Dlin024424.1
Basic Information
- Insect
- Dioctria linearis
- Gene Symbol
- -
- Assembly
- GCA_963930735.1
- Location
- OZ005740.1:237075686-237094983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.7 8.2e+02 3.4 0.5 2 23 267 289 266 289 0.90 2 19 0.78 3.7e+02 4.5 5.2 1 19 331 349 331 350 0.95 3 19 0.022 10 9.4 2.2 3 23 366 386 364 386 0.88 4 19 0.0022 1.1 12.5 0.2 3 23 395 416 394 416 0.95 5 19 0.1 49 7.2 1.0 5 23 426 444 422 444 0.91 6 19 0.019 8.8 9.6 0.3 1 23 450 473 450 473 0.96 7 19 0.0011 0.52 13.5 0.8 1 23 479 502 479 502 0.72 8 19 4.6 2.2e+03 2.1 0.3 3 23 513 534 511 534 0.87 9 19 0.025 12 9.2 0.6 1 23 551 573 551 573 0.97 10 19 3.2 1.5e+03 2.5 3.0 1 20 578 597 578 600 0.92 11 19 0.011 5 10.4 0.3 1 23 616 640 616 640 0.96 12 19 0.0001 0.049 16.7 0.6 2 23 647 669 646 669 0.96 13 19 0.00055 0.26 14.4 0.6 1 23 674 697 674 697 0.97 14 19 0.00021 0.1 15.7 0.3 1 23 702 725 702 725 0.92 15 19 0.0024 1.1 12.4 0.2 2 23 729 751 728 751 0.96 16 19 0.0011 0.53 13.4 0.6 1 23 757 780 757 780 0.95 17 19 0.0052 2.5 11.3 0.2 1 23 786 808 786 808 0.97 18 19 7.6e-06 0.0036 20.3 2.8 1 23 814 836 814 836 0.99 19 19 0.00033 0.16 15.1 0.8 1 23 842 867 842 867 0.98
Sequence Information
- Coding Sequence
- ATGTCAAGCACTCTGGACCTCCCAAGTTGCCTGCGGTGCTCCTTGCAGCTAGTTGATGATTTCCAGTTGATATTTGATGATATGGGCTTAGAACTGGAACTACAAAAATTGCTGGCAATATGTTTCGATATGGATATAAAAATTCGATTAAACGAAATACAAGCACTATGTGATGGTTGCTTAAATGAATTGATTGATACATatgatataattcaaaagaatgaaGAAGATGGTGGGAAGTCACTAAAAGCAGAAGAAAAtgataaaatacaaattaaagaagagattgaATCAAATAGTTCTAAGTGTGATGAATCTAATTGCGATATAACAGACGACAATTCTGAAGAAGAGGAAACGAACTTAATTGATAACAGAAAACGGGCTCGACAGAGTTCTAGTAAAGAAGATTATGAAGGAactaaaaaacgaaaaattgaCTTAAagaccataaataataataaaaaagtcgAAGACTCTGCGGAAGATGTGGAAAacattgaggaaaaaaaaactcgaaaatcAAAAGatacagaaaaacaaaaagcttcTTCAAGAACGGAAAATACTAAAACGGTTGAAGATCATTGTAAAAATAACGAAGACGAACAATTAATAAGCAAGGTTGATATAGAAAAAAATGAAGCTGAGAGTAATTCCATAACAGGAAGAGACTGCGAAGAAGAATTCCATCAAATCGACTATCTAGACGAATATGATGCAGTAATTGATATTAAAGAATACAAAAGCAAAGTTCTTCAAAGCAGATTTCAAGATGTTTGTTTTCCCGAGCCGATCAAATGTCgcttgtGTCCTAAACTTCTTGACAATCACATAGACCTCATGACACATACGACAGAAGAGCACTGCGTGGAAGATTTGTCATATCCGTGTGTAATAGATGGAGAATGTGATTCATTAAGCTCACAGCAGGATTTGTCATTTCACTTAGTTTTTAAACATTATGATTTAGATGCGTTAGTTATTTATTGTAAGTGCCCCGAATGTGAACAAAGATTCAATGACTTTCCATCTTACAATAAACACTGTTGttataaacaaggaaaaaaagaTGTCTCAAGAACTAGATTGGATTGTGATCAATGTGGGAAGACCTTCACATCAAATAAAAGGTATCGATTTCACTTGCAATTTCATCTAGAAAGACGTCGCCCGAAGGCATGCTTCATTTGTGATATGTTCTTCAGGGATCAAGATGAATTTTTTGAACATGTAATGTACGCTCATAGAAAGAATATCGGATTTCTTTGTATAAGGTGTGATAAATCATTTACTACggctgaaatatataaaaatcacaaaaaaatacaTAAACTTGATCGGCCATATGCCTGTGTACTATGTTCTAAGTCTTATTTGCGCAAGAACTCCTTAAGTGACCACATGatTATAAATCACGGCGCAGAGAGTTCATACAAATGTCATATTTGTGGAAAGgtctttataaaaaataaaactgccCTTGATAATCACCTTATGTTGCATAACAAGCATGGACCGTCGGAGGTAATTTGCTGTAATACCTGCGGTTTCGTTGCTGAAAATGAGAAACAAGCTGAGAGCCATTTGGATCTAGAACACAAAATTAACGATGATGTTGGTACAATTACTGAAATAATCGACAAAGTATATTGTTGCGAGTATTGTGAGTTCGCTTACAATTCAGTCGAAGCTCTATTTGAACACCGAGCTGTGCACGCTGataaaaaatattgttgcgaCTTATGTTCATCAAAATTCGAGGAGTATAAAGATTTAAAATGGCATAAGCCCTCACATCCGAACTATGTAGATAAGAGACAAACTTTTCCTGTTGCCAGATATTATGTTTGTGATTTACCAGAATGCAAGAAAAGTTATTTGCAATGGGTATATTTAACAGCTCATAAAAAACAACATCAAATTGCAAAAACAATCAAATGTCCAAAATGCAAGCAAACGTTTGAAGAAGAATCAGAGTTTCAGACTCACATGGAAAAAATTCATAAGGGCTTTGACTACTATTGTCAATTTTGTGATAAAATCTTTGCATCAAAGCTTGCTCTTGGAGttcatatgtccaaaaaacatgatacagATCAATTTCCATGTGATGTATGTGATTATACTTTTCCGAATAAAGAACTATTAGACAAACACAAGTCTGAATTGCACAAAGACTTGAAATGTCAGATATGCGGTATAGTTTTGAAAACTCTCAGAAATTTTGATTTACATCGAAGAGTTGTACATGACAAGGAGAAGcgatatttttgtcaattttgtaaTAAGGGATTTTTTAAAAACTACGCTCTAATTGCGCACGAAAGAGCGGTtcatataaaattgaagaaattcaaatgCGAACTATGCCCGTATCGGGCTGCCTACAAACAAACTTTGAATGCTCACCTTATGGCACATCGCAACGAGAAACCTTTTAAATGCGAAATATGTAAGAGGGGATATCGCAAGAACTACTCCTTAAAAATTCATATGAAGCGTCACTTGGATATGAAAGAtTTTCGATGTCCTCATGAAGGATGTGAATATGCATTTGTTGAGAAAACAGCTCTAAATTCTCACATTCGTAAAAAACATTGTGAAGAACAGGATGGATCACCTACAAGTAAGAAGTTTGGTAGTCGAACGCGATCAGTTTTTAATGTACCCCAAACAAATATCTtcgttgatgatgatgatggtttAGATTTCGGATCAGATGAGGAAGACCTCAAGATAAGATCTACAAGAGAAGAAGATTCAAATGATAGTGATGATCCGGAGATTAGCATCGTCCAAAATCTAGTTACATCACCAGCTGTAGTGGTCAGAAAAAATTACAGTGATCATGACTATATGGTTATAGACAATAAAAACCAAAGCATTTATGAAATCATTATTGAAGGATAG
- Protein Sequence
- MSSTLDLPSCLRCSLQLVDDFQLIFDDMGLELELQKLLAICFDMDIKIRLNEIQALCDGCLNELIDTYDIIQKNEEDGGKSLKAEENDKIQIKEEIESNSSKCDESNCDITDDNSEEEETNLIDNRKRARQSSSKEDYEGTKKRKIDLKTINNNKKVEDSAEDVENIEEKKTRKSKDTEKQKASSRTENTKTVEDHCKNNEDEQLISKVDIEKNEAESNSITGRDCEEEFHQIDYLDEYDAVIDIKEYKSKVLQSRFQDVCFPEPIKCRLCPKLLDNHIDLMTHTTEEHCVEDLSYPCVIDGECDSLSSQQDLSFHLVFKHYDLDALVIYCKCPECEQRFNDFPSYNKHCCYKQGKKDVSRTRLDCDQCGKTFTSNKRYRFHLQFHLERRRPKACFICDMFFRDQDEFFEHVMYAHRKNIGFLCIRCDKSFTTAEIYKNHKKIHKLDRPYACVLCSKSYLRKNSLSDHMIINHGAESSYKCHICGKVFIKNKTALDNHLMLHNKHGPSEVICCNTCGFVAENEKQAESHLDLEHKINDDVGTITEIIDKVYCCEYCEFAYNSVEALFEHRAVHADKKYCCDLCSSKFEEYKDLKWHKPSHPNYVDKRQTFPVARYYVCDLPECKKSYLQWVYLTAHKKQHQIAKTIKCPKCKQTFEEESEFQTHMEKIHKGFDYYCQFCDKIFASKLALGVHMSKKHDTDQFPCDVCDYTFPNKELLDKHKSELHKDLKCQICGIVLKTLRNFDLHRRVVHDKEKRYFCQFCNKGFFKNYALIAHERAVHIKLKKFKCELCPYRAAYKQTLNAHLMAHRNEKPFKCEICKRGYRKNYSLKIHMKRHLDMKDFRCPHEGCEYAFVEKTALNSHIRKKHCEEQDGSPTSKKFGSRTRSVFNVPQTNIFVDDDDGLDFGSDEEDLKIRSTREEDSNDSDDPEISIVQNLVTSPAVVVRKNYSDHDYMVIDNKNQSIYEIIIEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -