Basic Information

Gene Symbol
Kdm5_1
Assembly
GCA_963693315.1
Location
OY856187.1:275269891-275283045[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.4e-18 2.8e-14 55.7 0.0 26 89 2 62 1 62 0.94
2 3 0.66 7.5e+03 -0.2 0.0 14 49 740 770 705 806 0.73
3 3 4.4e-25 5.1e-21 77.3 0.0 2 89 1589 1672 1588 1672 0.95

Sequence Information

Coding Sequence
ATGGTCGAGCGAAAAGCTCTTGATTTATATTCATTGCATCGCATTGTTCAAGAAGAAGGTGGAATGGATCAAACAATAAACAATCGTAAATGGTCAAAAGTGGCAGCACGACTAGGTTATCCTCAAGGAAAAAGCGTTGGcacaatattaaaaaatcattatgaACGAATATTGTATCCCTATGATGTTTACGCGTCAGGAAAACCATTGGATATGAAATTAGAACTAGAGGAATTTGATGATCATGATTACAAACCACATTGTATTGAATCTAGACAGCAAGTAAGCCCACCACAAGAAACAACTGCACGACGTTCAAAAAGATTTGCTCAAAATATggttaaagataaaaatatgaaattaggCATAAAGAGAGAAAACATTAGTTCTCCAACGAAAACTAATACACTTAAAACTTATGCAAAGGCTGAAATTAAAACACGAATGGGAGGAACAAAACCAAGTGTATTAGTAAGTTCACCAAATTTGATGGATACAAAACGAAGTATTGCTAGTGATCCACTAGCAAAATATATATGTCATACTTGTATTAGAGGTGATATAGAAGAATCGATGCTGCTATGTGACGGATGTGATGATAGTTATCACACGTTTTGTCTTATTCCTCCTCTTGCTGAAATTCCAAAAGGAGATTGGCTGTGTCCCAATTGTGTTGTTCAAGAAGTTAACAAACCCATTGAAGCGTTTGGGTTTGAACAGGCTCAGCGAGAATATACTCTTCAACAATTTGGTGAAATGGCTGATCGATTTAAATCAGATTATTTCAACATGCCTGTACATGTCGTTCCTACGAGTTTGGTGGAACGTGAATTTTGGCGAATTGTATCCTCAATTGATGAAGATGTAACTGTCGAGTATGGAGCAGATTTGCATACAATGGATCATGGTTCTGGTTTCCCAACCCGCAATTCGTTATATTTATTACCCGAAGATCAGGAATATGCAGAATCATGTTGGAATTTGAACAATTTACCGATACTTGAAGAATCAGTTTTAGGACATATAAATGCAGATATTAGTGGAATGAAAATACCATGGATGTATGTTGGAATGTGTTTCGCTACATTCTGTTGGCATAATGAAGATCATTGGAgttattcaattaattatatgCATTGGGGTGAGCCAAAAACATGGTACGGAGTTCCAGGTAACAAAGCAGAGCTTTTTGAAGATACAATGAAAAGTGCTGCTCCAGAGCTATTTCATTCCCAACCTGATTTACTACATCAATTAGTCACAATCATGAacccaaatattttacaaaatgcAGGCGTTCCTGTTTATCGAACTGACCAACATGCTGGTGAGTTTGTAATAACTTTTCCTCGTGCATATCATGCAGGGTTTAATCAAGGATATAACTTTGCTGAAGCTGTAAATTTTGCTCCTGCTGACTGGTTGAAGTCTGGTAGGAAATGTATCAACAATTACTCTCTTTTACGTCGTTATTGTGTCTTTTCACATGATGAACTGGTTTGTAAAATGGCTTTGGAGCCAGAACGTTTGAGCTACAGTATTGCCACAGCCTCCTATTTGGATATGGCTGAAATGGTTGACTCAGAAAAGAAATTAAGGAAATCGTTACTAGAATGGGGTGTAACAAAAGCGGAACGAGAAGCGTTTGAACTGATCGCAGATGATGAACGTCAATGTGAATTTTGTAAGACTACGTGTTTTTTATCAGCTGTTGTATGTATATGCTCCAAAAACTTTGTTTGTTTGAGACATTATACTGAATTATGCAAATGTGCACCAGATAAGCATACACTGAAATATCGTTATACGTTAGATGAATTACCGTTAATGCTTAAAAAGTTGAAAGTGAAAGCAGAAGATTTCgaaaattggctaaaaaaaattCGTGATATAATAAATCCAAAAGAAAAACCAACTATAACTATGGAAGATTTACAAGAGTTAGCAAGTGAAGCAGAGGAAAAAAAATTCCCAAACTCGATTGTTTTGGAACGTTTAAAATCTGCTGTTTTGGAGGCTGACAAATGTATTACCGTCATTTTGCAACTTGATATAAATAAGATGAGAACAAGAACTCGAATATCATGCGACAGTTCAAAATACAAACTAACAATGGATGAGCTAAATATGTTTATACAAGAAATAGATAATCTGTGGTGTGTTATAAAAGAAGGAGAAAGTGTTAGAGAACTACAACAAATGGGTAAGGAGTTTATTGAAAAAGtgagtaaaattaataaaatttcttttaaaagtATTGATACAAAAGAGTTGGAAGATCTAGTTGAAGAAGGTGGTTCTTTGTGCATAGAGCTGCCCCAAGTGGTTCAATTGAAAGATATTTTGACACAAAAGCTGTGGTATGATGAAGCACGACAATATCGTGACTCATCTGATAAAATTCCTATGTCCGTTTTAAAAAGACTTCTCTCTGAAGGATTAAAACTAACACCATCAACAATCTTAGAAACTGAGCTAGCATACATTGATATGATAATTATATCAGTCGAAGAGTGGGAAACACAAGTAAAAATTAGCTTTGAAACATTTACGGAACAAAATGTAGAAGAAATGGAGAAGTTACTTTTTGAAGGTGATTTGATTGAAGGAATTTTGCCTTCTTACAATATGCTGAAAGACACCTGCAAAAAAGTGAAAGAATGGCTAAGAACAGTAGAAATTTTACAGTCAAATGAAAACTACCCTTATTTTCATACCTTAGAAAATGTTGTGAATCGAGGGAAAAATATATTGATTCAATTAGTTGAATTAGACAAAATGGAAACACATTTAGAAGACGCCCGGAACTGGAAAGATCGTGCATCAAAagcatttttgaagaaaaaatcacaattaaCTTTATTAGACGCATTATCACCACGCACTGAGACTTGTACATCTAAGAAAAAGGttgaaaatatatttgtaaaaaaatttacggAAGAAATGACACCAATGCAAATGGTTATTGCATTTAAAGATGCAGAAGAATTAGAATTAAATGCAATTTCCGAATTACGAAAAATAAACAAAGGAAAAAATCCAGAAAATGATACATTTTGTATATGTCATCGTCATTTTTATGGCTTAATGTACAAATGCCAATTGTGCTGCAATTGGTTTCATTCACAGTGTGTTCCGCCGCCTCGTCAATATGTACGGGCGAATCGTGATAGTATAAGCCGTCGTTCGAACAGTACAACAAATCCTATGTTGGGTTTTAATTTTCCTAAACCAACTCGGAATAAAGATAAggaaaagaaatatttatgcCAATTGTGTTTACGTTCCCGTCGTCCTCGTTTAGAAACAATTTTAGCGTTACTCGTTTGCTTACAACGTTTACCGATTCGTATTCCAGAGGGAGAGGCATTGCAATGTTTAACAGAACGAGCAATGAATTGGCAGGATCGTGCAAGGCAGGCGTTAATAGAGAATGATGAGCTAAAAGttgtattttcaaaatttccatcACGTCTAACAGAGGACGAAGATAGTTGCGGGGAAGATTTACAAGAAAGTAAAACATCTTACATGAGCTCTGATGAAGATGTCACAAAGAAATATTTTGCTGAAGCATCTATTGATCCTTCATCGGAAATGCGTACACCACCTACAAATATCGAGCATGCCTATTTTCAACCGAAAACCGAACCCTTAACTCCAACCAAATTGTTAAACTCCCAGCAAATATTGCGTTCAAAACCACCAATCATAATTATAACGCAATCATTAGTCAATTTGTTAGAACAATTAATGATGGAAGGTGATATGTTAGAAGTGTCATTGGATGAAACACatattatttggaaaattttaaatttagcaaAACCGGATTATACAGATCTACAATATATCAATTCTAAATACAAGTTAAAGCCTGTTCCTATCGAAGTATCAATTTTGTCAACATTTCAAAAACGAAAAGTGGAAGATATTTCGAAAAGATCCAATAAATTTCTAAAGTTGGATGAATCGTCGCAATATAGTTTAGATAAAAGTATAGGTAAAgaaattttatcgaaaacaCCGTGTAAAATTAAGCCAACagtaaattcgaataaaaataaaattgtttccAATTCAGCATCAAGTACTAcgtcaaaaaaaacaaacactaaAACTTATCTCAACTTTAGAAAACTTGTGCcaataaaacgaaacaaaaaactaaaattaggAAAACCATTTGCTCAAGCTGCTCGAGAATTAAATGCTaagaaaattttgaagaaaacgACAAAGAACAAACAAACTGAAGATACTGAAGATAAATCGTCATCGTCTGATGATGATTGTAGCGCAAAAAAGTGTGTTCGTCCATCAGGTCGTGAAGTTAATTGGATTCAATGTGATGGTTGTGAAAAATGGTTTCACATGTTATGTATTGGtctgatcttaaataaagtgAAAACAGATGACGACTTTTTCTGTTCAAACTGTGTAGATAAAAAACCACCACAAAAAGTGAAGTATGATGGCATGTCGGAAGAAAAAAGAAGTGTTGATCATAATCACCCTCAGATAATTGAGTCAATGAACGTTGATGAATGTGATgatttaaaagataaaattaatacCAATAATGATTCTAATGTGATTTTATGTAAAAAAGtttatattCGACCGATTGCTGAGAAATATGGTGTTTGCAAGATCAAACCTCCTGTGGCATGGCAGCCTCCATTTACAGTAGATGTGGATAGATTAAAATTTACACCACGTATACAACGTTTGAATGAATTAGAAGCTAAAACACGTATAAAACTGAATTTTCTAGATCAAATTACAAAGTTTTGGGAACTTCAAGGTTCATCATTGAAGATACCTATTGTCGAGCGAAAAGCTCTTGATTTATATTCATTGTATCGCATTGTTCAAGAAGAAGGTGGAATGGATCAAACAATAAACAATCGTAAATGGTCAAAAGTGGCAGCACGACTAGGTTATCCTCAAGGAAAAAGCATTGGCACAATATTAAAAGATCATTATGAACGAATATTGAATCCCTATGATGTTTACGCGTCAGGAAAACCATTGGATATGAAATTAGAAATAGAGGAATTTGATGATCATGATTACAAACCACATTGTATTGAATCTAGACAGCAAGTAAGCCCCCCACAAGAAACAATTGCACGACGTTCAAAAAGATTTGCTCAAAATATggttaaagataaaaatatgaaattaggCATAAAGAGAGAAAACATTAGTTCTCCAACGAAAACTAATGCACTTAAAACTTACGCAAAGGCTGAAATTAAAACACGAATGGGAGGAACAAAACCAAGTGTATTAGTAAGTTCACCAAATTTGATGGATACAAAACGAAGTATTGCTAGTGATCCACTAGCAAAATATATATGTCATACTTGTATTAGGGGTGATATAGAAGAATCGATGCTGCTATGTGACGGATGTGATGATAGTTATCACACGTTTTGTCTTATTCCTCCTCTTGCTGAAATTCCAAAAGGGGATCGGCTGTGTCCCAATTGTGTTGTTCAAGAAGTTAACAAACCCATTGAAGCGTTTGGGTTTGAACAGGCTCAGCGAGAGTATACTCTTCAACAATTTGGTGAAATGGCTGATCGATTTAAATCAGATTATTTCAACATGCCTGTACATGTCGTTCCTACGAATCAGGAATATGCAGAATCATGTTGGAATTTGAACAATTTACCGATACTTGAAGAATCAGTTTTAGGACATATAAATGCAGATATTAGTGGAATGAAAATACCATGGATGTATGTTGGAATGTGTTTCGCTACATTCTGTTGCCATAATGAAGATCATTGGAgttattcaattaattatatgCATTGGGGTGAGCCAAAAACATGGTACGGAGTTCCAGGTAACAAAGCAGAGCTTTTTGAAGATACAATGAAAAGTGCTGCTCCAGAGCTATTTCATTCCCAACCTGATTTACTACATCAATTAGTCACAATCATGAacccaaatattttacaaaatgcAGGCGTTCCTGTTTATCGAACTGACCAACATGCTGGTGAGTTTGTAATAACTTTTCCTCGTGCATATCATGCAGGGTTTAATCAAGGATATAACTTTGCTGAAGCTGTAAATTTTGCTCCTGCTGGCTGGTTGAAGTCTGGTAGGAAATGTATCAACAATTACTCTCGTTTACATCGTTATTGTGTCTTTTCACATGATGAACTGGTTTGTAGAATGGCTTTGGAGCCAGAACGTTTGAGTTACAGTATTGCAACAGCCTCCTATTTGGATATGGCTGAAATGGTTGACTCAGAAAAGAAATTAAGGAAATCGTTACTAGAATGGGGTGTAACAAAAGCGGAACGTGAAGCGTTTGAACTGATCGCAGATGATGAACGTCAATGTGAATTTTGTAAGACTACGTGTTTTATATCAGCTGTTGTATGTATATGCTCCAAAAACTTTGTTTGTTTGAGACATTATACTGAATTATGCAAATGTGCACCAGATAAGCACACACTGAAATATCGTTATACGTTAGATGAATTACCGTTGATGCTTAAAAAGTTGAAAGTTAAGGCAGAAGATTTCgaaaattggctaaaaaaattcGTGATATAA
Protein Sequence
MVERKALDLYSLHRIVQEEGGMDQTINNRKWSKVAARLGYPQGKSVGTILKNHYERILYPYDVYASGKPLDMKLELEEFDDHDYKPHCIESRQQVSPPQETTARRSKRFAQNMVKDKNMKLGIKRENISSPTKTNTLKTYAKAEIKTRMGGTKPSVLVSSPNLMDTKRSIASDPLAKYICHTCIRGDIEESMLLCDGCDDSYHTFCLIPPLAEIPKGDWLCPNCVVQEVNKPIEAFGFEQAQREYTLQQFGEMADRFKSDYFNMPVHVVPTSLVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTRNSLYLLPEDQEYAESCWNLNNLPILEESVLGHINADISGMKIPWMYVGMCFATFCWHNEDHWSYSINYMHWGEPKTWYGVPGNKAELFEDTMKSAAPELFHSQPDLLHQLVTIMNPNILQNAGVPVYRTDQHAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWLKSGRKCINNYSLLRRYCVFSHDELVCKMALEPERLSYSIATASYLDMAEMVDSEKKLRKSLLEWGVTKAEREAFELIADDERQCEFCKTTCFLSAVVCICSKNFVCLRHYTELCKCAPDKHTLKYRYTLDELPLMLKKLKVKAEDFENWLKKIRDIINPKEKPTITMEDLQELASEAEEKKFPNSIVLERLKSAVLEADKCITVILQLDINKMRTRTRISCDSSKYKLTMDELNMFIQEIDNLWCVIKEGESVRELQQMGKEFIEKVSKINKISFKSIDTKELEDLVEEGGSLCIELPQVVQLKDILTQKLWYDEARQYRDSSDKIPMSVLKRLLSEGLKLTPSTILETELAYIDMIIISVEEWETQVKISFETFTEQNVEEMEKLLFEGDLIEGILPSYNMLKDTCKKVKEWLRTVEILQSNENYPYFHTLENVVNRGKNILIQLVELDKMETHLEDARNWKDRASKAFLKKKSQLTLLDALSPRTETCTSKKKVENIFVKKFTEEMTPMQMVIAFKDAEELELNAISELRKINKGKNPENDTFCICHRHFYGLMYKCQLCCNWFHSQCVPPPRQYVRANRDSISRRSNSTTNPMLGFNFPKPTRNKDKEKKYLCQLCLRSRRPRLETILALLVCLQRLPIRIPEGEALQCLTERAMNWQDRARQALIENDELKVVFSKFPSRLTEDEDSCGEDLQESKTSYMSSDEDVTKKYFAEASIDPSSEMRTPPTNIEHAYFQPKTEPLTPTKLLNSQQILRSKPPIIIITQSLVNLLEQLMMEGDMLEVSLDETHIIWKILNLAKPDYTDLQYINSKYKLKPVPIEVSILSTFQKRKVEDISKRSNKFLKLDESSQYSLDKSIGKEILSKTPCKIKPTVNSNKNKIVSNSASSTTSKKTNTKTYLNFRKLVPIKRNKKLKLGKPFAQAARELNAKKILKKTTKNKQTEDTEDKSSSSDDDCSAKKCVRPSGREVNWIQCDGCEKWFHMLCIGLILNKVKTDDDFFCSNCVDKKPPQKVKYDGMSEEKRSVDHNHPQIIESMNVDECDDLKDKINTNNDSNVILCKKVYIRPIAEKYGVCKIKPPVAWQPPFTVDVDRLKFTPRIQRLNELEAKTRIKLNFLDQITKFWELQGSSLKIPIVERKALDLYSLYRIVQEEGGMDQTINNRKWSKVAARLGYPQGKSIGTILKDHYERILNPYDVYASGKPLDMKLEIEEFDDHDYKPHCIESRQQVSPPQETIARRSKRFAQNMVKDKNMKLGIKRENISSPTKTNALKTYAKAEIKTRMGGTKPSVLVSSPNLMDTKRSIASDPLAKYICHTCIRGDIEESMLLCDGCDDSYHTFCLIPPLAEIPKGDRLCPNCVVQEVNKPIEAFGFEQAQREYTLQQFGEMADRFKSDYFNMPVHVVPTNQEYAESCWNLNNLPILEESVLGHINADISGMKIPWMYVGMCFATFCCHNEDHWSYSINYMHWGEPKTWYGVPGNKAELFEDTMKSAAPELFHSQPDLLHQLVTIMNPNILQNAGVPVYRTDQHAGEFVITFPRAYHAGFNQGYNFAEAVNFAPAGWLKSGRKCINNYSRLHRYCVFSHDELVCRMALEPERLSYSIATASYLDMAEMVDSEKKLRKSLLEWGVTKAEREAFELIADDERQCEFCKTTCFISAVVCICSKNFVCLRHYTELCKCAPDKHTLKYRYTLDELPLMLKKLKVKAEDFENWLKKFVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-