Dlin002829.1
Basic Information
- Insect
- Dioctria linearis
- Gene Symbol
- -
- Assembly
- GCA_963930735.1
- Location
- OZ005740.1:4072298-4075522[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8e-05 0.0085 19.1 1.0 1 23 276 298 276 298 0.99 2 13 0.51 2.4e+02 5.1 5.0 3 20 307 324 305 328 0.92 3 13 0.00084 0.4 13.8 0.1 1 23 339 361 339 361 0.96 4 13 0.00034 0.16 15.1 2.9 1 23 367 389 367 389 0.98 5 13 4.5e-05 0.021 17.8 0.6 1 23 395 417 395 417 0.98 6 13 2.6e-05 0.012 18.6 3.8 1 23 426 448 426 448 0.97 7 13 5e-06 0.0024 20.8 0.2 2 23 455 476 454 476 0.97 8 13 1.5e-07 6.9e-05 25.7 2.5 1 23 482 504 482 504 0.98 9 13 3.2e-08 1.5e-05 27.7 0.3 1 23 510 532 510 532 0.98 10 13 3.6e-07 0.00017 24.4 0.9 1 23 538 560 538 560 0.99 11 13 2.4e-05 0.011 18.7 0.4 1 23 566 587 566 587 0.98 12 13 4.8e-06 0.0023 20.9 2.4 1 23 593 615 593 615 0.98 13 13 7.7e-06 0.0037 20.2 0.5 1 23 621 643 621 643 0.98
Sequence Information
- Coding Sequence
- ATGAGTGAAGAACAATTAATGATAATTGATATAAACGTAAACGACGCTCTAAACCTAAGTAGCGACTTTAATCAAGATTTAGAAAGTGAAAATGCTGAATGCGCATCCATCCTGAGCCAGGGCCTTGTCCCTGGACCACACCAAACTGATGATCTCTTCGGTGACAGTAATATTCTTGCGGTTAAAACTAATTTCCAAGCACAATTGGAAAAAATCTGCAGATGTTGTGCCACAGAAACGGAAGacttaaattcaatttttgatccAGATGATTGTATTGCATCGATGATTACCATTTTAACAGCAATTCAGCCAAGACGAGATGATGGATTACCGTCGCAAATTTGTATAGACTGCCTAGGGTTACTAGCGAAAAGCACTAATTTTAAGCAAAGAGTAGAAACAGCCGACAGGACATTAAGGCAATTGCTAGCAATGGATATTTGCCAAGTAAAAGTTTTACAAAGGGCAGATGTAGAACAGTTAGCAAGAAAGCTGACAAAAATGACTGAATTAGATTTAATCATTTTTGGAACTGATATGCAGCTTCCTGATCCCGATAATATCGACTACATCGAGGAAAACTCTCTGGATATATCTAAAGCTGAAGAAGAGacacaagaagaggaggaagaagaagaagaaacaccAGAGGAGGAGGAAGACACACAAATGTTTCCTACTCCTGAAGTAAATTCAAATACCGAGAGCGAAAATGAAGAGACTCATTTAAAAGGCAGGGAAATTGCTCATCATCCTGGAGTcaacgaaaacaaaagaaataaaaagcgtacaaaagtaaaacaaaaatcaatacgCAAAGCATTCCAATGTGCTATttgtaaatataaatttacaGATCCCCAATTATACATGTCTCATATCAAAACTCATCCAGAAAGTAAAATTCTCTACGGATGTACAGTTTGTAgcagaaatttcaaaaatcgaaCATCTATGGAGAACCATTTTCAATGTCATCACCCCGCTGAAATCCAAGATTCACCTAAACAATATAAGTGCGAGGATTGTGAAATGAGCTTTAGTGTAGAAAATGATCTTTACATTCATGGATCAATTCATGAAACTGGGGATAAATTCGTTTGTCGAAAATGCGAAAAGGAATTTCCAAATTGCTTAAAACTGAAAAGACATGTGCGAATACATTTCGAGGACAAGCCGTATAAGTGCGAGCTATGTGGAAAAGGTTTCCCTGAGATGGGCTCACTGACAAGACATTTCCGTTTCCACACAGGagagaaaagagaaagaaaacatatttgtaaCACTTGTGGCAAAAGTTATTATGACTCACATTCCTTGGCAGTTCATAAAAGAACGCACACCGGTGAGAAACCGTGGATTTGTAAAGAATGTGGACGGGGATTCATTGATTCCAGATTGCTCAATTCTCATTTAAAAACTCACAAAGAAGAGAAGATGTATGCATGCGATAGATGCGGTAAAAGGTTCACTCATCAAAGTACGCTCACAACTCATATTCGTGTGCACACCGGTGAGAAGCCTTATATTTGTGTTATATGCAACAAGTCATTCATTCAATCGTCTAATTTAAATTTACACATGAGGGTCCATTCAGGAGAGAAACCATATCAGTGCAAAGTATGTTCCAGAGCCTTTGCGAGCTCTTCAACGTTAACAACACACGTTCGAACACATACCGGAGAAAAGCCCTATGTCTGCCCACAATGTGGTAAGCCTTTTGCACGTCATGATCTTAGTGCCCATCTGAGAACTCACACTGGTGAAAAACCGTTCAGATGTGAAATTTGCTCTCGAAAATTTACTACATCAGGACAATTGAGTCAACACAAGCGTTCCCATAGTGGCGAGAAGCCGTACATTTGTAAAATTTGTGATAAGAGCTGGGCAACATCAGCATACCTTAGGAAACATATGAAAATGCATAATGTCCCGCCTGAAAATGGACAGCAGACTATTCgggtagagaaaaaaaaatttgatggtGGTGATGATGATGAGAATGCACGATTTTTCTCCATCCAAGATGATGACTTTCTGTCAGATTCAGAACTAAACGAGCATGCAGTTCTAGTCAGTGACTTATTGGCGGCTGTTGTTGACAGCAGTGTGGATAACATGGATAATAGCATTGCAGTTGGTATCGATCAAGCCATTGATCGAAATATTTTAAGACTGCAGTGA
- Protein Sequence
- MSEEQLMIIDINVNDALNLSSDFNQDLESENAECASILSQGLVPGPHQTDDLFGDSNILAVKTNFQAQLEKICRCCATETEDLNSIFDPDDCIASMITILTAIQPRRDDGLPSQICIDCLGLLAKSTNFKQRVETADRTLRQLLAMDICQVKVLQRADVEQLARKLTKMTELDLIIFGTDMQLPDPDNIDYIEENSLDISKAEEETQEEEEEEEETPEEEEDTQMFPTPEVNSNTESENEETHLKGREIAHHPGVNENKRNKKRTKVKQKSIRKAFQCAICKYKFTDPQLYMSHIKTHPESKILYGCTVCSRNFKNRTSMENHFQCHHPAEIQDSPKQYKCEDCEMSFSVENDLYIHGSIHETGDKFVCRKCEKEFPNCLKLKRHVRIHFEDKPYKCELCGKGFPEMGSLTRHFRFHTGEKRERKHICNTCGKSYYDSHSLAVHKRTHTGEKPWICKECGRGFIDSRLLNSHLKTHKEEKMYACDRCGKRFTHQSTLTTHIRVHTGEKPYICVICNKSFIQSSNLNLHMRVHSGEKPYQCKVCSRAFASSSTLTTHVRTHTGEKPYVCPQCGKPFARHDLSAHLRTHTGEKPFRCEICSRKFTTSGQLSQHKRSHSGEKPYICKICDKSWATSAYLRKHMKMHNVPPENGQQTIRVEKKKFDGGDDDENARFFSIQDDDFLSDSELNEHAVLVSDLLAAVVDSSVDNMDNSIAVGIDQAIDRNILRLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00455352;
- 90% Identity
- iTF_00455352;
- 80% Identity
- -