Druf083194.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- -
- Assembly
- GCA_963924295.1
- Location
- OZ002743.1:102201408-102204827[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.031 14 8.9 1.1 2 23 159 181 158 181 0.92 2 9 0.011 5 10.3 4.6 2 23 291 313 291 313 0.91 3 9 0.00086 0.4 13.8 2.8 3 23 405 426 403 426 0.96 4 9 0.15 70 6.7 0.1 3 23 659 680 657 680 0.94 5 9 0.00037 0.17 15.0 0.4 3 23 708 729 707 729 0.93 6 9 0.0079 3.7 10.8 3.6 2 23 775 797 774 797 0.96 7 9 0.077 36 7.6 4.2 2 23 811 833 810 833 0.92 8 9 3.7e-05 0.017 18.1 0.2 2 23 880 902 880 902 0.96 9 9 0.061 28 8.0 1.1 1 23 967 989 967 989 0.99
Sequence Information
- Coding Sequence
- ATGGCTGCATCTGTATATGCAACCCCACCACCCGATTTAAGTGGAGAAGACACCGCGTTAAGTGATGTCTCAAATTCTTCTCAAATTAGTAGCTCGAGCTCACAATCAAAAGCAACAAAAAGAAGTATAGCGGCAACATTATTAGGACATCAAAGTAGAATAAATACGTATGATTCCGTTCAGGTAGACCAGGCTAAGAAGAGACGAAAACAGTCTACACCAATTAGATTATCAGCGCTCAATCTTAGTACGGATTTATCAATTCGAACGGATGAATGTGGAAACGAGGAAAAATTACCAAAGCTCTTTGAAACTGGTTTGGAGCAGATTGATAATAATTCTATCTCTGATTTACATACAAACATATCACCAAATTTACAAGAAATTGCTAAAGTTAGTTCCTTTCGCTGTCAGATTGATGGAGAGACTGAAAATAGTAAGAACCGTGACATTACAAGTGAACTGCAAAACAAAGAGTGCGAACAGTGCCACAAAAGATTTGATACGGATATTAATCTAGGTATGCACTTAATACAACAGCATTCAacagcaaaattgttgcatcaaGAAAATGAAGAAGTGAAGGCCGATATAGAAACAataagtgcaaaaattaaaattgaaccgGATGGTATCGAATCAAATACACTTGAAAGCAGATCAAGCCAGCAAATGACGATTCCAAGGCCAGAAGAATGGCTGTCAATGCCTGGATTAGGATTTCCATTCCCACCTGAAGCAGCTGCTGCTGCTCTATCGGCGAGTAGTTATTTATCGCAGCTACCACTTTTAAGTGTTCCACCAGTAGGTGCTTTTCCGTCAGTGGAAGGACTTTCCCGACCGCCTTTACGTATTTTCAATCCTGAGGCTTACTGTGATCTCTGTAATAAAGAATTTTGCAACAAATACTTCCTAAAAACGCACAAAGCTAACAAACATGGAATTTATGACCCAGTGGGATCTTCCAGTGATTCGCAAACAAGTAATCAAGTAAATCCACTTACTCAAGTTCTTCAGATGCAGTttcaacagcagcaacagcaaatggagcaacaacaacaacagcaacatcaacaccaacaacaacaacagcagcaacaacaacagcaacaacttcaacaacaacaacaaatacagCAACAACAAATGCAACAGCAACAAAATCAACAGCAGGTGCCACAAAATTTGATGCTCCCAGAACCTGCAATTTTCTGCGATATTTGCCACAAACGATTTACAAACATATTTGCCATGAAAAGACATCGGAATAAGGCTCATGAGATTCCTCCACCAAGTAGTCCAATTCAGCTTAAACTCGATGCTGAGAATGGTAGCCCCAGCGACAAGGAAGTATCGACACCGCTTCGCTTACCAGAAGGATTTCGAGAGGATTTTACCCTAGAACAAGAGGATGTATCATTCACGCCTCAGCCCAGGAAGCTATCGCCATCTTCGAGTCAACAGGCACGAGAAGCAAATTTTTCTGTGGAGAAACTAAAGCGGTTGGGCGTTATTAATCCTGAGGCATTCTGTGATTTGTGTTGCAAAGAGTATTGCAATAAATATTTCCTTAGGACGCACAAGCTTAAACGCCATGGGATTTTGATTCCTGCTGATGATGTAAAGGACGATAAAGTTCAGTGGCCATTTGTTCAAACTACTCCATTAAACTTAATGATTGCATCGGAGAAACTTCAACAGCACAAATTACAGGAACAAACTGGTGACAAAAATCTGAAATTCAAACAGGAATCTGATGAGCATATCATATCTGCGAAAATTAATGGAACAGGACAAGATGAGTCTTCCAAAAATGAAAACGGTAAGAATTTTGAACTTCCAGATAATTCCTCGCACAGCATCTTTGACGGCAGCAATTCTGGCCAAGATCCCGAAGCAATTAGTATCgatttacaaaaattacaatcAATGATACTGCAGCTAAATGATTTAAGTGGGCAGCGGCCAGTAAATTGTAATATCTGTGGGAAAGAAATGGATAATCAATATATTCTTCATGCCCATATTGCTACTGAACATTCTGGTGATAATAATAATACCAACCTGAAAACATCACGGTGCTCATCTCCAACAGCAAGTGTTGGTCCGCAAAACGAAATCTGTAAACAATGTGacaaagaatttaaaaatctTCTTGAGTTAAAACAACATATAATCGAAACACACAGCTTATCCCTTAACAGTCCCGTCCGAGATGGGTTTGTTACTCCCGAGAGACCCATTAATTCCACTTCGAATCCACCCATAACACCGAATCAGAACGAAAGGAGGCCACCATATACAATAACACCCACAAGCAGCTATTGTGAGATATGCAATAAGGAGCTGTGTAacaaatatttcatgaaaacacATATGCAAAGAATGCAtggtattgaaattgaaaatggtgcTCAGATTGGTGGTGTTGTCTGTAATATTTGTAACAAGGAGCTATGCAGCAAATATTTTCTGCGAGTGCATAAACACAATACGCACGGAATAGTAGACGAAGGATCACCATTGCCTCAAACGCGACAAAACGGGGATCAGCCAGAAAACGAGAATATTTTTGCATTAGATAATAAACCTGACTTATCAGACATAAGTAGCAGATATTTTACGCATTATACAGAAGTATGTCCTCTTTGCAGTCGACGATTTAGAAGTCCTAAATGGTTGCGAGCACACTTAATGAGTGATCATGGAAAAGCCGGAACAGATAAACTCCGGGAAATCGAACAACAAATGAATTTCAATAAACCTGCCAGTCCGACGCTCAAGATACCGAATGGAGGCTTAAGTTTGAACAATATTGACCCTTCGCTTCTTACAAAAGGCACATTTTCGAGTTTATTCATGAATGAAGACGGTATTAATTCTCCGCGCTTTAAGGAATATCAGTGTTCAATGTGTTCCTTTTCGACACCGTATTACGCATTTCTTTTCATACACGAAAGATCTCATACGTTTCTAAGTAATCCACCTCCACCTCCGATAAAATCTGAAACAGCTGTATCCATAGCGAAAGATCAACAACGTGTTGCTCAGCCAGCAGCTGCATCATCTTCGGGAACTCCAACAACAACTCCAGCATCAACTCCTGTACCACAAACTCCACAAGAAAATGCTAATAGCAGTAAACGTgagccaccatataattcactgTGTGATCTGGCGAATATAACAAATCGGCCAGCTACTTACGCTTTACCTCAACAAAATTTCGACGGTGAGCTAATGCAATCGTTTCTGATTGAAGAATCCAGTTTTACTACCAATAATAATGGCGGCGGCGGTGGCGATAACGAGATAAGCAACTCTAAGGTAAACAAATTTGTTCCAGCTGTGGTATTTTTACCGGTTAAAGAACGTATCTCAGGTCCAATAACAGTATCCTTTACATTAACACCAGCTTAA
- Protein Sequence
- MAASVYATPPPDLSGEDTALSDVSNSSQISSSSSQSKATKRSIAATLLGHQSRINTYDSVQVDQAKKRRKQSTPIRLSALNLSTDLSIRTDECGNEEKLPKLFETGLEQIDNNSISDLHTNISPNLQEIAKVSSFRCQIDGETENSKNRDITSELQNKECEQCHKRFDTDINLGMHLIQQHSTAKLLHQENEEVKADIETISAKIKIEPDGIESNTLESRSSQQMTIPRPEEWLSMPGLGFPFPPEAAAAALSASSYLSQLPLLSVPPVGAFPSVEGLSRPPLRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYDPVGSSSDSQTSNQVNPLTQVLQMQFQQQQQQMEQQQQQQHQHQQQQQQQQQQQQLQQQQQIQQQQMQQQQNQQQVPQNLMLPEPAIFCDICHKRFTNIFAMKRHRNKAHEIPPPSSPIQLKLDAENGSPSDKEVSTPLRLPEGFREDFTLEQEDVSFTPQPRKLSPSSSQQAREANFSVEKLKRLGVINPEAFCDLCCKEYCNKYFLRTHKLKRHGILIPADDVKDDKVQWPFVQTTPLNLMIASEKLQQHKLQEQTGDKNLKFKQESDEHIISAKINGTGQDESSKNENGKNFELPDNSSHSIFDGSNSGQDPEAISIDLQKLQSMILQLNDLSGQRPVNCNICGKEMDNQYILHAHIATEHSGDNNNTNLKTSRCSSPTASVGPQNEICKQCDKEFKNLLELKQHIIETHSLSLNSPVRDGFVTPERPINSTSNPPITPNQNERRPPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVDEGSPLPQTRQNGDQPENENIFALDNKPDLSDISSRYFTHYTEVCPLCSRRFRSPKWLRAHLMSDHGKAGTDKLREIEQQMNFNKPASPTLKIPNGGLSLNNIDPSLLTKGTFSSLFMNEDGINSPRFKEYQCSMCSFSTPYYAFLFIHERSHTFLSNPPPPPIKSETAVSIAKDQQRVAQPAAASSSGTPTTTPASTPVPQTPQENANSSKREPPYNSLCDLANITNRPATYALPQQNFDGELMQSFLIEESSFTTNNNGGGGGDNEISNSKVNKFVPAVVFLPVKERISGPITVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00454118;
- 90% Identity
- iTF_00454118;
- 80% Identity
- -