Basic Information

Insect: Dioctria linearis
Gene Symbol: -
Assembly: GCA_963930735.1
Location: OZ005742.1:30046787-30050268[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.8e-07 0.00018 24.3 0.6 3 23 181 201 180 201 0.98

2 12 2.3e-07 0.00011 25.1 0.8 1 23 207 229 207 229 0.99

3 12 1.6e-08 7.5e-06 28.7 3.4 1 23 235 257 235 257 0.99

4 12 8.4e-06 0.004 20.1 0.4 1 23 263 285 263 286 0.95

5 12 2.8e-05 0.013 18.5 1.5 1 23 294 316 294 316 0.97

6 12 1e-05 0.0048 19.9 4.6 1 23 324 346 324 346 0.98

7 12 7.1e-07 0.00034 23.5 1.8 1 23 352 374 352 374 0.99

8 12 5.3e-06 0.0025 20.8 0.8 1 23 381 403 381 403 0.99

9 12 0.00021 0.1 15.7 4.3 1 23 411 433 411 433 0.98

10 12 0.00024 0.12 15.5 1.2 1 23 441 464 441 464 0.95

11 12 0.001 0.48 13.6 0.1 3 23 474 495 473 495 0.96

12 12 0.011 5.1 10.3 2.2 2 20 501 519 501 522 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.8e-07	0.00018	24.3	0.6	3	23	181	201	180	201	0.98
2	12	2.3e-07	0.00011	25.1	0.8	1	23	207	229	207	229	0.99
3	12	1.6e-08	7.5e-06	28.7	3.4	1	23	235	257	235	257	0.99
4	12	8.4e-06	0.004	20.1	0.4	1	23	263	285	263	286	0.95
5	12	2.8e-05	0.013	18.5	1.5	1	23	294	316	294	316	0.97
6	12	1e-05	0.0048	19.9	4.6	1	23	324	346	324	346	0.98
7	12	7.1e-07	0.00034	23.5	1.8	1	23	352	374	352	374	0.99
8	12	5.3e-06	0.0025	20.8	0.8	1	23	381	403	381	403	0.99
9	12	0.00021	0.1	15.7	4.3	1	23	411	433	411	433	0.98
10	12	0.00024	0.12	15.5	1.2	1	23	441	464	441	464	0.95
11	12	0.001	0.48	13.6	0.1	3	23	474	495	473	495	0.96
12	12	0.011	5.1	10.3	2.2	2	20	501	519	501	522	0.87

Sequence Information

Coding Sequence: ATGTTCTTAAAGTTTGTCGCTAACGTGTGCCGTGTTTGTCTAGAACCAAAAGGAGAAGTAAATATCTTTGAAAATGGACATGATGAGGAATTTCGTTTTATTACTCTGCTAGATATATCTGAGAAAGAAGAACTCCCATCGCATCTTTGCAATAAGTGTGTGGGTCGCCTTAAAATTGCGTACGAGTTTAAAAATCAGGCTATATCATCCAATACTCACTTGCattcttttataaattcaataaatacaaaattttcgaCGATAGTAGAATCCCATAAAAAAGAACTTCACACAAGTATTGAAGAGATTCAGGCCTTCTTATCGCCAGAAGAAGTATCAACTCTGCTGAAGCCAATTAAAAATAATACGCAGGACGAAGTTAGCGATTCCATCGAAATCAAATATATAAATGACCAGGCTGAAGAGGAACATATTGATAACGAAGATTATGTAGGTAATGAAGAATATGAAATTACCATAGAAGAAGTAAAACCAAGTGAAAGCATCAAAGCGAGTGTCAGCCGTGAGGATTTTTCATTCTGTGCAGAATGTAACAAACCTTTTTCGACAAAACCAAACCTAATGAGACACATGCTGACGCATTCCAAAGCAAAACCATATCAATGCTCTATTTGTGGAAATCGTTTCACTCAGAATGGTTCTTTAAAGCAACACATGTTGTCTCACACAGGTGAGCGACCTTTCAAATGTGAGATTTGCAAGAAGACATTTACCAGGAAGACTATGCTACGCATTCATATGCGAACGCATACGGGAGAAAAGCCATACACATGCGATGAGTGTAATATTTCTTTTACAGTTAAGGGAGGCCTTAGGAAACACGTTGCAATTCATCATGAGGGTACTGCAAAGGATCAGTTCCCATGTACAATATGCGACAAAGTATTACGTTCGAAGCATTCCATGAATATGCATATGAACCTTCACAAGGGAAATGATGAATGCAAACATGAGTGTCTCATTTGTAtgaaatcttttactaacaagTATAACCTAAAGTATCACATGAAAACCCATGAAGTGAAGGAACATTTTAAATGCTCGATATGCGATAAGTTATTCAATTCAAAGGGAAACTTGAGGTACCATTTGAACACACACAGCAAAGTGAAGGAAGATTACAAATGCTCCATGTGTGATGAACAATTTCCAAAGAAATACCAACTCTTGGCTCATTTGCAGAGCCATGAAAAAAGACGAGAATTGAATTATGAGTGCAGAAAATGTCATAAGAAGTTTACAGTCATACATAACCTTATAGAGCACCTTCGGGATCATGTGGATAATAACGGAACAGTTTTTCGATGCACCTACTGTACAGTTGCATTCAACGTAAAACGAAATTTAAAGTTGCATTTGGCTAATTTCCATAAAGATGAAGTCCCGGATTTGAATGACTGCGATATTTGTGATATTCCATTTGTTACGGGCGCTCATTTGAACGAGCACATCGCAAAGAAACATGATATCGTAGACGAAGTGTGCAGTGATTGTAACGAAACCTTCACTTCGAAAAAGTTATACCTGGAACACTGTATTTCCCATGACATAATAGAGTTAAATAAAAGGTCAAAATAA
Protein Sequence: MFLKFVANVCRVCLEPKGEVNIFENGHDEEFRFITLLDISEKEELPSHLCNKCVGRLKIAYEFKNQAISSNTHLHSFINSINTKFSTIVESHKKELHTSIEEIQAFLSPEEVSTLLKPIKNNTQDEVSDSIEIKYINDQAEEEHIDNEDYVGNEEYEITIEEVKPSESIKASVSREDFSFCAECNKPFSTKPNLMRHMLTHSKAKPYQCSICGNRFTQNGSLKQHMLSHTGERPFKCEICKKTFTRKTMLRIHMRTHTGEKPYTCDECNISFTVKGGLRKHVAIHHEGTAKDQFPCTICDKVLRSKHSMNMHMNLHKGNDECKHECLICMKSFTNKYNLKYHMKTHEVKEHFKCSICDKLFNSKGNLRYHLNTHSKVKEDYKCSMCDEQFPKKYQLLAHLQSHEKRRELNYECRKCHKKFTVIHNLIEHLRDHVDNNGTVFRCTYCTVAFNVKRNLKLHLANFHKDEVPDLNDCDICDIPFVTGAHLNEHIAKKHDIVDEVCSDCNETFTSKKLYLEHCISHDIIELNKRSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00455357;
90% Identity: iTF_00455357;
80% Identity: -