Dlin024435.1
Basic Information
- Insect
- Dioctria linearis
- Gene Symbol
- -
- Assembly
- GCA_963930735.1
- Location
- OZ005740.1:237153713-237172343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3 5.9e+02 3.8 0.3 2 23 285 307 284 307 0.91 2 19 0.87 4.1e+02 4.3 5.6 1 19 349 367 349 368 0.95 3 19 0.049 23 8.3 1.7 3 23 384 404 383 404 0.88 4 19 0.0018 0.85 12.8 0.2 3 23 413 434 412 434 0.95 5 19 0.0049 2.3 11.4 0.5 5 23 444 462 440 462 0.91 6 19 1 4.9e+02 4.1 4.4 1 23 468 491 468 491 0.94 7 19 5.4e-07 0.00025 23.9 0.8 1 23 497 519 497 519 0.98 8 19 3.1 1.4e+03 2.6 0.2 3 23 530 550 528 550 0.91 9 19 0.15 70 6.8 0.9 1 23 566 588 566 588 0.95 10 19 2.1 1e+03 3.1 3.9 1 23 593 615 593 615 0.97 11 19 0.031 15 8.9 1.2 1 23 631 655 631 655 0.96 12 19 0.00055 0.26 14.4 0.5 2 23 662 684 661 684 0.94 13 19 0.00071 0.33 14.1 1.4 1 23 689 712 689 712 0.96 14 19 0.001 0.47 13.6 0.2 1 23 717 740 717 740 0.92 15 19 0.00014 0.068 16.2 0.2 2 23 744 766 743 766 0.96 16 19 0.069 33 7.8 1.6 1 23 772 795 772 795 0.92 17 19 0.0011 0.52 13.5 0.1 1 23 801 823 801 823 0.98 18 19 9.4e-05 0.044 16.8 3.2 1 23 829 851 829 851 0.98 19 19 0.0014 0.65 13.2 0.1 1 23 857 882 857 882 0.97
Sequence Information
- Coding Sequence
- ATGTCAGTGACAAAAGAGTCAGACACCTTGGACTTGCCAAAATGCGTACGATGTTCCTGCGAGCTTTTTGATGATTTTCAGTTGATTTTCGATGATACGGGTTTAGAACTCGAGCTCCAAAAACTGCTGTCGATATGTTTTGATTTGGATGTAAAAATTCGTTTTAATGAAATACAAGCACTATGCGATGTTTGCTTAAATGAATTAATTGATACGTATGACATTattcaaaggaatgaagaagaTGTAGAAAAAAACTTAAATACACGAGAAACTGATAAAAAGCTAATAAAAACAGAGGTTGGAGCAAATAGTTTTGGCGGTTCTGAATCTAATTACAATATTAAAGAAGATTATTTAGAAACAGCAAACGATGATTTGAAAATCGAACTAGTCTCGGATAAAACATGTTTAGTTGATAGCAGAAAACGAACACAACAGAGTAGCAGTagaagaaatttaaaagaaactaaGAAGAGGAAATTTGATCCAAAAACTTTACATATTGGGGAAGATGAGGATTGCTCCGACAGCGACCACGATATTAAGGAGCAAttgattgaaaataaagaaaatcacaaatctaaaaaaataaGAGCAGTTTCCAAAATAGAAGATACTAAGGAAGCTGAAGATTATGTTAAAAATGAGAATGATGCACTACTAATAAACAATGAAGTTAATTTGATGAAATATGAGATTGTGAAAAATTCCATAACAGGAAAAGACAGCGAAGAAGAATTCCATCAAATCGACTATCTAGACGAATATGATGAAGTAATTGATATTAAAGAATACAAAAGCAAAGTTCTTCAAAGCAGATTTCAAGATGTTTGTTTTCCCGAACCTATTAAATGCcgtctaTGTCCTAAACTTCTTGATAATCACATAGATCTCATGGCACATACGACAGAAGAGCATTGTGTAGAGGGCTTTGTGTATCCCTGCGTAATAGATGGAGAATGTGAGTCATTAAGCTCACAACAAGAGTTGTCGTTTCACTTGGTTTTTAAACATTATGATTTAGATGCATTAGTTATATATTGTAAGTGCCCTGAATGTGAACAACGATTCAATAATTTTCCATCTTACAATAAACACTGCTGttataaacaaacaaagaaagatGTCTCAAGAACTAGAGTGGATTGTGATCAATGCGGAAAGGCGTTTACATCAAATAAAAGGTATCGATTTCATTTGCAATTTCATTTAGAGAAACGACGCCCGAAGGCTTGCTTCATTTGTGATAAGCTCTTCAGGGATCAAGATGAATTTTTTGAGCATGTAATGTATGctcataaaaaaaatatcggtTATCTTTGTATAAGgtgTGATAGATCATTTACAACGGCTGCAACTTATAAAAACCACGAAAATGTACACAAACTTGATCGGCCATATACCTGTATACTATGTTCTAAGTCTTACTTGCATAAGCATTATTTAAGTGATCATAtgATCACAAATCACGGCGCAGAGAGTTCATTCAAATGTAATATTTGTGGAAAGTTCTTTATAAATAAAACTGCCCTTAATAATCACCTTATGTTGCATAACAAGGGTCAACCCACTGAAGTAATTTGCTGTAATACCTGCGGTTTCGTTGCTGAAAATGAAAAAGACGCTGAAAGTCATCTAGAAGAACACAAAGATAACGATGTTGGTACAATTACTGAAATAATCGACAAAGTGTATTGCTGCGAGTATTGTGAATCCGCCTACAATTCAGTGGAATCTTTGTTTGAACACCGAGCTCTGCATGCTGACAAAGAATATTGCTGCGATTTATGCTCATCAACCTACGAGGAATATAGAGAATTGAAATATCATAAATCTACGCATCCGAACTATATAGATAAGAGAAAAACTTTTCCTGTTGCTAGATACTATGTTTGTGACTTACCGGAATGTAAAAAAAGTTATTTGCAATGGATTTATCTAAAAGCTCATAAAAAGCATCATCAAGTTGCTAAAACAATTAAATGTCCAAAATGCAAGCAGACATTTCAGGAATTATCAGAGTTTCAGACTCACATGGAAGAAATTCACAAGGGCTCTGACTACTATTGCCAGTTCTGTGACAAATGTTTCGCATCAAAACTTGCTCTTGGAGTTCATATTGCCAGAAAGCATGATACagATCAATTTCCATGTGATGTATGTGATTATACTTACCCGAATAAAGAACTATTAGACAAACACAAGTCTGAATTGCACAAAGATTTGAAATGTCCGATATGCGGTGTAGTTTTGAAAACTCtcagaaattttcaattacatcGACGAGTGGTTCACGAAAAGGAAAAGCGATACTTTTGTCAATATTGCAATAGGGGATTTTTTAAACATTACGATGTAGTTGCTCACGAAAAAGCGGTTCatttaaaattgaagaaattcaagtgCGATATATGCCCGTATCGAGCTGCATACAAAGAAACTTTGAATGTTCACATTATGGCACATCGCAATGAAAAACcttatatatgcaaaatatgcaaAAAGGGATATCGCAAGAATTATTCCTTAAAACTTCATACGAAACGCCATATGAACATGAGAGAtTTCCCATGTCCTTATGAAGGATGCGAATATGCGTACGTTGAAAAAACAGCCTTAAATGCACACATACGTAAAAAGCATTCTGAAGAACGTAATGTCATAACACAAAATATAACACTCCGAAAATGTTTAGatttgaatttcattttagagACTGGATCACCTGCAAATAAAAGGCAACCTGGTCTAACACGTTCATTTTTTAATGTTCCCAAAACAGACGTCTtcgttgatgatgatgatggtttAGACTTTGCATCAGATGAGGAAGGGCTCAAAAAAATTTCACCTAAAAGAGAAACAGATTCAGATGAAAGCGATAGTGATGATCCTGGGGAAAGTACAGTCAAAAGTCAAGATACATCCCCAGCTGTAGTTGTCAGAAAAAATTTCAGTGATCATGACTATATGGTTATTggcaatgaaaataaaaacatttacgGAAGCATTATTGAAGATGGTGAATTTACAGAATGA
- Protein Sequence
- MSVTKESDTLDLPKCVRCSCELFDDFQLIFDDTGLELELQKLLSICFDLDVKIRFNEIQALCDVCLNELIDTYDIIQRNEEDVEKNLNTRETDKKLIKTEVGANSFGGSESNYNIKEDYLETANDDLKIELVSDKTCLVDSRKRTQQSSSRRNLKETKKRKFDPKTLHIGEDEDCSDSDHDIKEQLIENKENHKSKKIRAVSKIEDTKEAEDYVKNENDALLINNEVNLMKYEIVKNSITGKDSEEEFHQIDYLDEYDEVIDIKEYKSKVLQSRFQDVCFPEPIKCRLCPKLLDNHIDLMAHTTEEHCVEGFVYPCVIDGECESLSSQQELSFHLVFKHYDLDALVIYCKCPECEQRFNNFPSYNKHCCYKQTKKDVSRTRVDCDQCGKAFTSNKRYRFHLQFHLEKRRPKACFICDKLFRDQDEFFEHVMYAHKKNIGYLCIRCDRSFTTAATYKNHENVHKLDRPYTCILCSKSYLHKHYLSDHMITNHGAESSFKCNICGKFFINKTALNNHLMLHNKGQPTEVICCNTCGFVAENEKDAESHLEEHKDNDVGTITEIIDKVYCCEYCESAYNSVESLFEHRALHADKEYCCDLCSSTYEEYRELKYHKSTHPNYIDKRKTFPVARYYVCDLPECKKSYLQWIYLKAHKKHHQVAKTIKCPKCKQTFQELSEFQTHMEEIHKGSDYYCQFCDKCFASKLALGVHIARKHDTDQFPCDVCDYTYPNKELLDKHKSELHKDLKCPICGVVLKTLRNFQLHRRVVHEKEKRYFCQYCNRGFFKHYDVVAHEKAVHLKLKKFKCDICPYRAAYKETLNVHIMAHRNEKPYICKICKKGYRKNYSLKLHTKRHMNMRDFPCPYEGCEYAYVEKTALNAHIRKKHSEERNVITQNITLRKCLDLNFILETGSPANKRQPGLTRSFFNVPKTDVFVDDDDGLDFASDEEGLKKISPKRETDSDESDSDDPGESTVKSQDTSPAVVVRKNFSDHDYMVIGNENKNIYGSIIEDGEFTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -