Druf022707.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- RTase
- Assembly
- GCA_963924295.1
- Location
- OZ002740.1:161671013-161683573[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7 8.1e+02 3.4 2.6 1 23 1049 1072 1049 1072 0.93 2 13 1.4 6.4e+02 3.7 3.0 1 23 1167 1189 1167 1189 0.95 3 13 8.1e-05 0.038 17.0 2.1 2 23 1192 1213 1192 1213 0.97 4 13 6.3e-05 0.029 17.4 0.3 1 23 1219 1241 1219 1241 0.97 5 13 1.8e-05 0.0085 19.0 5.8 2 23 1248 1270 1247 1270 0.96 6 13 3.8 1.8e+03 2.3 0.4 5 23 1283 1301 1280 1301 0.95 7 13 0.0075 3.5 10.8 4.2 3 23 1308 1329 1306 1329 0.95 8 13 0.0075 3.5 10.8 0.1 2 23 1340 1360 1340 1360 0.97 9 13 5.6e-05 0.026 17.5 0.6 1 19 1366 1384 1366 1385 0.96 10 13 0.00013 0.06 16.4 0.3 1 23 1396 1418 1396 1418 0.98 11 13 7.7e-05 0.036 17.1 7.6 1 23 1424 1446 1424 1447 0.96 12 13 0.0033 1.5 12.0 4.0 3 23 1454 1474 1452 1474 0.98 13 13 0.0098 4.5 10.5 5.6 1 23 1480 1502 1480 1503 0.93
Sequence Information
- Coding Sequence
- ATGACAAGCCCAACCCAAGGAAATCGCTTCGCTGGATTATCGGAGGTGAACCTATCTCATGGCAATTATCCAACACACACCCACGAACAAAAAATACGTCTATCAGAGCTGGTGGAAGATCTGGCCACGGCATGCAGCGGACTACAGACAAAGCCGAGATATACGGTTGTAAACGTAAACAGTACTAAAACACTATTGAAACCCGAGACAACACAGGATCAAAAGCTACTATTTAATATAAACAAATCTAGCAAAACGAACGCTTTCTCCTTCATACCCCCGGAGGAGAAACATGTCAACTTGGTCTTAAAAAATGTTCATCACAGCTACGATGTAGACGATGTTAAGCAGGACTTAGTGAAACTAGTTCCGGAAGCTAGAGTGATAAAAGTCTCCAGATTATCTTCACCACATGCAAGGAGAAAGGGCATAAGTTACAACGCCTTCATCATAGAGTTGGAACCTGGTTCGGACCCAGTAGGCATTATTTCAGTGCGGTACTTAATGGGACAAAGAGTGACCTGGGAGAAGCTAAGAAACACAGGCATCATCCAATGTAAGAACTGTCAGAACTTCTGCCACATCGCCATGAACTGCACTGCACAATACAGATGTGTAAAGTGCAAAGGAGGACATCTTCCTGCAGAATGCAGTAGGAAAGCTGCAGCAGATGTGAAAGACAGTGTTATAGCTCAACCTCCACCTTTTTGTGTCAACTGTCAGAAGGATGGGCACACCGCCAACTACAGGGGCTGCACAGCCTACAAAAGAAGCACCACCGCTCGGCAGAATAAAAAAGCAGATACGGAGAAGGTGCATCAGCAATCCCATAAAGCAGTCGCCAATTATGTACAGGAGGGTGCACCCCAAGGCTCCGTTCTCGGCCCGATCCTCTTCAACATCTTCACATCGGATCAGCCAGCTAACGACTCAACTACAACCACTCTACTTTACGCGGATGATTCTATCACATACTTATTCGCCTCTAGTCCAAATTATGCAATTCTTAGCATCAAAAGAAAACTAATGGACCTGGTGAACTACTATACTAGGTGGGGATTCAAGTTAAACCTTGATAAAACCGACTTTATTCTCTTTCGTAAGCCCGCATCCAATTCAAGGAATCTCAGAATCGCAAGCACTTGCAAAAAAGATTCCTTAACCCTCAGTAGCTACGAGATCAAACCGAAAGACTCGATTAAGTATCTTGGAGTTAGATTCAGCAAACTCTTCAAATTCAGGGAACAAGCAGAAGCCGTAATTAAGAAAGCCAACATAGCCTATGGTCTCATTAGTCCGATTATGCGAAAAAGATCCGGCCTGTCCAGTAAAGTTAAATTCCTATTATACAAGCAATTTATCAGACCAGTATTATCCTATGCATTCCCCATTTGGTTCACTATGAACAAGACAACATTAGGTAGAATACTAACCCTTGAGAGAAAAATTATAAGAGCATGTACtgaaatacACCTACCTTTACAAATTGGTGTGGAACTTCTATGGAGCCATTTTGTAGAGCCAGATTCTGAAGATATCAAAACAGAAATATCAGAAAGTTTTGAAGCAGATGAATCCCATGAAGATGCAGAACAAAAATCTGATTCCGAAACcgtaattaaaaatgaatttgaaaataatatattGCCCCCACCATCGGCAGCCACCAGCGTTATTCGTTTAGCTACAAATAATCAGAAAAACACTAGTCCTGAAAGTGTGCAACAATTAGATAAACCTGAATGTATTGGAAAAACTCGAAAACCAAGCTATACTCTAGACACTGTAAAACGTCCTTACAAACGGGCTCCTAAAAAGATtgtagttaaatttaaaaatccaCCGGTAACTCCAAACTCGAAGGATAATGATGAAAATCCAGAACCAGGTCCTTCGGATCCCACCTTTAAATGTCCTGCAGTTATGGAGGAggttattgaagaaaaaaaggaagaaatatcaTTTAAGAAAATGGAAACATCTGAGGATAGAAATGAAATCTCTTCAGAAATTCAATTAGGAGCAgatgaagaagaaaaagcaaaacaaaacgtAACTGAAAATGAGCAGACAACTCAAGTCACCGAAGTCAAAGGCGACACAATTATTGAATGTGATTATCATGACGAGGTTTCATTGGAACACAAAGAATCTGAAACTATTACTGTAACTCATTTGAAGTCGGAATGTAAAGACAcagaattcaataaaaacttttccGATATGGAATTAGGAGAAGCAGGCATGCCTCTAGTAATAGTACATGAACCCTCATTAATGGAGGATCCAACAACTGAAATAGAAGAAAAGAAGACCGAAGAGAAACCAGAGACTGACAAGAAAAATGTAGAATTTTCGAGATTACttgttgaatgtatgaaaaataatccGCCAGAATCATATTCAATTCATTTGTCTACCATAGAATCAATTCCTGAAACCGTAACAGAATCTCTGTGCGTAAACACAAGTTCTGCTGATGAAAATACTGATTCGGTATCACAGAAAAATGATTCAATGACTCCTCACTCTTTTCCATCAACTTCCTTTTCAAAACCTTGCTTTACTTTACGTGAACAGACTGATTTCCCGAGTTCTCATAGTTATAACGATTATCCGTTTAGTTTTTTGTACGCAAATAACCTTGATAAAAACTGCTTATCGCCAATTTATCCATCGGATGACCAATCATGGCACAAATGTACTGGGCCAACTTTTCAGCAGCATGCACAAATGCAAATCTCAGATTTGGAAGGCGAGCGAAGCAGCTACATTGATTTAGATGCATGTAAGAAAAACGGTACTGATATTTTTCCTTCTGTGGATACTCTAAACATACGCACTGATGAAAAGATGCCAGCTAAAGGTGAAATTTCCGAGCAAGAAAGTAATGGTGAAGTAGACCTCTCCTGGGGCCAAACGTTGTACAATGAGTCGCAGCGCTTTCATAGTCAACTCGAAAATTATGGAACCAGGGAAAGCGGAGGATATAGTAATGACGGTTTCTTTTTCCATCCACAAACTACAAATGGCgatggaaaattaataaaatctccATCACACCTCGAGTCCGAAGAAAAGCACAATCCTGCAGAACCTAAACGAAAGGAACGGAAAATTTCAACGTTGAAGAAGAGAAAATCATTTCAATGTGATCATTGCTTCTCGATATTTGTTAAATTAAAAGATCGCAACACTCATTTACTTGAGCGCCACAATTACAAAAGAGTTAATCGACGTTTAGTTCGTGAGCTGCCTCCGGCAACAGTAACAACTGGCCAAGTTGAAGAGCTCCAACAAGTGGAGGATATTGAAAGTGTCGATGTGAAAAAACCAGAAGTAACTGCTATCACAACTGTAGAATCTTCGCATCTGCCTCGAACAAAGTACGATTCTATTCGAGCAGGTATATATCgtatgttaatgaattttaactTGAGTATTCtccaacaaaataaaaatattgaggtAGACAAATCTCTATTCGACTCAAAATCGTTTTGTTGTTACACCTGTAAGAGAGATTTCATAAGTGTAAAATCTTTTGATGAACATTTAATGGAACATCCTGCAGAATGCTTCACATGCGGAAAGAAATTCACACGTTGGACATATTTTTCGATTCATCTAAAACGTCATCTGGGATGGAAAGATTTTGCTTGTACAGTTTGTAGCAAAAAATTTGTTGTACGTAGTGCTCTAATTGAACACACGAGAATGCACACTGGAGTCACACCATTGAAATGCAAATTTTGTGATAAACACTTTAAACGATATTCAAATTTAACACAGCATACCAGAGTATTCcatcaaacaaaaaattctaaaaagaaagaTTATGTGTGCCATTGCGGAGAAGTTTTACCATCTAAAGCTCGTTTTCTGTGGCATAAGGAAACTCATGATACAAAGCCAAAATGTTGCCCGTATTGTCGAGATAGATTTGTGCATTCAAATAGTCTTAGACGTCATATACGATTAGCCCATTCGGATAAATTTTCCTATACAGAGCCAGCTGAGTGTCCTATATGCAATCAAGTGTATGCAAAAACTAGTCTTAAGGCACATATGGGTACACATTCAATGGATACCCAGCATGAATGCGTAATATGCAATAAGTCATTTAGTACCAAATGGAATTTGAAAATCCACAGTTGGCTTCATACCAATAGAACTGCTAAGCCGTTCAAATGTGATCTTTGCGTCAAGGCTTTTGTACGTGAGGTCGATTACAAGAATCACATGAATGCTCACAAGCAAATTAAGCCATATACATGCGAGTATTGTGGCTGCAAGTTTATAAGGAAGTATAACTATATGCGTCATCGTCGTGAGCATCATGGTCAGAAAAAATTTGGGTGTGATTTATGCGGCAAACTATTCCACAGACATTATTATTTGATAGAGCACAGGCGAACGCACACCGGAGAACGGCCATTCTTATGTACAATTTGTGGTAAAAGTTCAACAACAAAAACTAAtcataataaacatttaaaaattcatcATTCGCGCGATCCCTTCACAACGGAAACATAA
- Protein Sequence
- MTSPTQGNRFAGLSEVNLSHGNYPTHTHEQKIRLSELVEDLATACSGLQTKPRYTVVNVNSTKTLLKPETTQDQKLLFNINKSSKTNAFSFIPPEEKHVNLVLKNVHHSYDVDDVKQDLVKLVPEARVIKVSRLSSPHARRKGISYNAFIIELEPGSDPVGIISVRYLMGQRVTWEKLRNTGIIQCKNCQNFCHIAMNCTAQYRCVKCKGGHLPAECSRKAAADVKDSVIAQPPPFCVNCQKDGHTANYRGCTAYKRSTTARQNKKADTEKVHQQSHKAVANYVQEGAPQGSVLGPILFNIFTSDQPANDSTTTTLLYADDSITYLFASSPNYAILSIKRKLMDLVNYYTRWGFKLNLDKTDFILFRKPASNSRNLRIASTCKKDSLTLSSYEIKPKDSIKYLGVRFSKLFKFREQAEAVIKKANIAYGLISPIMRKRSGLSSKVKFLLYKQFIRPVLSYAFPIWFTMNKTTLGRILTLERKIIRACTEIHLPLQIGVELLWSHFVEPDSEDIKTEISESFEADESHEDAEQKSDSETVIKNEFENNILPPPSAATSVIRLATNNQKNTSPESVQQLDKPECIGKTRKPSYTLDTVKRPYKRAPKKIVVKFKNPPVTPNSKDNDENPEPGPSDPTFKCPAVMEEVIEEKKEEISFKKMETSEDRNEISSEIQLGADEEEKAKQNVTENEQTTQVTEVKGDTIIECDYHDEVSLEHKESETITVTHLKSECKDTEFNKNFSDMELGEAGMPLVIVHEPSLMEDPTTEIEEKKTEEKPETDKKNVEFSRLLVECMKNNPPESYSIHLSTIESIPETVTESLCVNTSSADENTDSVSQKNDSMTPHSFPSTSFSKPCFTLREQTDFPSSHSYNDYPFSFLYANNLDKNCLSPIYPSDDQSWHKCTGPTFQQHAQMQISDLEGERSSYIDLDACKKNGTDIFPSVDTLNIRTDEKMPAKGEISEQESNGEVDLSWGQTLYNESQRFHSQLENYGTRESGGYSNDGFFFHPQTTNGDGKLIKSPSHLESEEKHNPAEPKRKERKISTLKKRKSFQCDHCFSIFVKLKDRNTHLLERHNYKRVNRRLVRELPPATVTTGQVEELQQVEDIESVDVKKPEVTAITTVESSHLPRTKYDSIRAGIYRMLMNFNLSILQQNKNIEVDKSLFDSKSFCCYTCKRDFISVKSFDEHLMEHPAECFTCGKKFTRWTYFSIHLKRHLGWKDFACTVCSKKFVVRSALIEHTRMHTGVTPLKCKFCDKHFKRYSNLTQHTRVFHQTKNSKKKDYVCHCGEVLPSKARFLWHKETHDTKPKCCPYCRDRFVHSNSLRRHIRLAHSDKFSYTEPAECPICNQVYAKTSLKAHMGTHSMDTQHECVICNKSFSTKWNLKIHSWLHTNRTAKPFKCDLCVKAFVREVDYKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGQKKFGCDLCGKLFHRHYYLIEHRRTHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTTET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00455411;
- 90% Identity
- -
- 80% Identity
- -