Druf055377.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- -
- Assembly
- GCA_963924295.1
- Location
- OZ002741.1:167888754-167889323[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-13 3.9e-11 45.1 0.0 2 38 16 52 15 58 0.90
Sequence Information
- Coding Sequence
- ATGCCAAAATTTATGGGAAGAATTAGTAATAGAGGTAAATGGGacgaaaataaaatgaaagaagcaGTTAAATGTGTGATGGATGGCAAGTTATCAGTAAGACAAGCGGCAGACAGGTATGATGTACCAAAAAGCTCACTTCACGATCGTCTGAAAGTTTTGAAAAATGGCAAAGAGATTACTTTTCACCCGAAGTTGGGGCGATTTGAATCCACATTTTCTGAGAACTTTTCTATGCAACTATATGAATACGTTAAAGAACTGGACAATCGTCTAATGCCATTGAGTAGGAAGGAGTTTTTTAAATTAGCATTTGATCTAGCAGAAAGTCTCAAAATCCCtcataaatttaataaagagaaaAGAATGGCAGGAAAAGACttcttttacagttttaccaaaaAATATCCGAATATGGTTTTAAGAACTCCCGAATCGACTAGCATTGCGCGGGCTGTTGGGTTTAATAAACCGCAAGTTAACCGTTTCTTTGATCAGCTTGTTCACCTTCAAGAGAAATACAAATTCTCTCCTTCTCGAATTTACAACGCCGATGAAACAGGCGTATAA
- Protein Sequence
- MPKFMGRISNRGKWDENKMKEAVKCVMDGKLSVRQAADRYDVPKSSLHDRLKVLKNGKEITFHPKLGRFESTFSENFSMQLYEYVKELDNRLMPLSRKEFFKLAFDLAESLKIPHKFNKEKRMAGKDFFYSFTKKYPNMVLRTPESTSIARAVGFNKPQVNRFFDQLVHLQEKYKFSPSRIYNADETGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00833889; iTF_00833891; iTF_00833892; iTF_00833907; iTF_01303230; iTF_00833888; iTF_01515462; iTF_01515466; iTF_01157581; iTF_01154958; iTF_01157582; iTF_01158621; iTF_00454447;
- 90% Identity
- iTF_00454447;
- 80% Identity
- -