Dlin106313.1
Basic Information
- Insect
- Dioctria linearis
- Gene Symbol
- -
- Assembly
- GCA_963930735.1
- Location
- OZ005744.1:172672968-172673651[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-08 2.9e-05 26.3 0.0 3 41 19 57 18 60 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGGAAATACGTATCAAAACTTGGATCACGCAAATATGGGTATTGTGAAAATGATATGCAATTAGCTATCAATGACGTCAATCAAGgttGCCTTTCTATTACAAAAGCCACtgcaaaatacaaaatttctaaagGATCACTTGTAAATAGGCTTAAAGGgagaaacattaaaaaatgcgGCTGTCCATTAGCATTCACCGATGAAGAAGAAAACGTTTTCGTAAGCCACATAATTGAAGTTGCAAATTGGGGTTTTCCATTTGAAACTACCGACCTTCGTCAACTTGCAAAAATGTATTTGGATAAagctggaaaaaaaataaaagaatttggtAGGAACAATCTTCATAGCAAGGAATGGGCTTGGAGATTTATGCAacgacataaaaataaaatttctaattgtATGTGTCAAAATATTGTTAGAGCAAAAGCCGCTGTAACACCCGAACAATTTAATGCTTATTTCGACAGTCTAAAAGAGACTTTAAATGAAATTTCCGATGATGGAGCTGATAAATACGTTCCTCCTGAACGTATATATAACTATGATGAAACAAACTTATCAGGCGACCCTGGTGTGAAAAAGTGCATATTTAAGAGATGCCGATCGAATTAA
- Protein Sequence
- MPRKYVSKLGSRKYGYCENDMQLAINDVNQGCLSITKATAKYKISKGSLVNRLKGRNIKKCGCPLAFTDEEENVFVSHIIEVANWGFPFETTDLRQLAKMYLDKAGKKIKEFGRNNLHSKEWAWRFMQRHKNKISNCMCQNIVRAKAAVTPEQFNAYFDSLKETLNEISDDGADKYVPPERIYNYDETNLSGDPGVKKCIFKRCRSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -