Druf090881.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- -
- Assembly
- GCA_963924295.1
- Location
- OZ002744.1:28564567-28571504[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.2 3.8e+03 1.3 0.3 2 19 32 49 32 52 0.83 2 16 0.024 11 9.2 1.8 1 23 73 95 73 95 0.94 3 16 0.0017 0.77 12.9 3.1 1 23 101 124 101 124 0.92 4 16 0.011 4.9 10.4 1.0 3 22 160 179 158 179 0.94 5 16 0.0016 0.73 13.0 1.3 1 23 187 209 187 209 0.98 6 16 0.00034 0.16 15.1 3.5 1 23 215 237 215 237 0.97 7 16 0.00012 0.057 16.4 0.7 1 23 243 265 243 265 0.95 8 16 0.04 19 8.5 0.5 1 22 271 292 271 292 0.97 9 16 0.0085 3.9 10.7 5.8 1 23 597 620 597 620 0.96 10 16 9.3e-05 0.043 16.8 3.2 3 23 644 664 642 664 0.95 11 16 0.00032 0.15 15.1 0.1 2 23 700 722 699 722 0.95 12 16 0.00011 0.051 16.6 0.5 2 21 743 762 742 763 0.93 13 16 0.00015 0.069 16.2 4.2 1 23 771 793 771 793 0.97 14 16 8.6e-05 0.04 16.9 2.9 3 23 801 821 799 821 0.96 15 16 3.1e-06 0.0015 21.5 0.2 1 23 827 849 827 849 0.98 16 16 0.015 7 9.9 1.4 1 21 855 875 855 876 0.93
Sequence Information
- Coding Sequence
- ATGTCGTCAGACAGTGAAAACTACGCTAACTGGTCAGATTCAGAGGAATCTGATGATGATAATCgtacgaaaaatattaaaaactatgAACGTAGCTGTAAATATTGCGTAAAATTAGTTAAAAGCGCAGAACACCTTCCAGAACATGAAAAGAAATGTTCTGCAGCGCTAAGAAACACTGCAGATTTGGTCACATGTAAAGATGGAAGCAAGAGATTTCTCTGCGATATTTGTTTTAGATTCTTCAAGTATTTAACAGGTTTGGATAAGCATAAGAAATGGCATGAGCCTCCAGGAGGATTTGTATGTAGGTACTGTGATACCAGGTACTGTACATCACAAGAGCTCGAAAAACACAAGGAAGAAAGTCACCAGGTCTACAAGTGCCAAATTTGTAAATGCACTCATGAGACTCTGCAAAGGTATCTCGATCACATTAAATTGGAGCACAATGGATTGGATCGAGTTTGGGTGCATTGCGATGATTGCGGTTTCAATTTTAAATCACAGTCTATTTTAAATTATCACAAGAGGACCAAATGTGGAACTATTAAACCCTTCAAATGTGATGAGTGTGGATCACACTATCAAACCCAAGCTACACTAACTATACACAAATTGATTCATACAGGAGAAAAGGCATTCTGTTGCAGCTATTGTGGAAAGAATTTCTTAAGTAAGGGACAACTAACCGTACATGAAAGGAAACATACCGGTGAAAAGCCCTACAAATGTGAGgtCTGTTCCAAGGCATTTTCTTATCGTGAAAGTTTAGTTACTCATTCATCTCTTCACACTGGAATTAAGCCGTATGTTTGTGAAGCGTGTGATGCTAGATTTTCATGTGTTGGGAATCTTCAAAAACATCGCCGTACACGCCCAAATAGTTGTGGACTACCACAATATTGCGTTAATAAAAAAGCAGCCCCAAGACCTAGCAGTAAAAttccaGGAACACTAACCATGTCAAATGTGAAAATTACAAAAGCAAACAAAGTGATAGGTCTAAAGGGCAAGAATAATTCGGTGGATACCATTCAAAATGAAcctaaaaatggaaataaatgtTCAAAAAAAGCTAAGAAAAAAGTTGAGGAAGAGAATGATATTGAAACGattttaaaaagtgaaaatatgAAGCGTGAAGTAGGGAGGAGTGGAGATGAAGAACTGAGAGAAACAGACAACACTATACAAATGCTTGACATCCAAGTTCTTAATGAACCGATAGAAAAAGAAGTCACAAATATAGTGGAGCCTACAGTCATGGATTACGAAGAGGGAGTCAGTTGTTTTGTTGTCACTACTGCAGCTGAATATCATGTAATCCCATTTGATCAGAATAAAAAAAGTAATGCAAACGAAGAAAGCATAGAACATGATGAATATGAAGAGAATGAAGAGATTTTATTCGAGACAAAGACAGTCGGTTACGAGGATATAAAAATAGATTCAAGAAATTACGAGGAAAATGACGTGGACATAGTGCAGCAATACAACGAAGATGAAATGTTGCTTGTTATCATGAAAaacgaagatgatgatgatgaagatgaagaagaaaatACACCTTTATCATTACTAAAGACTTCCACTGAAAAATCTCTAAATGAAGGCACAAAAGATATAGTAGAGACAGTTAATGAAACGGATCCTTTAAATTCATGTTGTGAAAACATTTTCGATGACGAGCGTTGTAATGCAGCTGATAGTGATCCAGTATATTCTGAGGAAGAAAATGATAATCATCAAGATAGTAGTATAACATACGTTTCGAAAAGAGATCTTTATGAGTGTGAGCATTGCCCCAAGATTTATCATCACAGAAGATCTTTTCTTAAACATCTCAAAGCTGATCACAATTTACAACAACCTGAGCTAGATGCGGCACCAAATAGAGCAAGGAGAAAAAAATCAGGTTGCCATCTTTGCCCTCATTGTAAGCGGTCTTACATAAATCCGAAATCTTTAGAAACTCATATCAAGAATCATGGACCAGATGGGAAACTAATATACAAAAGTGCGTGCTGTGGGCAATACTTTGAAAACAAGAAAGAAGCTGATAATCATGATAGATCTGCACATAGTGAAATGATTACATGTCAAAGATGCGGCAAAACTTATGCAGATCCTGATAAGTTAGGTGCTCACAAACGATATGCACACAAACAGAATGTTCAGGTTAAGGCAGAGACGATTGATGACAAAGGGAAGAAAAAGTTCAGTGTTTGtcagaaatgtggaaaaaaatttaccagtaaaaCAGCATTGTCCGATCATGAGAGATCTGACTGTGGTAGATCACCTCTATACAAATGTGATGAATGTGATAAGCACTTCCATAGCGCTGGATCATTGAAAACTCATAAAACTGTACACACTGGAGAATTGCCGCATTTATGTAATTTCTGTGGGAAAGCATTTCGAACATTCGGACAAGTTAAGGTGCATCAAAGGAAACATAATGGAGAAAAACCATTTAAATGCAATatctGTCCAAAAGCATTTGCCTACCGAGAAAGCCTTCTTACTCATATTTCAGTGCATACGGGAGTAAAACGTTTTATGTGCGAAGGTTGTGGACGAAGATTTTCGTGTATTTCAAATCTGTTAATGCATCGAAAATTTAGCAAAGGTATTTGTGGCGCAATACCTAGCAACACAAAACGCATTTCGGAGGCTATTGGAGTTTCTCACGGAGTTTTGTATGTAGGTGAAAGGCCAGAATAG
- Protein Sequence
- MSSDSENYANWSDSEESDDDNRTKNIKNYERSCKYCVKLVKSAEHLPEHEKKCSAALRNTADLVTCKDGSKRFLCDICFRFFKYLTGLDKHKKWHEPPGGFVCRYCDTRYCTSQELEKHKEESHQVYKCQICKCTHETLQRYLDHIKLEHNGLDRVWVHCDDCGFNFKSQSILNYHKRTKCGTIKPFKCDECGSHYQTQATLTIHKLIHTGEKAFCCSYCGKNFLSKGQLTVHERKHTGEKPYKCEVCSKAFSYRESLVTHSSLHTGIKPYVCEACDARFSCVGNLQKHRRTRPNSCGLPQYCVNKKAAPRPSSKIPGTLTMSNVKITKANKVIGLKGKNNSVDTIQNEPKNGNKCSKKAKKKVEEENDIETILKSENMKREVGRSGDEELRETDNTIQMLDIQVLNEPIEKEVTNIVEPTVMDYEEGVSCFVVTTAAEYHVIPFDQNKKSNANEESIEHDEYEENEEILFETKTVGYEDIKIDSRNYEENDVDIVQQYNEDEMLLVIMKNEDDDDEDEEENTPLSLLKTSTEKSLNEGTKDIVETVNETDPLNSCCENIFDDERCNAADSDPVYSEEENDNHQDSSITYVSKRDLYECEHCPKIYHHRRSFLKHLKADHNLQQPELDAAPNRARRKKSGCHLCPHCKRSYINPKSLETHIKNHGPDGKLIYKSACCGQYFENKKEADNHDRSAHSEMITCQRCGKTYADPDKLGAHKRYAHKQNVQVKAETIDDKGKKKFSVCQKCGKKFTSKTALSDHERSDCGRSPLYKCDECDKHFHSAGSLKTHKTVHTGELPHLCNFCGKAFRTFGQVKVHQRKHNGEKPFKCNICPKAFAYRESLLTHISVHTGVKRFMCEGCGRRFSCISNLLMHRKFSKGICGAIPSNTKRISEAIGVSHGVLYVGERPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00453992;
- 90% Identity
- iTF_00453992;
- 80% Identity
- -