Basic Information

Insect: Dioctria linearis
Gene Symbol: -
Assembly: GCA_963930735.1
Location: OZ005740.1:35012070-35013934[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00015 0.073 16.1 2.8 3 23 255 275 253 275 0.96

2 12 0.00028 0.13 15.3 3.0 1 23 281 303 281 303 0.97

3 12 7.2e-05 0.034 17.2 2.4 1 23 309 331 309 331 0.97

4 12 5.2e-06 0.0024 20.8 0.3 1 23 337 359 337 359 0.98

5 12 0.0011 0.52 13.5 4.2 2 23 366 387 365 387 0.96

6 12 0.00016 0.074 16.1 4.9 1 23 393 415 393 415 0.96

7 12 2.2e-06 0.001 22.0 2.4 2 23 423 444 422 444 0.97

8 12 3e-06 0.0014 21.5 2.9 1 23 450 472 450 472 0.98

9 12 4.9e-06 0.0023 20.9 2.1 1 23 481 503 481 503 0.98

10 12 9.7e-05 0.046 16.8 2.8 1 23 509 531 509 531 0.99

11 12 2.9e-05 0.014 18.4 3.7 1 23 537 559 537 559 0.97

12 12 0.0035 1.7 11.9 0.4 1 23 565 587 565 587 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00015	0.073	16.1	2.8	3	23	255	275	253	275	0.96
2	12	0.00028	0.13	15.3	3.0	1	23	281	303	281	303	0.97
3	12	7.2e-05	0.034	17.2	2.4	1	23	309	331	309	331	0.97
4	12	5.2e-06	0.0024	20.8	0.3	1	23	337	359	337	359	0.98
5	12	0.0011	0.52	13.5	4.2	2	23	366	387	365	387	0.96
6	12	0.00016	0.074	16.1	4.9	1	23	393	415	393	415	0.96
7	12	2.2e-06	0.001	22.0	2.4	2	23	423	444	422	444	0.97
8	12	3e-06	0.0014	21.5	2.9	1	23	450	472	450	472	0.98
9	12	4.9e-06	0.0023	20.9	2.1	1	23	481	503	481	503	0.98
10	12	9.7e-05	0.046	16.8	2.8	1	23	509	531	509	531	0.99
11	12	2.9e-05	0.014	18.4	3.7	1	23	537	559	537	559	0.97
12	12	0.0035	1.7	11.9	0.4	1	23	565	587	565	587	0.95

Sequence Information

Coding Sequence: ATGGATGCCCTTTGTCGCTGTTGCCTAACAGAACACCCAAATATACACAACATTTTCGAAGATGGGATACTGGAAAAACTTCGATTATGTTCAAATGTTACAATTTCAAAAGGTGATAGCCTACCGAAAATAGTTTGcgaaaattgtttagaaaaaatcgaaaattcttATGAATTTCGTGAAACTTGTGAAAGATCAGATTCCTTTTTAAGAGATTGGATAGAAAGGTTAGAAAAGAATGACTTTAGAAAAGAAGGTGGATCGAAAATCGAAAAACCAACTGATGACAATTGTGAGGGCAGCGtgACAGGAACATTAAAATCAACAGTTATTGGTAGTTTTTCTATGAAAAAGGAAGAGCATATCATAGATACATATGAAACCGACTTAGTAGAATGCTTAAGTACAAAAAATTATGGGATGATTGATCCAAAAGAGCAGACACCTAGTAGTGAGAATGCAACTGTAACTTTCATGTATAATTCTGAAGTCGGGAATAGTTCAACGATTGAGAATATTGACTTTAAAATTATAACGGAtatcgaagaagaagaagaacaagaagaaatagaaataaaacactCCACCAGCCTTGAAATTTATACTTGTGAAAATGACGATGATTTACTTCAGGAAGAAGATGAGTATATTGCTAAAGAAGACAACTTATGTAAAGAACATGCTAGTTCTGTTGAAATTACTGTGAAAGTTAAAAAAGactatgaaaatacaaaaaaaaagcaaaaagttaAACGAGTTCATTGCAGAATTTGTAGTGAAACATTCTCTTCCAAAAAAGCTCTAAAGAAACACGAGAATTCCCATGCAATAAACGGGCAATATCCTTGTAAACATTGTAGTAAAACATTTAAATTCATTCCATACTTACAAAATCATTTAGTTCGACATACTGGATTAAAAAAACACGAATGCACTTTTTGTAACTCAAGATTCTATGATTCATCTTCACTTAAAGCTCATGTTCGAATTCACACTGGAGAAAAGCCTTATGAATGTGGAGCATGCAAAAAGCGTTTTGCACAAAATTCTCAACTAAAGGTTCATGCAAGAGTGCATAGTGATGAAAAACCAGTGGAATGTGATAtatgtttcaaaaaattttcacataatGGTCTTTTACATACgcataaaaaattacatttatcggTAAGAGAACATATCTGTACTATCTGCCAGAAAGGATTTATATTATCACATCATTTAAAAAGACACATGGAACTACATCAGAatccaaaaatgaaatgtcaatGCAATGAATGCGGAAGAAAATATTCAAATAGTACTGGTTTAGCTTATCACATGCGAACACATACGGGTGAGCGTCCATATAATTGTACGATATGTTCCAAGAATTTTGTATCTAGTTCTGGTCTTTGTACTCACTTAAGGACTCATTCTAAAGAGAAACCACCTCGAAAATTTGAATGTCCTCACTGTGAGAAACGTTATTTCGTTAAAAGTGAATTGCGTGTTCATTTACGATCACATACAGGAGAACGGCGCTTTgaatgtaaaatatgtaaaaaaagatttttacaaAACGTTCATATGGTTGTCCATATGCGCACCCATACAGGAGAGAGACCCTATCCTTGTTCAATTTGTGGGAAATGTTTTGCGAGCTCATCAAAGCGTAAAACACACATGTTTTATCATACgggagaaaaaaactttttctgtagTATTTGTGGAAAAGGTTTTGCACAGGCTGGTATTAGGAATTCGCACCAAAAAAGACACACATCCAAAGCGAAAAGTGCATCAAACGACCAGAATAAAACGTCGAGTTAA
Protein Sequence: MDALCRCCLTEHPNIHNIFEDGILEKLRLCSNVTISKGDSLPKIVCENCLEKIENSYEFRETCERSDSFLRDWIERLEKNDFRKEGGSKIEKPTDDNCEGSVTGTLKSTVIGSFSMKKEEHIIDTYETDLVECLSTKNYGMIDPKEQTPSSENATVTFMYNSEVGNSSTIENIDFKIITDIEEEEEQEEIEIKHSTSLEIYTCENDDDLLQEEDEYIAKEDNLCKEHASSVEITVKVKKDYENTKKKQKVKRVHCRICSETFSSKKALKKHENSHAINGQYPCKHCSKTFKFIPYLQNHLVRHTGLKKHECTFCNSRFYDSSSLKAHVRIHTGEKPYECGACKKRFAQNSQLKVHARVHSDEKPVECDICFKKFSHNGLLHTHKKLHLSVREHICTICQKGFILSHHLKRHMELHQNPKMKCQCNECGRKYSNSTGLAYHMRTHTGERPYNCTICSKNFVSSSGLCTHLRTHSKEKPPRKFECPHCEKRYFVKSELRVHLRSHTGERRFECKICKKRFLQNVHMVVHMRTHTGERPYPCSICGKCFASSSKRKTHMFYHTGEKNFFCSICGKGFAQAGIRNSHQKRHTSKAKSASNDQNKTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00455365;
90% Identity: iTF_00455365;
80% Identity: -