Basic Information

Insect: Dioctria linearis
Gene Symbol: -
Assembly: GCA_963930735.1
Location: OZ005740.1:234364651-234386454[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.8e-06 0.0023 20.9 5.8 1 23 631 653 631 653 0.98

2 8 0.00039 0.18 14.9 0.8 1 23 661 683 661 683 0.98

3 8 1.2e-06 0.00055 22.8 0.4 1 23 691 714 691 714 0.96

4 8 0.043 20 8.5 0.8 2 23 721 742 720 742 0.95

5 8 0.02 9.5 9.5 1.9 2 23 751 772 750 772 0.96

6 8 0.00013 0.061 16.4 0.1 1 23 779 802 779 802 0.95

7 8 1.6e-06 0.00076 22.4 1.6 1 23 808 830 808 830 0.98

8 8 1.4e-05 0.0064 19.5 4.5 1 23 836 859 836 859 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.8e-06	0.0023	20.9	5.8	1	23	631	653	631	653	0.98
2	8	0.00039	0.18	14.9	0.8	1	23	661	683	661	683	0.98
3	8	1.2e-06	0.00055	22.8	0.4	1	23	691	714	691	714	0.96
4	8	0.043	20	8.5	0.8	2	23	721	742	720	742	0.95
5	8	0.02	9.5	9.5	1.9	2	23	751	772	750	772	0.96
6	8	0.00013	0.061	16.4	0.1	1	23	779	802	779	802	0.95
7	8	1.6e-06	0.00076	22.4	1.6	1	23	808	830	808	830	0.98
8	8	1.4e-05	0.0064	19.5	4.5	1	23	836	859	836	859	0.98

Sequence Information

Coding Sequence: ATGAACTCGAGTTGTAGTGCTTGCGATAAAGCTACACGTGCATCGGATGCTGTTTTGTGCAACGGTGGTTGCAATAGTGTATTTCATGCTAAATGCTTGGATTTGACGGATTATGATATTAAAACAATTGCAAAGAAAAAAAGTGTAGTTATACTGTGTGATGAATGCAAAGTTGAGTTAACATCGATACAGCATATTGAAGtaaatataaatgatattaagaatAAGCTGGACAGTTATGTTCAAAAAGTTGATCAGGCATTGCAGATTGAAAGAAATAGTGGTATGAGTGAAAAAAAGTGGTATCTGAAATTAAGAAAGCAATTGATGGGAAAACAAAGTGCAGATAAAACGAAAGGTGAAGTTAAATCGAATTTGAATCCCGCGGAAACAGGTATACAGGTGTCAggaattaaaaaattacatagcGGTGCGATAATAGTGAAATGTGATAATGAGAAATCAGTGGAGATGTTGAAAAATGATGTGGAAGGTAAATTAGGTAAGAATTACAGTGTTAATCTGTGGAATGGTAGGAAACCAAGAATCAGAATTGATAATGTCATGGAGAAAATGGAAGAAAGTGATATAATTAATAGTTTAAAgaagcaaaatgaaattttacaaaattcccAAATGGCATTTAAGGCAATGTGGAAAAATaagtataaaagtaaatataaaaggcGTGATTCTTATAGTATAGTGATAGAATTAGACCTTGAATGCTTTAATGAAGTGATGAAAGTTGGAAAAATTAGCCTGGGATGGGATAATTGTGAAGTGAGTGATGCAATATACGTTAAAAGATGTTATAAATGCTTAGGTTTTAGTCATACGAGTAAAGATTGCAAAGCTGAGAAAAAAGAATGTAATCCAGATCTACTACTTTTATCAGAATCGCATATCACATCCAAAATTGAAGTCAGCGAGCTAAAGATTAAAAACTATGAGCTTATTAATTGTAATTCTGATTCGAGACATACAGGAGGAGTAATGatgtttgtaaaagaaaaaaatcaatacagGGTTGCGAGTATGGATAAGCAAGTGGTTCTGTACAGGTCTCCAGGCAAACCTGTTAGTGATTTTAAATCGTTTTATTCGAATTGGTTTTCCCAATCAATGGAGAATGAAAGTAATACTATTGTGactggtgattttaatataaattttctggGAACTGATAGTCATCACAATGTTATAAGAAATGTTATAGCTGATCAAGCTTTAAAGCAATTAGTTACACAACCAACTAGAACAACGAGAGACTCACAAACTCTAATTGATTACGTGCTCACAGGAGTGGATATTATGGATGTATCTGTAAATGTTGATAGGAATCACAAAATAACAGACCATGAGactctcaaaattaaaattaaagctagaAGAGATAAATCTGATAATAATTTCGAACTGGATGAGAGGGAGAAATCTGAAGATGAGGAGGAAAGCCGCTCTGACTGCCAATTAAAAACTGAAACACCTAGAGCAAATATTATACAATTCGAAGAAAATAAAACTGTAATGTTTGAAAAACGAAAGAAAAGAGGAAGGCCGAAAAAACCGCCAACTACAGAACATAGAACAGTTTCAGAAGATAAGGATATTTCACATAAAGAAGGGACATGTGCAAACAAAGTAAGGAGTAAGTCGTATAAGGAAACCGAATATCTTAAAAAATCTAAAGAAGACGatgcaaaaatcacaaaatatatGAAGTTGAAATGTGAACTTTGTGCCGCAGAGCACGATACTTTCGCAGAGATTAAGAAACATTATCGTATAGTTCATAAACGCAAAGGGTACGTAGTATGCTGCAACAAAAAACTTTATAAGCGAGTACTTATTTTGGAtcatataaataaacatttaaaccCGGATTACTTTAAatgtAATATATGCAAAAAGAGATTTTCTGACAAGCAGTGTTTAAAGAATCATATGATTCGTCATGAATCAGAGGATGTAAAAATGTTCAAATGTGAACAGTGTCCAAGAAGATATGCTAAACAATATTTACTAGATAATCATAGATTGATACATATTCCACAGGAGCAACGGGAATTCTTTTGTACTGAATGTGGGAAAGCGTTTCCTACAAATAATTTATTGCAAACCCATATACGGTATGTACACGAAAACGCTTATGGAAAAATGTGTCACATATGTGCAAAAGTAATTCGGGGCAAAGCAATGTTCGAAAAGCATCAATTAGAGCACGCAGGGATAGTTGAACCCAAGGTGCAATGCTTAAAATGTGGTGCATGGTTGAAACACGAGTATAGTTTAAAAAAACATATGAAACGGCATGCAGAAGAACTATATTCTCATGTGTGTAATGTTTGTGGAAAAGTGGCGCCATCGAAGGGAGCTTTGCGTAGTCACATTCAATATGTGCATGCATCAAAAAGAACTCACCAATGTAGTATTTGCGAAAAGGCTTTTAAAAAACCAATAAACCTCAagGAACATATGACAACGCATACAGGTGAAGTTCTATATACCTGTCCACATTGTCCAAAAACTTTCAATTCCAGTGCTAATATGCATTCACATAGGAAAAAGGTACATAGAAAAGAATGGGAGGAAAGCCGTAGAAATCGAGGATTACCCCAGGCAAATTGCAAAGATAGTGAAGATCAAGATGATGTCGAAGGTCAACAAACAGTCCTATTTTTTTGCGAAACAGGTGACGTACAAGAAGAATGTTGCTCAACGTACAAAAGTAAAGAAAACAGTCTTTGTGATAATACTGATAATACAGATATAGCTTACTAG
Protein Sequence: MNSSCSACDKATRASDAVLCNGGCNSVFHAKCLDLTDYDIKTIAKKKSVVILCDECKVELTSIQHIEVNINDIKNKLDSYVQKVDQALQIERNSGMSEKKWYLKLRKQLMGKQSADKTKGEVKSNLNPAETGIQVSGIKKLHSGAIIVKCDNEKSVEMLKNDVEGKLGKNYSVNLWNGRKPRIRIDNVMEKMEESDIINSLKKQNEILQNSQMAFKAMWKNKYKSKYKRRDSYSIVIELDLECFNEVMKVGKISLGWDNCEVSDAIYVKRCYKCLGFSHTSKDCKAEKKECNPDLLLLSESHITSKIEVSELKIKNYELINCNSDSRHTGGVMMFVKEKNQYRVASMDKQVVLYRSPGKPVSDFKSFYSNWFSQSMENESNTIVTGDFNINFLGTDSHHNVIRNVIADQALKQLVTQPTRTTRDSQTLIDYVLTGVDIMDVSVNVDRNHKITDHETLKIKIKARRDKSDNNFELDEREKSEDEEESRSDCQLKTETPRANIIQFEENKTVMFEKRKKRGRPKKPPTTEHRTVSEDKDISHKEGTCANKVRSKSYKETEYLKKSKEDDAKITKYMKLKCELCAAEHDTFAEIKKHYRIVHKRKGYVVCCNKKLYKRVLILDHINKHLNPDYFKCNICKKRFSDKQCLKNHMIRHESEDVKMFKCEQCPRRYAKQYLLDNHRLIHIPQEQREFFCTECGKAFPTNNLLQTHIRYVHENAYGKMCHICAKVIRGKAMFEKHQLEHAGIVEPKVQCLKCGAWLKHEYSLKKHMKRHAEELYSHVCNVCGKVAPSKGALRSHIQYVHASKRTHQCSICEKAFKKPINLKEHMTTHTGEVLYTCPHCPKTFNSSANMHSHRKKVHRKEWEESRRNRGLPQANCKDSEDQDDVEGQQTVLFFCETGDVQEECCSTYKSKENSLCDNTDNTDIAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -