Druf079946.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- -
- Assembly
- GCA_963924295.1
- Location
- OZ002743.1:46520004-46521614[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 8.2 9.7 3.1 1 23 64 86 64 86 0.98 2 12 5.8e-06 0.0027 20.6 1.5 2 23 93 115 93 115 0.97 3 12 7.2e-05 0.033 17.2 1.8 1 23 121 144 121 144 0.96 4 12 0.00055 0.25 14.4 2.2 1 23 151 173 151 173 0.98 5 12 2.2e-05 0.01 18.8 0.1 1 23 178 201 178 201 0.91 6 12 0.00062 0.29 14.2 0.5 2 23 280 301 279 301 0.97 7 12 1.8e-05 0.0084 19.1 2.5 2 23 334 355 334 355 0.97 8 12 7.3e-05 0.034 17.2 2.9 1 23 361 384 361 384 0.97 9 12 3.5e-06 0.0016 21.3 4.5 1 23 390 412 390 412 0.97 10 12 0.044 21 8.4 0.1 3 23 420 441 418 441 0.87 11 12 2.1 9.8e+02 3.1 0.2 2 23 465 486 464 486 0.77 12 12 0.002 0.93 12.6 0.1 1 22 492 513 492 513 0.95
Sequence Information
- Coding Sequence
- ATGATGGAAAAATGTGATTTGCGTTCACTTATCGCACGAGATGGAAGTAGTTTAAAGAAAGTTTATACCAAGCCAGATAATTGTCTGCAGGACTCGCAGGATATTAATTGTGAAACTGAAGTCAAAGAATCAAATGTAATATCCTTTCAAATTATGAGTGAATATGAATCTAAAAAGGTTGAAAGACCTTTCAAGTGTCGGACTTGTGAAAGTGCATTTTTTATAAAAGATCATTTAAGAGCACATGAGAAACGACACACTGgagcttttaaaagaaaatgtgaGATATGCTTTAaaacttattcaaatttattcaatcTGAAACAACATATGAGCACAATCCACAATGAAGCAACAAAATACAAATGCGAATTGTGCTTAAGGGAATTCACAAACAAGAGCTCCTTAACTTATCACACAAAGGCCCaacattcaaatgaaaatattatgtatTCTTGTGCTTTGTGCAGTAAAACTTTTTTTAGTCTTTCACAAGTTAGGAAGCATTCAAAGATGCATAACGGGAGAGATTACACTTGTACCATTTGTGGGTTGGCTTTCAGCAAATTAAGTGCCCTGAGAAGCCATAAAGCAGCTATTCACATACCATTTATTGGTCCAAAGCTTTATCATTCTTCGAATGATAATACAAAAGTGGAAATATTTTTGGATAATGGAAGCGAACTGCCCGAATCATTAGGAATCGATAGAGTTATAAAGGAGGAGAAAATTGATTATCATTCAATGTCTTTTGATGAGTATGGCTTACCGAGTACAGAATCTGAAATACACATAGATAAATGTCAGGCAATTGAGACAAATTTCTCAAATAGCATTCGGTGCACTATTTGTGAAAAAATTCTGATATCAGAACACTCCTATATGATACATATGCGTATTCATAACGGTGATATGCCATACAAACGTGAGAAGTgccctaaaaaaaaatttcctttaccTAGAATACGTAAAATACTTAAAAGAACTCATAAGAAAAGAGAATGCCACATATGCGGAAAGAAATTGTCTCACTTATATGCGCTACAGACTCACATCCGTCTGCACACTGGTGAAAGGCCGTTTAAGTGTAATATTTGTACCAGAGCATTTACTACGACAAGCTTCTTAAAGTATCATAAGAACTCAGAACATACTGGCGAAAGGAATTATACTTGCACAATATGTGAGAAGTCATTCTTTTCCAAAAGCCATCTGACACGGCACAGCTTATCGCACAACCAAATTAAGGGAATTATTTGCGAAATTTGTGGTACGGTTTTTCTTAAACGAAGTTATATGGTGAAGCATAAAATTGATGTCCATAATATCAGCAGTGCAGAAACGAATTCAGTGAAACATCAAGCCAGGAAGAAAGCCGATCTAAAGAAAACTACATGCGGTATTTGCGAAAAGACTTTGAGTGTCAACACAATTCGATCACATATTTTGATAAAACATCGAGATCGGATTAAATATGAGTGCAATCATTGTGGAAATTATTTCGATACTATAGATGCACTAGTCGTGCACCAGGAAACGGATTGCCTGAAATGTGTTGGGATTAATCAAGAGAAGCAAGAATTTTGTGCTGGAGAGTCTAGTGTTGCATAA
- Protein Sequence
- MMEKCDLRSLIARDGSSLKKVYTKPDNCLQDSQDINCETEVKESNVISFQIMSEYESKKVERPFKCRTCESAFFIKDHLRAHEKRHTGAFKRKCEICFKTYSNLFNLKQHMSTIHNEATKYKCELCLREFTNKSSLTYHTKAQHSNENIMYSCALCSKTFFSLSQVRKHSKMHNGRDYTCTICGLAFSKLSALRSHKAAIHIPFIGPKLYHSSNDNTKVEIFLDNGSELPESLGIDRVIKEEKIDYHSMSFDEYGLPSTESEIHIDKCQAIETNFSNSIRCTICEKILISEHSYMIHMRIHNGDMPYKREKCPKKKFPLPRIRKILKRTHKKRECHICGKKLSHLYALQTHIRLHTGERPFKCNICTRAFTTTSFLKYHKNSEHTGERNYTCTICEKSFFSKSHLTRHSLSHNQIKGIICEICGTVFLKRSYMVKHKIDVHNISSAETNSVKHQARKKADLKKTTCGICEKTLSVNTIRSHILIKHRDRIKYECNHCGNYFDTIDALVVHQETDCLKCVGINQEKQEFCAGESSVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00453990;
- 90% Identity
- iTF_00453990;
- 80% Identity
- -