Basic Information

Gene Symbol
nfxl1
Assembly
GCA_963930735.1
Location
OZ005743.1:109422965-109438304[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 1.2e+05 -7.7 5.6 15 19 174 178 173 178 0.81
2 16 0.061 3.6e+03 0.7 0.4 4 10 209 215 208 215 0.96
3 16 2.7e-08 0.0016 21.0 17.0 1 19 223 240 223 240 0.99
4 16 0.82 4.8e+04 -2.9 0.5 1 7 282 287 281 289 0.49
5 16 3.6e-08 0.0021 20.6 10.8 1 18 292 309 292 310 0.96
6 16 0.17 1e+04 -0.7 1.1 1 10 319 328 319 328 0.91
7 16 7.4e-07 0.044 16.4 16.9 1 18 344 361 344 362 0.98
8 16 2.3e-08 0.0013 21.3 12.4 3 18 373 388 371 389 0.91
9 16 0.72 4.3e+04 -2.7 1.6 5 10 417 422 417 422 0.94
10 16 0.56 3.3e+04 -2.4 9.0 9 19 435 445 428 445 0.87
11 16 0.21 1.2e+04 -1.0 5.8 3 12 458 467 457 467 0.88
12 16 0.24 1.4e+04 -1.2 1.1 6 10 528 532 527 532 0.90
13 16 0.0014 81 6.0 11.4 1 12 538 549 538 549 0.93
14 16 2 1.2e+05 -4.8 1.6 6 10 565 569 564 569 0.84
15 16 0.021 1.2e+03 2.2 16.0 1 18 577 593 577 594 0.94
16 16 3.6e-06 0.21 14.2 12.6 1 16 645 659 645 665 0.86

Sequence Information

Coding Sequence
ATGTCATCAGGAAATCCGTGGAAAATTCCTCATAAGCCTGAACAAAAAATCCAGCATAAAAAGTCAAAAAATCATAGTTCTATCCAGCAGCGAAATGGCCAAGCACAAAAGAAGTTTGAAGAAGTACAAAACAGTAATATTGAAAAAGCCAAAGCATATACGGGAATGTGTGAATCTAGTtctgaagatgaagaagaattaAACAATAACGATGATATTTTAGAAAAGCTATTAAGTGGGTACTCTGGCGAAAGGAATCAGTTAATAAAAACGCATATATTTCTTGAGGATTTTCTTCAATCTGGTTCCgtaatttgtttaatttgtaTTGGAACAGTTAAAAGAAGCGATCCAATTTGGTCATGCACcaattgtttttgcttttttcatTTGCAATGCATTAGAAGATGGGGGAATGACAGCATCTCACAGCAAAAACTTCATCAAAGTGGCGAACAAGGCTTTTATAATAACCTAGGAGAGTACATTCCGAAAAAGATTAAGCCAATTAGATGGTGTTGTCCAAAGTGTAGAGAAGAATATAATTCCGAAAATATTCCAACATTATACACTTGTTTCTGTGAAAAGGAAATTAATCCTTTGCCACATCCATGGTTTATTCCACATTCTTGTGGAGAAGTTTGCGAGAAATATCTTATTCCAAATTGTGGTCATAAATGCCTTTTGCTTTGCCATCCTGGTCCTTGCCCTCCATGTCCTCAAAGCATTTTTGTTTCCTGTAAATGTAAACTGTCGCAACCGAAATCAATAAGATGTTTTCAGAAATCATGGACATGTCAATCAAAGaaaacgGTTGCTCCATGTAGTGAAGTTATAGATACTTGTGGAGATACTTGCCAGAAACTTTTAACATGCGGGATTCACAACTGCACTCAACGCTGTCACAAAGGCGAATGTAGCCTgtgCTTAACTATAACTGAGAAAAAATGTCGTTGCGGCCTTCATAATAAAGAACAGCCATGTTCCAGAGTTTTTATATGTGAGACCAAATGCAAAAATATGCGGGATTGTGGGAAACATGTTTGTAATAAAAAGTGTTGCGATGGCCAATGCCCACCCTGCGATAAAATATGTGCCAAGACGCTTTCATGCAAAAAGCATAAATGTAAATCTGTTTGTCATGATGGACCATGCTATCCATGTAATTTGAAATCACAAGTAAAATGTCGCTGTGGATACACCGTAGTCACTGTACCCTGTGGCAGGGAGAAGAAAACTCGTTCTCCAAAATGTACTCAGCTTTGCAGaatccCTTCTAAGTGTCACCACCAAAACCCACATATGTGTCACTTATACGAGTGTCCTCCATGTACGCAGAAATGCAACTTAAAAAATGATACAACTAACTGTGAACATCCATGTGGAGCAAAGTGTCACTCTGCTGTTAAGGTTGCTGTAGACAATACAAAGCAACAAAATCCTAGCATATGGGATTGGAATTATGATAAGTACGAAATAAAGAAACTGCCTCATCCTCGTTGTGAAGTTAAATTAATGGTGACGTGTATTGGTGGTCATGAAACAGCTCTATGGCCATGTTGGAACTCTCAACCAACATCATGCCAAAGAGTTTGTGGACGCGTATTGGCATGCTGCAACCACACTTGTCAGCGGATATGCCATACTGTGGTTGATAAAAATGATAACAATGAACAAGAAGGTTGTGCATCATGTGAGGAAGAATGCAAATTTCCGAGACCGAATGGATGTAGTCATCCTTGCCGCAAGCCATGTCATTTACGTCCTTGTAAACCCTGTGGGGTGAATATTAAAACAAATTGTCACTGTGGCCTAACACAAGTTTATTACAACTGTACCGAATATAATAGAATAGATTTGAATGAAGAAGCTCTTAAAGAGGTCAGAGAGAAGTTACAAAGCTGTGGAACCAGATGCATAAGAAACTATCCATGTGGACATCGTTGTATTTCTATTTGCCATGCAGGCAAATGTCCAGGACCAGAAAAGTGtaagaaaaaaatgaagattTATTGTGATTGCAAGAACTTAAAGGCAGAAATCAGCTGTGAAAAATATCAGAGTGGATTCAGAAGCATTCCGTGTGACAATAATTGTACACAAAAAAAGGAAATCGAAACGAAAGCTAAACAGGTTCAAGAAGAGAAACAACGTAAAATTGAGGAGGAAAAAAATCGATTAGAATTGGAGCAATTCGAGAAAAAATTTGGTAAGAAAAAGCATCGAGAAAGAAAAATCTTtgaagaaaaaccaataaatggCACTAATAAAGTGCTGTTGTCAGTTTGTGGTAGCCTGGCAGCTATTTTATCTATAGTTTTAGCACATTACTTTTTTAAATAG
Protein Sequence
MSSGNPWKIPHKPEQKIQHKKSKNHSSIQQRNGQAQKKFEEVQNSNIEKAKAYTGMCESSSEDEEELNNNDDILEKLLSGYSGERNQLIKTHIFLEDFLQSGSVICLICIGTVKRSDPIWSCTNCFCFFHLQCIRRWGNDSISQQKLHQSGEQGFYNNLGEYIPKKIKPIRWCCPKCREEYNSENIPTLYTCFCEKEINPLPHPWFIPHSCGEVCEKYLIPNCGHKCLLLCHPGPCPPCPQSIFVSCKCKLSQPKSIRCFQKSWTCQSKKTVAPCSEVIDTCGDTCQKLLTCGIHNCTQRCHKGECSLCLTITEKKCRCGLHNKEQPCSRVFICETKCKNMRDCGKHVCNKKCCDGQCPPCDKICAKTLSCKKHKCKSVCHDGPCYPCNLKSQVKCRCGYTVVTVPCGREKKTRSPKCTQLCRIPSKCHHQNPHMCHLYECPPCTQKCNLKNDTTNCEHPCGAKCHSAVKVAVDNTKQQNPSIWDWNYDKYEIKKLPHPRCEVKLMVTCIGGHETALWPCWNSQPTSCQRVCGRVLACCNHTCQRICHTVVDKNDNNEQEGCASCEEECKFPRPNGCSHPCRKPCHLRPCKPCGVNIKTNCHCGLTQVYYNCTEYNRIDLNEEALKEVREKLQSCGTRCIRNYPCGHRCISICHAGKCPGPEKCKKKMKIYCDCKNLKAEISCEKYQSGFRSIPCDNNCTQKKEIETKAKQVQEEKQRKIEEEKNRLELEQFEKKFGKKKHRERKIFEEKPINGTNKVLLSVCGSLAAILSIVLAHYFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00455604;
90% Identity
-
80% Identity
-