Basic Information

Insect: Dinoponera quadriceps
Gene Symbol: -
Assembly: GCA_001313825.1
Location: NW:423195-426854[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.7 3.9e+02 1.1 0.0 2 20 35 53 34 56 0.69

2 9 0.17 9.9 6.1 0.3 2 23 336 358 336 358 0.92

3 9 1.7e-06 9.8e-05 21.8 1.2 1 23 374 397 374 397 0.98

4 9 1.3e-05 0.00077 19.0 2.9 1 23 420 442 420 442 0.98

5 9 9.4e-06 0.00056 19.5 2.2 2 23 448 469 447 469 0.96

6 9 9.9e-05 0.0058 16.3 6.8 1 23 475 497 475 497 0.98

7 9 0.00013 0.0075 15.9 3.5 1 23 503 525 503 525 0.97

8 9 1e-05 0.00059 19.4 2.4 1 23 531 553 531 553 0.97

9 9 0.0013 0.079 12.7 4.3 1 20 559 578 559 579 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.7	3.9e+02	1.1	0.0	2	20	35	53	34	56	0.69
2	9	0.17	9.9	6.1	0.3	2	23	336	358	336	358	0.92
3	9	1.7e-06	9.8e-05	21.8	1.2	1	23	374	397	374	397	0.98
4	9	1.3e-05	0.00077	19.0	2.9	1	23	420	442	420	442	0.98
5	9	9.4e-06	0.00056	19.5	2.2	2	23	448	469	447	469	0.96
6	9	9.9e-05	0.0058	16.3	6.8	1	23	475	497	475	497	0.98
7	9	0.00013	0.0075	15.9	3.5	1	23	503	525	503	525	0.97
8	9	1e-05	0.00059	19.4	2.4	1	23	531	553	531	553	0.97
9	9	0.0013	0.079	12.7	4.3	1	20	559	578	559	579	0.94

Sequence Information

Coding Sequence: ATGTGCGCACGACTCTTGGCCTGCCCGTTGTGCTCTCAGCCTGGATTTCTGACACTCGACGCGCTGCGAGCTGGACTCGTGAGTGTGGCGACCCGGCCCCTCGTATGCCCTGTCTGCAACGAAGTGCTGTTGGGCATAGACAAATTAACTATACACCTGTTCGGTCATACGATCAATCTGAGCAACAACAATGCGACGACGGAGTCGTCCAAGCACGTAGACGTTGTCCTCCCCGACGAGCGTCTGATCGCGCTCCATAATCTGCACAATGTCGCCCCGCAGAACTGGAACGCGCTGATGAAGATGCAGCAATTGAACAAGTCGCAAGCTTCGAGCGGGACGAGCAGTCGCGCGGAGTCGTCGGGGAGCAAGGTCCATGTTACGAACTCACAGTCCCAAGTGCAGAATCAAGACTCGCTTGGCAAGAATACGGCTCAGCAGTTCGTGTCGGATTACAATTACGATGTGATCAAGATCAATATCCGGCCGAGCGAGGATCACGGCGCCGCGTTAGGGGCAACTGCGAGCCTGCAAGAGGTACTGAAGACACACTGTGTCGCGCAATCCTTCTGCAACGACAACGTTAAGCAGCTGAGCGTGTCCCGAGAAAATGCACCGACGGAGAAGAGCGTGTCGGACTTCGGCAACGACTGGATGGAGAAGCGGAGCTGCGGGCCTGCTGTGGACGCTAACGTCTACCAAGGTATCGAGGCGGGTTGCATGGAGTCGAGCAACGGTCAACACATCGCGAAGGAGAGACCGATGATGAGTTTAATGGACAAAGAGAACGACCTGACCGACTTCCAGTCGATCCAGGACGCGGTGCCGATTTGCTGCATGGACACGTCGCTGGAACAACGGCACGACGACAAGCAGAGTCCGCGCGATACGAAGGAACCGATCGCCGAGGATCGAGACAACGGTTCGAAGGAGCAGAGGAGGATACTGGCCGTGCAGACGTGCGCTAAGATCTTCCCAAGCGCCACGCCGAAGGAGAAGACTGAGAGGTGCGACGTATGCGGCTTCCACTTCCCCGACGTCAACATCTTGACACTGCACCAACAGCTGGTGCACGAGCAGGAGTCGGAGAACGCCTCGGGAGGGAAGGTTCTGAAAAATTACTCGTGTCACCTGTGTTCGAAAGTATTCAAGATGAGAGGCAGCTTGATGGTGCACATGAGGGTTGTGCACATCGGCCATAATTTAGgttCTTTACCTAAAGACGGCCAGATCGAAGTGGCACACGGCGAGGTCGGCTACAACTGCCCAACGTGCGGGAAGAGATTCAAGAAAGAGCAACACGTGATACAGCATCTGAAAACGCACGAGGGCAAGCAGTGGGAGTGCGACGTCTGCAGCAAGATGTTCACGACCAAGTACTTCCTGAAGAAGCACAAGCGACTGCACTCGGGCGAGATGCCGTACAAGTGTAAGATATGCGACAAGAGCTTCACCTTCCAACAGTCGTATCACAAGCACAGGCTCTACCATAAGGACGACAAGCCTCACACCTGCGCGACCTGCGGCAGATCGTTCAAGGAGCTCTCCACGTTGCACAATCACGAGAGAATACATACCGGGGAGAAGCCGTTCGCGTGTGAGACATGCGGGAAGTGTTTCCGCCAGCGTGTTTCGTATTTAGTCCATCGTCGAATTCACACGGGAGTGATGCCTTATAAGTGCACAATGTGTGGCAAAAGCTTCCGATACAAGGTGAGCCAACGAACGCACAAGTGTCCCGCGCAGGCAGCACCGGTTGGTGCAGCGCAGCAATCGCCGGACGCGATTGCACAAAAGAATAACGACGAGACGACCAGGCTGCAGGCTAACAACACTTTACAACAATCCGTAGGGGAATCGATGATTAATACCGTTGATAAGGAGGAGAACAAATTTGTACTTATAATAAATGCTGAAGGACAACATGTTCTAGCACTGCAGTCGGAGATAAACAATATATCtacggagaaagaaggaggaaagcTGGAAGGCGCCGATAACACAGACAAAAATTCGAGAAGCAAGACGTGGAGCACTGACGATCTTGATTCCTTCAAGCTCAAGGAGCCTTCTGAAACAATCGAGAAGACGCAGTCGGAGaagataaatatgaaaaacgACTTTCTCTCGCTGATGATGTCGCGTCTTGAGAACAGCGTGTCCTCTTCCACCTTTGAAATGGAACATCTGAGAGTATCATCGCCCAAGCAGAAAGAGAATTTGATAGACTCTTATACTGACTTTTCGCAGATCTCTGATAACGCACAGATGAATATCGTGGATTCAAGAGTGGAGCAGAACCTTACTCGCGACAAGGACGTGTCCGATTCTTTGCAAACCATAAACGTAGAATCATTGAAGGAATTACTGTACAGTATTGATAGAAAATAA
Protein Sequence: MCARLLACPLCSQPGFLTLDALRAGLVSVATRPLVCPVCNEVLLGIDKLTIHLFGHTINLSNNNATTESSKHVDVVLPDERLIALHNLHNVAPQNWNALMKMQQLNKSQASSGTSSRAESSGSKVHVTNSQSQVQNQDSLGKNTAQQFVSDYNYDVIKINIRPSEDHGAALGATASLQEVLKTHCVAQSFCNDNVKQLSVSRENAPTEKSVSDFGNDWMEKRSCGPAVDANVYQGIEAGCMESSNGQHIAKERPMMSLMDKENDLTDFQSIQDAVPICCMDTSLEQRHDDKQSPRDTKEPIAEDRDNGSKEQRRILAVQTCAKIFPSATPKEKTERCDVCGFHFPDVNILTLHQQLVHEQESENASGGKVLKNYSCHLCSKVFKMRGSLMVHMRVVHIGHNLGSLPKDGQIEVAHGEVGYNCPTCGKRFKKEQHVIQHLKTHEGKQWECDVCSKMFTTKYFLKKHKRLHSGEMPYKCKICDKSFTFQQSYHKHRLYHKDDKPHTCATCGRSFKELSTLHNHERIHTGEKPFACETCGKCFRQRVSYLVHRRIHTGVMPYKCTMCGKSFRYKVSQRTHKCPAQAAPVGAAQQSPDAIAQKNNDETTRLQANNTLQQSVGESMINTVDKEENKFVLIINAEGQHVLALQSEINNISTEKEGGKLEGADNTDKNSRSKTWSTDDLDSFKLKEPSETIEKTQSEKINMKNDFLSLMMSRLENSVSSSTFEMEHLRVSSPKQKENLIDSYTDFSQISDNAQMNIVDSRVEQNLTRDKDVSDSLQTINVESLKELLYSIDRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -