Basic Information

Insect: Dioctria rufipes
Gene Symbol: -
Assembly: GCA_963924295.1
Location: OZ002740.1:31493217-31504636[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00028 0.13 15.3 0.3 3 23 252 272 251 272 0.97

2 13 0.39 1.8e+02 5.4 8.8 1 23 278 300 278 300 0.97

3 13 0.00028 0.13 15.3 1.7 1 23 306 328 306 328 0.98

4 13 1.3e-06 0.0006 22.7 1.5 1 23 334 356 334 356 0.99

5 13 5.6 2.6e+03 1.8 0.0 9 23 435 449 435 449 0.94

6 13 0.0021 0.97 12.6 7.3 1 23 455 477 455 477 0.98

7 13 7.2e-05 0.033 17.2 6.3 1 23 483 505 483 505 0.98

8 13 2.6e-06 0.0012 21.7 0.2 1 23 511 533 511 533 0.98

9 13 0.00025 0.12 15.5 2.8 2 23 540 561 539 561 0.96

10 13 3.6e-05 0.017 18.1 1.6 1 23 567 589 567 589 0.96

11 13 1.4e-06 0.00065 22.6 2.4 1 23 596 618 596 618 0.99

12 13 4.3e-07 0.0002 24.2 3.4 1 23 624 646 624 646 0.99

13 13 2.5e-05 0.012 18.6 0.2 1 23 655 677 655 677 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00028	0.13	15.3	0.3	3	23	252	272	251	272	0.97
2	13	0.39	1.8e+02	5.4	8.8	1	23	278	300	278	300	0.97
3	13	0.00028	0.13	15.3	1.7	1	23	306	328	306	328	0.98
4	13	1.3e-06	0.0006	22.7	1.5	1	23	334	356	334	356	0.99
5	13	5.6	2.6e+03	1.8	0.0	9	23	435	449	435	449	0.94
6	13	0.0021	0.97	12.6	7.3	1	23	455	477	455	477	0.98
7	13	7.2e-05	0.033	17.2	6.3	1	23	483	505	483	505	0.98
8	13	2.6e-06	0.0012	21.7	0.2	1	23	511	533	511	533	0.98
9	13	0.00025	0.12	15.5	2.8	2	23	540	561	539	561	0.96
10	13	3.6e-05	0.017	18.1	1.6	1	23	567	589	567	589	0.96
11	13	1.4e-06	0.00065	22.6	2.4	1	23	596	618	596	618	0.99
12	13	4.3e-07	0.0002	24.2	3.4	1	23	624	646	624	646	0.99
13	13	2.5e-05	0.012	18.6	0.2	1	23	655	677	655	677	0.98

Sequence Information

Coding Sequence: ATGGATGCCATGTGTCGCTGTTGCCTAACAGAACACCCAAATATACACAACATTTTCGAAGATGGAATACTGGAAAAACTTCGATTGTGTTCAAATGTTACAATTTCAAAAGGTGATAGTCTACCGAAAATAGTTTGCGAGAATTgcttagaaaaaattgaaaattcttatGAATTTCGTCAAACTTGTGAAAGATCAGATTCCTGTTTACGAGATTGGATAGAAACGTTGGAAACGAATGAATCTGGAAAAGAAGGTGAACCAAAAATTGATAAAACGAATGGTGACGAATGTGAGGGCAGCGaaacaggaatattaaatttaacagttggtttttctataaaaaaagagGAAGATATCATAGATTTATATGAAACCGACTTAATAGAATGCTTAAGTACGGAAAATGATGAGATGATCGATATAAATCATCAGACAACTAGTGGTGAGAATGAAGAAATTTCGACTGTGACCATCATGTATAGTGATGAGTACGAAAATAGTTCAACGATTGATGATGATGCCTTTAAAATCATAAATGATACCGAAGAAGAAGAAACAGAAATAACACACTCCACCACCTTTGAAAATTATACATGTGAAAATAACCGTGCTTTACTTCaggaagaagatgaagaaaacaATTTATGTAAAGAACGTGCTAGCTCtgatcaaattaatttgaaagttaaaaaagattttgaaagaacaataaaaactcaaaaatctAAACGAATAGAAAAATCAGTGGCGTGCAAAATTTGTAGGGAAACATTCTCTTCCGAAGAAGCTCTAAAGCAACACGGAAATTCCCATATAATAAATGGACGATTCTGTTGTGACCATTGTAGTAAAACATTTAAATGCATTCCATACTTACAAAAACATTTACTTCGACATACTGGATTAAAAAAATACGAATGTACTTTTTGTAAATCAAGATTCTATGATTCAACTTCTCTTAAAATTCATGTTCGAATTCACACTGGAGAAAAGCCTTATGAATGTGAAGTATGCAAAAAACGTTTTTCGCAACATGCTTCACTAAAGGTTCATGTAAGAGTGCATAGTGATGAAACAGAAATAAAACACTCCACCAGCCTTGAAAATTATACCTGTGAAAATGACTATGATATACTTCAGGAAGAAGATGAGTATATTGCTAAAGAAGACAATTTATGTAAAGAACATACTAGCTctgataaaattaatttgaaagttaaaaaagactttgaaagaaaaataaaaactcaaaaatctAAACGAATAGACAATTCAGTTGATTGCAGAATTTCTAGTGATACATTCTCTTCCGAAGAAGCACTAAAGGAACACGGAAATTCCCATGCAATAAACGGGCAATTCCGTTGTGAACAttgtaataaaacatttaaatgcAATCCATATTTACAAAAACATTTACTTCGACACAGTGGATTAAAAAAACACAAATGCACTTTTTGTAAATCAAGATTCTATGATTCATCTTCCCTCAAAAAACATATTCGAACTCACACTGGAGAAAAGCCTTATGAATGTGGAGAATGTAAAAAACGTTTTTCGCAACAGGCTGCACTTAAGGTTCATGTAAGTGTGCATAGTGATGAAAAGCCATTGGAATGTGATGtgtgttttaaaagattttcgcaTAATGGTCTTTTGCGTACGCACAAAAAGTTACATTTACCAGTAAGAAAACATATCTGTACCATCTGCCAGAAAGGATTTACATtatcaaatcaattaaaaatccACATGGAACGACATCAGAATCCAGAAATGAAATATCAATGCAATGAGTGCCGAAGGAGATATTCAAATAGTACCGCTTTAACTTATCACATGCGAACACATACTGGTGAGCGTCCATATAAATGTACGACATGTTCAAAGAATTTCATAACGAAATCTAATCTTTCTACTCACTTAAGGACCCATTCTAAAGAGAAACCACCTCCAAAATTTGAATGTTCTTACTGTGGGAAAGGTGTTTACAGTAGAAGTGAATTGGGTGTTCATTTACGATCACATACTGGAGAGCGGCCCTTTgaatATTCTTTCTGCTACACGCTGAAATACCTAAGACATGAACCCGAAAAAGGAAACTGCgctgagaacaaacaaaaacgaaaacagTTTGTTGAATGTCTTTTGGAATTTCAGTCCCAAAATAAACCTATTTTGTTTATGGATGAAACTAATTTAAACATTCATATTTCAAGAACGCAGGGTAGATCATTAAAAGGAACAAGATGCACCACTATAACAGCCGGTTCAAAAGGTGCTAATGTTCATGTACACGCTGAAATACCTAAGACATGA
Protein Sequence: MDAMCRCCLTEHPNIHNIFEDGILEKLRLCSNVTISKGDSLPKIVCENCLEKIENSYEFRQTCERSDSCLRDWIETLETNESGKEGEPKIDKTNGDECEGSETGILNLTVGFSIKKEEDIIDLYETDLIECLSTENDEMIDINHQTTSGENEEISTVTIMYSDEYENSSTIDDDAFKIINDTEEEETEITHSTTFENYTCENNRALLQEEDEENNLCKERASSDQINLKVKKDFERTIKTQKSKRIEKSVACKICRETFSSEEALKQHGNSHIINGRFCCDHCSKTFKCIPYLQKHLLRHTGLKKYECTFCKSRFYDSTSLKIHVRIHTGEKPYECEVCKKRFSQHASLKVHVRVHSDETEIKHSTSLENYTCENDYDILQEEDEYIAKEDNLCKEHTSSDKINLKVKKDFERKIKTQKSKRIDNSVDCRISSDTFSSEEALKEHGNSHAINGQFRCEHCNKTFKCNPYLQKHLLRHSGLKKHKCTFCKSRFYDSSSLKKHIRTHTGEKPYECGECKKRFSQQAALKVHVSVHSDEKPLECDVCFKRFSHNGLLRTHKKLHLPVRKHICTICQKGFTLSNQLKIHMERHQNPEMKYQCNECRRRYSNSTALTYHMRTHTGERPYKCTTCSKNFITKSNLSTHLRTHSKEKPPPKFECSYCGKGVYSRSELGVHLRSHTGERPFEYSFCYTLKYLRHEPEKGNCAENKQKRKQFVECLLEFQSQNKPILFMDETNLNIHISRTQGRSLKGTRCTTITAGSKGANVHVHAEIPKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00453969;
90% Identity: -
80% Identity: -