Dqua007111.1
Basic Information
- Insect
- Dinoponera quadriceps
- Gene Symbol
- Prdm10
- Assembly
- GCA_001313825.1
- Location
- NW:88467-95623[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.025 1.5 8.7 0.3 2 23 537 558 536 558 0.95 2 12 0.0022 0.13 12.0 0.9 2 23 571 592 570 592 0.95 3 12 4.8e-05 0.0028 17.3 4.1 1 23 609 631 609 631 0.99 4 12 0.0077 0.46 10.3 2.0 2 23 640 661 639 661 0.96 5 12 0.0019 0.11 12.2 0.7 1 23 668 690 668 690 0.98 6 12 0.001 0.059 13.1 4.2 1 23 697 719 697 720 0.95 7 12 0.012 0.7 9.7 6.1 1 23 725 747 725 747 0.98 8 12 1.6e-05 0.00092 18.8 3.9 1 23 753 776 753 776 0.96 9 12 0.0018 0.11 12.3 1.8 1 23 804 827 804 827 0.96 10 12 0.14 8.1 6.4 0.7 1 16 849 864 849 866 0.89 11 12 0.45 26 4.8 1.2 5 23 879 898 877 898 0.94 12 12 0.0015 0.087 12.6 3.4 3 23 936 957 934 957 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGGCCATTCCTTCGAGATAGCCACATCCTTGAACATCGACAGGGGAGTTGACACTTCGGTCAACTGGCCTACCGATCACTCGTTCTCCTCGTCATTGTACGAACAACCGAAGAAGCTGAACAACAACAGGCTCCTATTTTTGACTGTGGAATATGTGGAGGACCAACCGCGAGACTATTCCCGGTTGTTTCCCACGTACGAGCAGATCTTCTCCCCGCGGGCAGCTTCCCCTCTGTCTGAATTTGAGCATCGTGTCAGCCCGTTCGACCCGAACATGAGCTCAGCCGCTAGATACTCCCCTACACCTGTCCAACTGCCGTCTTCGCCCTTTCACAATTCCGTCGTTGTACTTCAGGGCCCATCCTCTCCCTTGATATCTCAACCCGAACCAAATATGAGgacgaatattaattatgtaactcAGCTGGCTCATCAGTCGATCGATGCTCAAGCTGTAGCTCAGACGGATGCTTCCACGGATTTTGTCGACAATGGGAACGAAGAAGGGCTGGTGTCTGGTGTCAACAGTGAATTAATTTTGATGCAAGAATCTGCACCCGAGTTGGAATCTTCGTCGACTCCCTTGATGTTAACGGGAATAGCAGGCACAGACTTTGCTCTCAGCAGGGACTTTCTGGTGATGCAGGACGATCAAATAAACGTCATCAACACGTTCAAAAATCAAAACATGGAGATAGAGGACAATCAATCGGAGGGTGTTTCAATCTGTAACGCTCTGCCACCAGTAACGGAAGGTTTAAACAAGGAGGACAATAATGAATCCGTGCTGGAAATCTGTGACAAGGAAATCCAGCAGATCACCAAAGAGGCGCCTCCGtctgaaaagaagaaaactaTTGAGAAGAAAGACGTAAGGAGATCCAAACGACGTATAACGGACAAGAAAGACTTTTGGTGCGACGAATATGACGGTAACTGCGCCAAAGACGACAGCTGTAACTTGCACGACGTGTGCACTATCGCGGATCAACCGGTACCATCGCGTGCTGTAGCAACACTGCCAGGATCATATCTTTCGTTAAACAAACTATCCACTTCGCACGCTGCAGCGGATGGAGTGACTTACGGAGTATTTACGAAGCGTGACATCCGAAGACGCACACAATTCGGGCCCATAGAAGGCGTACTGTGCCCTTACGACGGCTCGTCATTCGAAAATGCTTTACCACTGCTCTACGAAACTGAGAGTGGCGAATTCTTGAAAGTAGACGTCTCCAACGAGAACACTTCAAATTGGATGCGTTTCGTGCGACCAGCACTGACATACAAAGAGCAGAACTTGATAATCTGTCAGCAGAAAGACGGAATAGTGTTTCTGACTAACAGAAACATCTCGCCAAAGGAAGAGCTGAAGGCAGGTCCTAGTCCTGACTATGCGATTCGCAGGAATTTACCCATACTCAGACCAGACACAAAAGACGAGAAAGAAATCGCCAATCAAACGCCCGCGTGGCCGCGCTTGGACGGCAACTTTTACAATCGACGCGTAAAGGTGTTCCGCGGCAGGAACataaaagagaaggagaactCGCAGCAGAACAAGCGCAAGGAGTGGAAATGTTCCGCCTGCAGCCTCTTCTTCAGGAAGTCGTCTCTGCTTAGTTTGCACGCGCTCGTCCACCTGTCCAGCGAGATCAAAATCGAGAATCAAAACTCCACGTGTCCGCAGTGCGGATCGGAATTCCACAAGCAGAGCGAGCTGGCGAATCACGTGTCTCAGCACGGGCGTACGGTGCCGCCCAAGGCGAAGAGATTAACTCCCTTACGTAGGTACAAGTGTTCAAAGTGTTACAAGCGTTTTACTACGAAGATACGATTACAACAGCACTTGTTGACGCATGGTGCTGAGGACCAAAAACCACTGCCGTGCAATATCTGCTTGAAGCGATTTATGAATAACTCCGCGTTGTCCTGTCATCTGAAAACGCATAAAGAGAACAAGCAAGTCTTCGAGTGCCCGATGTGCAGGCAGCTGTTTTGCCAAGGCGCGATGCTGAAGGATCACATTGAGACGCACAGAAATCAGGACGGTATATTCAACTGCCCTCACTGCCAGCGAACGTTCATTAAATACTCGGTTATTCGCAAACATATCCGGGCGCATCATTACGAGAGGAAGCACAAGTGTCAGCACTGCGCGAAGCATTTCCCATCGGTCGACAAATTGCGCTTGCACCTGCTGAAACACTCAGACCACAGGGAGTTTCATTGTGCGAACTGCGGTAGACGGTTTAAGAGGAAGGACAAGTTGAAGGAACACATGACTAAGATACATAGCCCGCAAACGGGCGAGGAACAAATGACACAGAAGAAATTTGTGCCAAAGGTGAATCCGAATGATTACAATCGCTTCATTTTCAAATGTCATCAATGCCTGGTGGGTTTCAAGCGCAGGGGGATGCTGGTGAATCACCTAGCAAAGCGGCATCCCGACGTCGCTCCGGAGTCTGTGCCAGAATTAAATTTACCGATTCTGCGGCAAACCAGAGACTACTACTGCCAATATTGCGACAAGGTGTCGTTTCGTCGGACAGATTTGTACATAAGcgaagaaatgaaattattgtCGCTTCACACATGTGTGTGCTTTCAGGTTTACAAGAGTAGCAGCAAACGTAAAGCGCATATTATGAAAAACCATCCGGGCGCAGCATTGCCGCCCAGTAACCGGCAAAAGGAGTCGGAATTCTCGGGGCTACCGAATCCAAGCTTCAGCCAAGCGGTGGGCAGCATCACTACCACTCCTCAGAATTGCCAGTGGTGTCACAAACAGTATGCCAGCAAAgCGAAGCTACTGCAACACCAGCGCAAGAAGCACGCGCACCTGATGGAGCCGGCGGATCAGATACCGCGTTCGCGAAACCGGCCGCCGCAGAATCAAAATCAACCGCCCGCGCTCGCCAACAACTACGTGATATCCGACTACCTGCAAGGGTGCGACTTGGACGGGGATTTTCTCAAGCAGAAGATAATCAAAATCTCGAGCGACGTTGATCTGATAAGTAACGGCATGGAGGTCGGAGTCAGCCAGCAGTTTGTGCGTATGCGCGACATACGCTGA
- Protein Sequence
- MDPRGPPEGAPGHSFEIATSLNIDRGVDTSVNWPTDHSFSSSLYEQPKKLNNNRLLFLTVEYVEDQPRDYSRLFPTYEQIFSPRAASPLSEFEHRVSPFDPNMSSAARYSPTPVQLPSSPFHNSVVVLQGPSSPLISQPEPNMRTNINYVTQLAHQSIDAQAVAQTDASTDFVDNGNEEGLVSGVNSELILMQESAPELESSSTPLMLTGIAGTDFALSRDFLVMQDDQINVINTFKNQNMEIEDNQSEGVSICNALPPVTEGLNKEDNNESVLEICDKEIQQITKEAPPSEKKKTIEKKDVRRSKRRITDKKDFWCDEYDGNCAKDDSCNLHDVCTIADQPVPSRAVATLPGSYLSLNKLSTSHAAADGVTYGVFTKRDIRRRTQFGPIEGVLCPYDGSSFENALPLLYETESGEFLKVDVSNENTSNWMRFVRPALTYKEQNLIICQQKDGIVFLTNRNISPKEELKAGPSPDYAIRRNLPILRPDTKDEKEIANQTPAWPRLDGNFYNRRVKVFRGRNIKEKENSQQNKRKEWKCSACSLFFRKSSLLSLHALVHLSSEIKIENQNSTCPQCGSEFHKQSELANHVSQHGRTVPPKAKRLTPLRRYKCSKCYKRFTTKIRLQQHLLTHGAEDQKPLPCNICLKRFMNNSALSCHLKTHKENKQVFECPMCRQLFCQGAMLKDHIETHRNQDGIFNCPHCQRTFIKYSVIRKHIRAHHYERKHKCQHCAKHFPSVDKLRLHLLKHSDHREFHCANCGRRFKRKDKLKEHMTKIHSPQTGEEQMTQKKFVPKVNPNDYNRFIFKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVSFRRTDLYISEEMKLLSLHTCVCFQVYKSSSKRKAHIMKNHPGAALPPSNRQKESEFSGLPNPSFSQAVGSITTTPQNCQWCHKQYASKAKLLQHQRKKHAHLMEPADQIPRSRNRPPQNQNQPPALANNYVISDYLQGCDLDGDFLKQKIIKISSDVDLISNGMEVGVSQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885376;
- 90% Identity
- -
- 80% Identity
- -