Dlin106735.1
Basic Information
- Insect
- Dioctria linearis
- Gene Symbol
- -
- Assembly
- GCA_963930735.1
- Location
- OZ005744.1:179934128-179956530[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.96 4.6e+02 4.2 1.1 8 23 273 288 272 288 0.92 2 13 1.6e-05 0.0075 19.3 1.7 2 23 397 419 396 419 0.96 3 13 5.5e-05 0.026 17.6 1.9 2 23 522 543 521 543 0.96 4 13 0.00015 0.072 16.2 0.2 2 23 583 605 582 605 0.96 5 13 0.26 1.2e+02 6.0 0.0 2 21 622 641 621 642 0.92 6 13 3.4 1.6e+03 2.5 0.3 1 14 650 663 650 667 0.74 7 13 0.0067 3.1 11.0 2.3 1 23 780 803 780 803 0.96 8 13 0.0002 0.096 15.8 1.8 2 23 823 844 822 844 0.96 9 13 3.4e-05 0.016 18.2 0.1 2 23 880 902 879 902 0.95 10 13 1.1e-05 0.0052 19.7 2.0 2 23 918 939 917 939 0.97 11 13 6.1e-05 0.029 17.4 2.9 1 23 946 968 946 968 0.97 12 13 0.00081 0.38 13.9 1.4 3 23 976 996 974 996 0.94 13 13 0.00013 0.063 16.3 1.7 1 23 1005 1027 1005 1027 0.97
Sequence Information
- Coding Sequence
- ATGGATGGATTAGGCAAGAATATTTCGGTTGATTTCTCTAAAGAGGAACCAAAAGAtggaaatatatttgcaaaagaAGCTAAAAGGAAAGTGGAGGAAGACAATAATGTTATAAAGTTTTTAAAGAGTGAAGACATAAAGAATGAAGACAAAGAGCTGAGAGAAATAGGCAGCACCTTAGAAATGCTTAAACATCAAAAAGCCGTTGACGAAACTATGATAGAAAAAGGCGTTACCAAAACAGAGGACCCATCAATCATGGATTACGAAGAAGGGATCAGTTGTTTTGTTGTCACTGCTGCTGCAGAATTTCATGTAGTTCCCTTCAGGCAGAATAAAAGAAATTATCCGTGCATAGAAACTGTTGTCGAAGAaatcaaagaaaattttgaatgtgaAGCAAATGAAGATGTTCTACAGGAGAACAAGTCAGCCGTATGTGAGGATATTATCGAAATGAAGAATAATGACACagacaaagaagaagaaatgaagGCTGTCATCATGATAGTAGATGATGGGGACGAAGAAAATACACCCTTATCTACACTTAATTCCTCgactgaaaaatttgaaattaaggagATAAAAAAGGAGAGCATTTCCAATTATGACTCTTGCAATGCAGCTAATACTGATACTTCTCTATTCGAAGGAGTTCGTTATGAGCCCGGTAATTCTCGCATGATTGATTTTAGaagaacaaattttcttaaaactCTAGAGGAGTATCACAATTTGCAACAACCTAATTCAaacaatatgaaaacaaaaacgaAAGTATGGAGTGATCTCTGTTGTCGTCTTCTTAGTAAGCAGTCTTATAAGCATCTAAAATCATTAGAAACTCATATGAAAGGCCATGGTAAGTGGAATTTGCAGGAGGAGAAGGAGGACGAAGAAAAAATCCCTTTTTCTACACATAAGCCTTTCTccactgaaaaacttcaaataaatGAGACAAAAATGGATAAGGAGGTCGAAGGAAAAATACCTTTATCTACTCCTAAGCCTATCTCCACTGaaagacttaaaaaaaatgaGACAAAAAAGGATAAGGAGGACGAAGGAACAATACCTTTATCTACACCTAAGCCTATCTCCACTGAAAGACTTCAAAAAAAGGATAACATTTCCGATAATGAGTCTTGCAATGCAGCTGATATTGATAAAATATGGAGTAGTCTCATGTGTCCTCTTTGTCAGCGGTCTTATAAGCATCCAAAATCTTTAGAAACTCATATGAAAAAAATCCATGGTAAGTGGAATTTTCAGGTGGAGAAGAAGGATAAAGAAAAAACACAATTATCTACACGTAAGTCTACCTCCACTGAAAGACTTGAAAATAAGGACATAAAAGAgaataaaatttccaataataagTATTGCAACGCAACTGATATTGATATTTCTACTCTTTTTGAAGGAATTCATTATGAGTCTGGTCGTTCTCCCGAGGTTGATAGAAGAATCAATTTTCTTGAGATTCTCAAGAACTATCACAATTCTAATAAACCTaaaacaaataatacaaaaacaagaacaaaaatatgGGATGGTCTCTATTGTGCTATTTGTAAGCGATCTTATAAGCATCAAAAAGCTTTAGAAAATCATATTAAGAGCCATgAACCTGATGGAGATCTGATCCTCAAAAGTCACAAAAGTTCATGCTTTGGGCAATACTTTAAAGACAAGGAAGAAGCTGATATTCATTATAATAGATCTGTACATAGTGAAATTAATAAATGTCCGACATGCTACAAAATTTATACTGATCCTGATAAATTAGAAGCTCACAAACGATATGCCCACAAACAGAATATTCAAATTCCGACAGAAACGAATGATGAAAAATTCAGTGTTTGTAAGATATGTGCAATAAAATTTCCCAATGAAACTGCATTGTCCGATCATGAAAAATCTGGCTGTGCTACATCGCCTATATTCAAATGTGATGAATGTGAAAGATCTAAAAAacggtttccaaatcttgcaagagaAAGCTATAGTGATCATGCATTTTGGGCGGAAAATGgCGTCATCAACACAATGGACCCATCAATAATGGATTTCGAAGAAAATATCAGTTGTTTTGTTGTCACTGCTGCTGCAGAATTTCATGTAGTCCCATTCGGGCAGAATAAAAACAGTGATTCGTGCATAGAAACTGTTATCAAAGAACATATTAAATGTGAAGCAAATGATGACGAAGAAAATGCACCTTTATCAATACATAATTTATCGGCTGAAAAACTTGAAAATGAGAGCCTTTCTAATGATGAGTCTTGCAATGCAGCTGATACTGATACTTCTACTCCTTTCAAAGAAGTTCGTTATGACTGTGGTCATTGTCCCAGGGTTTATTTTAGAAGATTATCTTTTCTTAGGCATCTCAAGAACGATCATAATTCGCCACATGATTATCAGCTTCTTCAATCAAGTCGAAGAATATGGAGTGGTCTCTATTGTGCTCTTTGTAAGCGATCTTATAAACATCCAAAATCTTTAGCAAATCATATTAAGAGCCATGGACCTGATGCAGAACTGATCCAAATGGGTGCATGCTTTGGGCAATACTTTAAAAACAAGGAAGAAGCTGATAATCATAATAGATCTATacataatgaaattattaaatgcGAGATATGCGACAAAATATATACTGATTATGATAAATTAGAAGCTCATCAACAATATGCTCACAAGCAGAATATTCAGATTGCGAATGATGAAAAACGCTACTTCAGCGTTTGTCAGAAATGTGGAAAAAAGTTTACCAATAAAACTGCATTGTCCGATCATAAGAGATCTCACTGTGGTAGATCACCTCTATACAAATGTGATGAATGTGATACGACCTTCCGCAGTCATCAATCATTGCAAATTCATAAAACTATCCACACTGGAGAATTACCGCATTTATGTAATTTCTGTGGGAAAGCATTTCGGACATATGGACAAGTTAGAGTGCACGAAAAAGAACATAatgaagaaaaagacaaaaaaccATTTAAGTGTAGTATCTGTGCAAGAACATTTGTTCACCAGCAGAGTCTAATTAATCATCTTACACTGCATAAAGTCTGA
- Protein Sequence
- MDGLGKNISVDFSKEEPKDGNIFAKEAKRKVEEDNNVIKFLKSEDIKNEDKELREIGSTLEMLKHQKAVDETMIEKGVTKTEDPSIMDYEEGISCFVVTAAAEFHVVPFRQNKRNYPCIETVVEEIKENFECEANEDVLQENKSAVCEDIIEMKNNDTDKEEEMKAVIMIVDDGDEENTPLSTLNSSTEKFEIKEIKKESISNYDSCNAANTDTSLFEGVRYEPGNSRMIDFRRTNFLKTLEEYHNLQQPNSNNMKTKTKVWSDLCCRLLSKQSYKHLKSLETHMKGHGKWNLQEEKEDEEKIPFSTHKPFSTEKLQINETKMDKEVEGKIPLSTPKPISTERLKKNETKKDKEDEGTIPLSTPKPISTERLQKKDNISDNESCNAADIDKIWSSLMCPLCQRSYKHPKSLETHMKKIHGKWNFQVEKKDKEKTQLSTRKSTSTERLENKDIKENKISNNKYCNATDIDISTLFEGIHYESGRSPEVDRRINFLEILKNYHNSNKPKTNNTKTRTKIWDGLYCAICKRSYKHQKALENHIKSHEPDGDLILKSHKSSCFGQYFKDKEEADIHYNRSVHSEINKCPTCYKIYTDPDKLEAHKRYAHKQNIQIPTETNDEKFSVCKICAIKFPNETALSDHEKSGCATSPIFKCDECERSKKRFPNLARESYSDHAFWAENGVINTMDPSIMDFEENISCFVVTAAAEFHVVPFGQNKNSDSCIETVIKEHIKCEANDDEENAPLSIHNLSAEKLENESLSNDESCNAADTDTSTPFKEVRYDCGHCPRVYFRRLSFLRHLKNDHNSPHDYQLLQSSRRIWSGLYCALCKRSYKHPKSLANHIKSHGPDAELIQMGACFGQYFKNKEEADNHNRSIHNEIIKCEICDKIYTDYDKLEAHQQYAHKQNIQIANDEKRYFSVCQKCGKKFTNKTALSDHKRSHCGRSPLYKCDECDTTFRSHQSLQIHKTIHTGELPHLCNFCGKAFRTYGQVRVHEKEHNEEKDKKPFKCSICARTFVHQQSLINHLTLHKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -