Dlin056799.1
Basic Information
- Insect
- Dioctria linearis
- Gene Symbol
- -
- Assembly
- GCA_963930735.1
- Location
- OZ005742.1:30190586-30197200[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-05 0.005 19.8 2.8 2 23 249 270 248 270 0.92 2 12 2.2e-07 0.0001 25.1 0.3 1 23 276 298 276 298 0.98 3 12 4.8e-05 0.023 17.7 2.2 1 23 304 326 304 326 0.98 4 12 1.1e-06 0.00051 22.9 1.0 1 23 332 355 332 355 0.96 5 12 0.0014 0.64 13.2 3.0 1 23 363 385 363 385 0.97 6 12 0.00055 0.26 14.4 5.0 1 23 393 415 393 415 0.98 7 12 1.1e-05 0.0051 19.8 1.3 1 23 421 443 421 443 0.99 8 12 0.00011 0.054 16.5 3.8 1 23 449 471 449 471 0.98 9 12 3.4e-05 0.016 18.2 1.7 1 23 479 501 479 501 0.98 10 12 0.00018 0.083 16.0 0.7 1 23 509 532 509 532 0.95 11 12 0.00099 0.47 13.6 0.0 2 23 541 563 541 563 0.93 12 12 0.0064 3 11.1 1.3 2 23 569 590 568 590 0.96
Sequence Information
- Coding Sequence
- ATGAATCTTAAAGTGGATATAAACGTGTGTAGAGTTTGCTTGAAATCCGACAATGGAGTATCAATTTTCAGCGATATCACTTTATTAGAAAAGTTCCAGTACATTACACAGTTGAAGATAAGAGAAAACGATGGAATGCCAGTAATTCTTTGCGATATGTGTGTAACACGACTTAAAGTTGCCCACGAATTCCGGAAGCAAGCAATCATTTCCGACACACATTTGCGGGCTTTCATCAGCAAAGTCAATAGTCAATTTAAGGAGGTAGCTAACACTACGACTACCAATGTCAAGGATACTATGATAATGAACGAAGATGAAATGCAATTACTTATGGAAGCAGGATATAAGCCAGAGACAGAAACTATTGAGGACACCCCAATTACAATTCTTACGAAAATCAAATCTGATAATGTCATTGAAGAGCAACAAGAACAGCATCTTCATGATCATCACGACGAAAATATTGAAGAGGACATGTCCCAGCATATTGAAGAAGATTTTGGTGGATACATACAGGAGGAAGATGATGGGAACGAAAATCCTTTCTGTGATGAAGTTGATGATGAAGTGGGGCATCTTGAGGAAGAAGAAAATATGTCCAGCGGAATGACCATTGATAACACATCAACAAATGAGGATGTTCTTAATGAAGGCAATATATTGCCGAGCCATGATTACATAATGTCAGACTTGAAAGAAGAAGATCCTTTAGAGAAACCGAAAAATGAAAATCGTTCACATATTTGCATAAAATGTGACAAGGATTTCAGTACAAAAACGAATCTAATGAGGCATATGCTAACGCATGATGGTGTTAAGCCATTCCAGTGTAATATTTGTGGGAATGCTTTCACTCAGAATGGATCTCTTAAACAGCATATGCTTATTCATTCTGGAGAAAGGCCACACAAGTGTAGTGTATGCGGTAGAGGATTCACACAAGCTAAATCGTTGGTCTTCCATATGAGAAGGCATACTGGTGAAAAGCCCTTTTCATGCGAAAAATGTGGTCTTACATTCCGCCAGAAGGATGGACTAAAGCGACATGTTCTAATGAAACATTCCGGAACCCCAGTTGAAATTCATATGTGTACCATATGTAACAGGATTCTACAGTCGAAATATTCCTTATCGCTTCACATGAAGAAACATTTAGGACATCAGGACAACAGTCATAAATGTGATGTGTGTGAAAGAACCTTCTCAACCAAAGCCTCACTGGAATGTCACCAACGGCAACATACAGGTGAAAAGCCATTCAAGTGTGACACTTGCGCAAGAGAATTCTCCCGTAAAAGTACACTTGCAACTCATGCGAAAACTCACCTTGATGATAAACCTTTCAAGTGTAACACATGTGAAAAAGGATTTGTACAGAAACATCAGGTTGAAGCTCATATGCACAACCATAAAAATCAACCAGCAAAGAGTTTTCAATGTGGGAAATGCTATAAAAGTTTTGCTATAAAGCGAAATCTCCTGCAACACTTGAGGAATCATAATCGAGAATCTATGACCATTTTTAAGTGTGAAGAATGCAGTATAGCGTTTAATACAAAACGAGGACTAAAATTGCACCGATCCAACGAACACAAAGAAGCTGTTTCTGATTTGAATGAATGTGATATTTGCAATATTCCTTTTGTCTCTGTGAACGATCTTAATCAGCATATGATTGCTATCCACGATACCATCGACGACAAGTGTGAAATCTGCCTGCAGCATTTCACATCTAAGAAACTCATGGAGGATCATCTCTTAGAACACGAACTTATGACCATAAGCTGA
- Protein Sequence
- MNLKVDINVCRVCLKSDNGVSIFSDITLLEKFQYITQLKIRENDGMPVILCDMCVTRLKVAHEFRKQAIISDTHLRAFISKVNSQFKEVANTTTTNVKDTMIMNEDEMQLLMEAGYKPETETIEDTPITILTKIKSDNVIEEQQEQHLHDHHDENIEEDMSQHIEEDFGGYIQEEDDGNENPFCDEVDDEVGHLEEEENMSSGMTIDNTSTNEDVLNEGNILPSHDYIMSDLKEEDPLEKPKNENRSHICIKCDKDFSTKTNLMRHMLTHDGVKPFQCNICGNAFTQNGSLKQHMLIHSGERPHKCSVCGRGFTQAKSLVFHMRRHTGEKPFSCEKCGLTFRQKDGLKRHVLMKHSGTPVEIHMCTICNRILQSKYSLSLHMKKHLGHQDNSHKCDVCERTFSTKASLECHQRQHTGEKPFKCDTCAREFSRKSTLATHAKTHLDDKPFKCNTCEKGFVQKHQVEAHMHNHKNQPAKSFQCGKCYKSFAIKRNLLQHLRNHNRESMTIFKCEECSIAFNTKRGLKLHRSNEHKEAVSDLNECDICNIPFVSVNDLNQHMIAIHDTIDDKCEICLQHFTSKKLMEDHLLEHELMTIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00455362;
- 90% Identity
- iTF_00455362;
- 80% Identity
- -