAACAATGgatattcaaattcaaatatatttcaacaatCAAATCAACAATTGCAAATTAATCACAATGATCATATTATGGAACCTCTTCAttcaaaacaatcaaaattatACGATTCTGAACAACAATCTAACGTACATCAAAGCAGTTCACAACAAGATTTAAACAATCAATCTTTGCAAAATTGTATAAACAACCATAACAATCATCAGTTACAATTGTCGCAAACAATTAATAATATGGAGAACACTGGCATATTAAgtataaaacaagaaaaaatgCAAAGTTCTAAAATCGAAGTTCCAGAAGCACAGTTTCATCAAGAAACACATGGGAAAACTGTTAAACCACAATTAATGGATGTTCGAACAGCAGACGGATCGGTAGTAAAAATTGGAATGCCAGATCAAGATTTAACAATGTATAAAGTTAACATTGAAGATATCAATCAATTTTTGACATGCCATGAAATTTTTGGAAAGTTACCAGGAGATATATTATCAATTCCACATACTAGTAATATTCTTACAACAGCACAAAATAATATTGTGAATTCAATTATAAGTAATAGTTCTACCAATACAACCTCAACGAGTACAGAAAGTTATAAATTGATAAACGAAGAAACTTTATTGAGGGATAATTCGATACAGAGTATTTCCACTCCAAAAATAGAGAATGACAACAAATATAATACAGTAAACACTGTTGAAGATTCTGCATCAATTTTAGCAGCAAATTCTGCTATACATTCTTGTGATATTTGTGGAAAATTATTTCCGTTTCGTTACCAATTAATCGTACATAGACGATATCATAATGAGCGTAAACCTTTTACATGTCAAGTATGCGGACAAGCTTTTACAACTTCGAATGAATTGACTAAACATGGAATTGCTCATATTGGTGGCCCAATGTTTACATGTAATGTTTGCTTTAATGTTTTTGCAAATGATGCTAGTCTGGAAAGGCATATGAAACGCCATTCTTCAGATAAACCATTTGCATGCACTTTATGCCAAAAAACTTTTGCACGAAAAGAACACTTGGATAATCATATACGAAGCCATACTGGAGAAACTCCATTTCGATGTGAGTATTGTGCAAAAACTTTTACACGAAAAGAGCATATGGTAAACCATGTAAGACGACATACCGGTGATACACCATATAGGTGTGAGGCATGTAAGAAATCGTTTACACGAAAGGAGCATTATGTTAATCATGTTATGTGGCATACAGGTGAAACACCACATCAATGCACTGAATGTGGAAAAAAGTATACTAGAAAAGAACATTTAGCGAATCACATGAGATCACATACAAATGAAACTCCATTCCGATGTGAAATATGTGGGAAATCTTTTACAAGAAAAGAACATTTTACAAATCACATACTATGGCATACCGGGGAAACACCACATCGTTGCGATTTTTGTTCAAAAACTTTCACTAGAAAAGAACATTTGTTAAATCATGTAAGACAACATACTGGTGAATCACCACACCGTTGTGAATACTGTTCAAAATCATTTACCAGAAAAGAACATTTAGTTAATCATATACGACAACATACAGGTGAAACTCCATTCAAATGTACCTACTGTCCAAAAGCTTTTACACGAAAGGATCATTTGGTAAATCATATAAGACAGCATACAGGTGAATCTCCACATAAATGTACATACTGCACAAAAAGTTTCACAAGAAAGGAACATTTAACAAATCATGTTCGACAGCATACCGGAGAATCTCCACATCGGTGTCAATATTGTTCAAAATCATTTACAAGGAAAGAACATTTAACGAATCATATTAGaaTCCATACCGGAGATTCACCTCATAAATGTGAATTCTGTCAAAAGACTTTTACGAGAAAGGAACATCTTACAAATCATTTACGTCAACATAGCAGTGATAATCCACATTGTTGTAATGTTTGCTCAAAACCGTTCACCAGAAAAGAACATTTAATAAATCATATGAGTCGATCACATACAGGCGAACGACCTTTTACATGCGAAGAATGTGGAAAATCATTTTCTCTAAAaggaaatttaatatttcatcaACGAAGTCATAATAAGGGAATTGCTGCGGAACGACCATTTCGTTGTGATTTATGTCCAAAAGATTTTATTTGTAAAGGGCATTTAGTATCTCACCGTCGATCTCATTCAGGTGAAAGACCACATGCCTGTGGTCAATGTGGCAAAACATTTGTAGAAAAAGGGAACCTAGTGCGTCATATGAAGAAGCATGCAATTGAAACAGCATACATACAAATACCAAAATTAGAACCGGCTAGTAGTGGTAGTAGTACATCTCAACCTCAACCATTGGCAACTGGCATCAATTCAATTGCTGCTTCTCGTAATACTGAGTGTAATAATATAACAACGTCAGCACTTCCTTCTatgacaaataattttaaaatacagtCATCATCACAGACCCATGAGAATGCATCACAACCACAACATATTCCACAGCAACAAACATCACATCAACCTACAATTTCTATTATAACAAAACCTGATTCACACAGTGATAATAGTATGGAAAATTCTACTAATACAATACTAATACATCATATTAGAACAAACCAGGAACATGCAGTTGTTTATTAA
Protein Sequence: MVLGNTLPVSLASPSSQNITSSNIDTTSIQQHNINLCSLHHSLINNNNGYSNSNIFQQSNQQLQINHNDHIMEPLHSKQSKLYDSEQQSNVHQSSSQQDLNNQSLQNCINNHNNHQLQLSQTINNMENTGILSIKQEKMQSSKIEVPEAQFHQETHGKTVKPQLMDVRTADGSVVKIGMPDQDLTMYKVNIEDINQFLTCHEIFGKLPGDILSIPHTSNILTTAQNNIVNSIISNSSTNTTSTSTESYKLINEETLLRDNSIQSISTPKIENDNKYNTVNTVEDSASILAANSAIHSCDICGKLFPFRYQLIVHRRYHNERKPFTCQVCGQAFTTSNELTKHGIAHIGGPMFTCNVCFNVFANDASLERHMKRHSSDKPFACTLCQKTFARKEHLDNHIRSHTGETPFRCEYCAKTFTRKEHMVNHVRRHTGDTPYRCEACKKSFTRKEHYVNHVMWHTGETPHQCTECGKKYTRKEHLANHMRSHTNETPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCEYCSKSFTRKEHLVNHIRQHTGETPFKCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCQYCSKSFTRKEHLTNHIRIHTGDSPHKCEFCQKTFTRKEHLTNHLRQHSSDNPHCCNVCSKPFTRKEHLINHMSRSHTGERPFTCEECGKSFSLKGNLIFHQRSHNKGIAAERPFRCDLCPKDFICKGHLVSHRRSHSGERPHACGQCGKTFVEKGNLVRHMKKHAIETAYIQIPKLEPASSGSSTSQPQPLATGINSIAASRNTECNNITTSALPSMTNNFKIQSSSQTHENASQPQHIPQQQTSHQPTISIITKPDSHSDNSMENSTNTILIHHIRTNQEHAVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -