Basic Information

Insect: Dioctria rufipes
Gene Symbol: -
Assembly: GCA_963924295.1
Location: OZ002740.1:317516672-317517823[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.022 10 9.3 4.7 1 23 136 158 136 159 0.96

2 8 0.018 8.4 9.6 1.9 1 23 164 185 164 185 0.96

3 8 1.5e-06 0.0007 22.5 0.5 1 23 190 212 190 212 0.97

4 8 0.0076 3.5 10.8 3.2 1 15 218 232 218 241 0.83

5 8 1.6e-05 0.0073 19.2 4.3 1 23 247 269 247 269 0.98

6 8 8.3e-06 0.0039 20.1 2.8 1 23 275 297 275 297 0.97

7 8 1.6e-05 0.0074 19.2 0.3 3 23 305 325 304 325 0.97

8 8 1.2e-06 0.00056 22.8 0.8 1 23 331 353 331 353 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.022	10	9.3	4.7	1	23	136	158	136	159	0.96
2	8	0.018	8.4	9.6	1.9	1	23	164	185	164	185	0.96
3	8	1.5e-06	0.0007	22.5	0.5	1	23	190	212	190	212	0.97
4	8	0.0076	3.5	10.8	3.2	1	15	218	232	218	241	0.83
5	8	1.6e-05	0.0073	19.2	4.3	1	23	247	269	247	269	0.98
6	8	8.3e-06	0.0039	20.1	2.8	1	23	275	297	275	297	0.97
7	8	1.6e-05	0.0074	19.2	0.3	3	23	305	325	304	325	0.97
8	8	1.2e-06	0.00056	22.8	0.8	1	23	331	353	331	353	0.98

Sequence Information

Coding Sequence: atgaaaaatttcgaTGAATTTTGGGGTACTGGACTCACATTTTTAGATCTTTACGAATACCTACTAGGCACTAAAAAAGATCCAGAAGAAAACCCTTCATATTTGTGTAAAATGTGTGAAGAACGTTTGGTCGAGGCGTATTTGTTTAAGGAGCAATGTTTAGAATCGGAAAAGATGTTTtatcaaaaagaaataaataaagaattggtAGAAGAAAAACATTCAACGGAACAAATCGTAACAGAAGATAACGCGCCCAGCGAATATATGGAGAATGTAGCGATTGTTAATGTTATTTGTAATACAAACAGTTCCGTAGATCTAGCAGCAATACTGGAATCAGATGAAAGTCAAAATCCAACATCTATGCATGATGACTCTTCTGGAGAAAAGGTCACACTGAAATATAGTTgcttaaaatgtttaataaagttttcttcgtATCAAGAATATCAAAGTCATTACAGGCAGCATCATAGACAGAAAAAACATGTTTGTTCCGAATGTGGTAAACTGGTAGCTCGACATAATCTTGAAAAGCATCAGCTTAGTCATTCCCGTCCAGAGCATGTTTGTGAAGCGTGTGGCCGAGCCTTTACTCTTCGAGAGAATTTAACCAAACACATCCGAATCCATATGCTCGATCATCGCTACGAATGTGAGTACTGTGGAAAAAAGTTCATCCATTGGAACAGTAAACGTTGCCATGTAGTCTCACAgcatacaaaagaaaagaaatatgaaTGCACGTTttgcagtaaaaaatttgcacatagCAGCAATATGCTACGTCATGTCCGGTATCATACCGGACAAATGTCGCACTCCTGCTCCTACTGTTCAAAGGAATTCAATACAACGTCTGAGCTGAAAAATCACATCGTAACACACACCAAGGAGAAGAATGAAATTTGTGAAGTATGCAATAAAGCCTTTGGAACACGAAAGGGATTGAGGAATCATCTGAAAATTCATACTGGCGAACGTGATTATGTGTGCCCTGTTTGCAGTAAAGCTTTCACACAGCCCCATGTCCTAAGAACACATCTTAAATCCCATCCAGAATATCCAATGCCTCCACCAGGAGCCATCCTATCAAGACGGCGACTAGAACGTGAAATTACAAATGAAACTACaggaaacatgaaataa
Protein Sequence: MKNFDEFWGTGLTFLDLYEYLLGTKKDPEENPSYLCKMCEERLVEAYLFKEQCLESEKMFYQKEINKELVEEKHSTEQIVTEDNAPSEYMENVAIVNVICNTNSSVDLAAILESDESQNPTSMHDDSSGEKVTLKYSCLKCLIKFSSYQEYQSHYRQHHRQKKHVCSECGKLVARHNLEKHQLSHSRPEHVCEACGRAFTLRENLTKHIRIHMLDHRYECEYCGKKFIHWNSKRCHVVSQHTKEKKYECTFCSKKFAHSSNMLRHVRYHTGQMSHSCSYCSKEFNTTSELKNHIVTHTKEKNEICEVCNKAFGTRKGLRNHLKIHTGERDYVCPVCSKAFTQPHVLRTHLKSHPEYPMPPPGAILSRRRLEREITNETTGNMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00454027;
90% Identity: iTF_00454027;
80% Identity: -