Basic Information

Insect: Dioctria linearis
Gene Symbol: -
Assembly: GCA_963930735.1
Location: OZ005742.1:237689937-237691842[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.5e-06 0.0026 20.7 0.7 2 23 192 213 192 213 0.97

2 12 0.00018 0.083 16.0 0.4 1 23 220 242 220 242 0.96

3 12 6.9e-08 3.3e-05 26.7 2.0 1 23 258 280 258 280 0.99

4 12 8.3e-07 0.00039 23.3 0.5 1 23 289 311 289 311 0.98

5 12 2.9e-06 0.0014 21.6 1.3 1 23 317 339 317 339 0.98

6 12 0.00027 0.13 15.4 7.2 1 23 345 367 345 367 0.98

7 12 5.3e-06 0.0025 20.8 0.5 1 23 373 395 373 395 0.95

8 12 0.0032 1.5 12.0 2.8 1 23 401 423 401 423 0.98

9 12 2.5e-06 0.0012 21.8 0.1 1 23 429 451 429 451 0.98

10 12 1.1e-06 0.00051 22.9 2.3 1 23 457 479 457 479 0.98

11 12 2.9e-07 0.00014 24.7 0.4 1 23 485 507 485 507 0.98

12 12 0.0022 1 12.5 0.5 1 23 513 535 513 535 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.5e-06	0.0026	20.7	0.7	2	23	192	213	192	213	0.97
2	12	0.00018	0.083	16.0	0.4	1	23	220	242	220	242	0.96
3	12	6.9e-08	3.3e-05	26.7	2.0	1	23	258	280	258	280	0.99
4	12	8.3e-07	0.00039	23.3	0.5	1	23	289	311	289	311	0.98
5	12	2.9e-06	0.0014	21.6	1.3	1	23	317	339	317	339	0.98
6	12	0.00027	0.13	15.4	7.2	1	23	345	367	345	367	0.98
7	12	5.3e-06	0.0025	20.8	0.5	1	23	373	395	373	395	0.95
8	12	0.0032	1.5	12.0	2.8	1	23	401	423	401	423	0.98
9	12	2.5e-06	0.0012	21.8	0.1	1	23	429	451	429	451	0.98
10	12	1.1e-06	0.00051	22.9	2.3	1	23	457	479	457	479	0.98
11	12	2.9e-07	0.00014	24.7	0.4	1	23	485	507	485	507	0.98
12	12	0.0022	1	12.5	0.5	1	23	513	535	513	535	0.96

Sequence Information

Coding Sequence: ATGCAAGTAGTTACTCTAGAAAATCAGAATATTAAAATCTGCAGAGCATGCATGGGTAAAAGTGAGAGTTTACAACATATTTTCGATATAGAAGTAAATGGTATACGAATTTCGACAATGTTCTCAAGCACTTCAATGATCACCATCAGTCCAATGGATGGGCTCCCAGAACAAATTTGTAATCGTTGCATGAGTGCACTCATAAGTGCATTTGAATTTCAACAAATGTGTATCAATTCAAATGAACTACTGAGATCAACTATCCCTATAATGTACAAAACTGAGGAAAAACTAGTTTCTGTGCTGAGAACTGCTGATGTCTCATATTCAGAAAATACTGATCAGCCAAAGGTAAAAGATCTCGTAACTAACCATTATGAAGGTAATGCAAATAAGCAGGAGAAAAATGTTGAGCAGCATATTAAAGAAGAGGATTCGCTGTCCAATGATAATATCTACATGTGCCAGCAAATAGATGCTAGTCCGGACCAAAAAGAAAATACTACGATTGAGGATGATGAGAATGAGTCAAACAAGAATGACAAGAGCTTACTAGTACCTCTTGGCCTTGCAGAGTGTCCTGTATGCCAAAAAACATTTGATCGATTATATCGCCTAAAACGGCACTTAAATGTGCACAACCCTGAAGGTAAGCCGTATGAGTGCGAAACATGTAAACAACGTTACGCATCTGAGAGTCTTCTAAGGAGACACTCAATTGTTCACAGTGAATTGCTTTCACAAATGGCGACAATCAATAAACCAGGTAGTTTTAAGTGCAAAGAGTGTCCCAGAGTATTTAAAAAGCAAGAATCACTTTCGTCTCACATGCGTACACACAAAAATATGACTAGAAACAAGAAGTACCCTTGCGAATATTGCCCGAAAGTATTTTCTAAACTGAATTTGCTAACAAGACACGTTAAGTCACATTCTGAAATGAAACTCCATAAGTGCaatatatgtgaaaagacatTTTCCTTAAGTGCGCAACTTATAGATCACATAAATAAGCACAACGGTTTTAAGGCTCATGTATGTCATATTTGTCAGAAAGGTTTTCAACAATCGTGCACCTTAAAAGATCACCTGCGTACACACAGCGGAGAGCAACCGTTCCTATGTTTTGAGTGTGGAAAAGCCTTTAACAATGGAAGTAATTTGCGTCAACATCTTATCAGACATACCGGAGTTAAACCTTTTCACTGTCCAGAATGTCCTAGTCGATTTACATGCAAAGGTGGCTTAAAGTCCCACATGGCCACCCATTCCACAATTAAACCATTTATTTGTGATATATGCGGTGCCGCGTTTACAAAACCATATTCCCTGGCGAAACATAAACGTATTCATACTGGTGAAAAGCCATATGCCTGTGAAGTTTGTAACATGAGATTCAACTCATCTGATCATGTGAAACGACACATGAGGACTCATACAGGAGAGAAACCGTATCCATGTAAATTATGTAATCGTGCCTTTGCCCAAAGCAATGACTTAGTAAAGCATATGAGATCTCATGTTGGTGAAAAAACCTACCAGTGCGAAGAATGTCCGGACGCATTCCGATTACACTCAGAACTAAAAGCTCACAATCAAGAGCATTTCAAACAGCAAAGAATTACAGCGGGCTCAGATACGAATTCAAATTCACAGAGCAGTTTAGTTACAAGTGTAGATATCTCTGTACAAGTTTTTgatgaaatatattga
Protein Sequence: MQVVTLENQNIKICRACMGKSESLQHIFDIEVNGIRISTMFSSTSMITISPMDGLPEQICNRCMSALISAFEFQQMCINSNELLRSTIPIMYKTEEKLVSVLRTADVSYSENTDQPKVKDLVTNHYEGNANKQEKNVEQHIKEEDSLSNDNIYMCQQIDASPDQKENTTIEDDENESNKNDKSLLVPLGLAECPVCQKTFDRLYRLKRHLNVHNPEGKPYECETCKQRYASESLLRRHSIVHSELLSQMATINKPGSFKCKECPRVFKKQESLSSHMRTHKNMTRNKKYPCEYCPKVFSKLNLLTRHVKSHSEMKLHKCNICEKTFSLSAQLIDHINKHNGFKAHVCHICQKGFQQSCTLKDHLRTHSGEQPFLCFECGKAFNNGSNLRQHLIRHTGVKPFHCPECPSRFTCKGGLKSHMATHSTIKPFICDICGAAFTKPYSLAKHKRIHTGEKPYACEVCNMRFNSSDHVKRHMRTHTGEKPYPCKLCNRAFAQSNDLVKHMRSHVGEKTYQCEECPDAFRLHSELKAHNQEHFKQQRITAGSDTNSNSQSSLVTSVDISVQVFDEIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00455356;
90% Identity: iTF_00455356;
80% Identity: -