Basic Information

Insect: Dinoponera quadriceps
Gene Symbol: -
Assembly: GCA_001313825.1
Location: NW:154950-160357[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0092 0.54 10.1 0.8 2 23 285 306 284 306 0.96

2 10 0.00019 0.011 15.3 0.4 1 23 312 335 312 335 0.98

3 10 0.00023 0.014 15.1 0.2 1 23 341 363 341 363 0.97

4 10 0.00058 0.034 13.8 3.1 1 23 369 391 369 391 0.97

5 10 0.0001 0.0061 16.2 0.8 2 23 398 419 397 419 0.97

6 10 0.075 4.4 7.2 0.4 2 23 426 448 425 448 0.96

7 10 0.058 3.4 7.6 0.6 1 23 452 474 452 474 0.95

8 10 0.0086 0.51 10.2 4.2 1 23 479 501 479 501 0.98

9 10 2.8e-08 1.7e-06 27.4 0.8 1 23 507 529 507 529 0.98

10 10 0.0024 0.14 11.9 0.4 1 21 534 554 534 555 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0092	0.54	10.1	0.8	2	23	285	306	284	306	0.96
2	10	0.00019	0.011	15.3	0.4	1	23	312	335	312	335	0.98
3	10	0.00023	0.014	15.1	0.2	1	23	341	363	341	363	0.97
4	10	0.00058	0.034	13.8	3.1	1	23	369	391	369	391	0.97
5	10	0.0001	0.0061	16.2	0.8	2	23	398	419	397	419	0.97
6	10	0.075	4.4	7.2	0.4	2	23	426	448	425	448	0.96
7	10	0.058	3.4	7.6	0.6	1	23	452	474	452	474	0.95
8	10	0.0086	0.51	10.2	4.2	1	23	479	501	479	501	0.98
9	10	2.8e-08	1.7e-06	27.4	0.8	1	23	507	529	507	529	0.98
10	10	0.0024	0.14	11.9	0.4	1	21	534	554	534	555	0.90

Sequence Information

Coding Sequence: atGGAAGCAGTTACGAACCAAAGGAATGACGCCAGgatcgaggaggaggagaagaatgaagataaaaatgaagCCGAGATGGAAgctaataaagaaaataccGTGCCAATTGTAAAAAACTCCAAGAATTCGAAAAGAATCGGGAAAAATCGCTCCAGACAACGAAGGGTTAAGAAACGTGAAAAGGATACGCCACTCAAAGAACAAGTTGAAAATATCGTCACCACTGACGCACTCGATCAGAAAGAACAGTCGAGTGATGCATCGAACATAGCAGCTGTGTCGCCGATTTGCAAGTCACAAGTAATATCTGTGAAGCAGGAGAACATCCACAGCGAGGAGACGTCTTCGCAAAGTCGCAAGTCGGTGGGAACTGCGAGCAAGAGCGATGAATCCCTGGTGCGGATCCCAATTGAGAATTCCCAATCAAGTGATTCCAGCGCGTATCAAGAAACGGAAGTGGAAGCGCTCTGTGTCGTTATAACAGGTGATGAGGTGGAATCGAAAGTGAACGGCAAGTCCGATTCGATCTTGACACAAACGACCGATATCAACTCCAATGGTGTTTCTTTCATGAAAACCGACGGTGAAGCGGAGACTGCTGTCACATTGCCAAGTCAGGAAGATCCTCTCGTTTCGAAGAAATCGGATGAAGAAGCGCGGACGAGCGTGCAGAATAAAGCGTCTTGTGTAtcaaaaaaaaacagaagcGAGAGGAGGAGCAGTAATAAAATCTCGGAGTTGATGACTGAAGAACAAAAAAGACTGATTGAATCGAGCTATCGGATAAATTCAAGTCTCATGAAATGTGACCTGAAGAACAAAATGACTGTACTGGGCAAGGAGAAGATTAAGTGCAATATCTGCGAGATGAATTATTCCAGGCCAGACAAATGTAAAGTCCATATAATGGCCCATTTGGAGATTAAGCCCTACGAATGCGTAAAGTGTAATTACACAACGGTAACGGTAAGCAATATCCGCGCTCACATCCGGAAAAGTCACCTAAAACTCAAGCCGTACGTTTGCGATCAGTGCGACAAACGTTTTGGAAGCATGGTGCTCTTACAGGAACATGTTTATTCTCACACAGGTGAACGGCCGTTCAAATGCGAAATTTGTGGCCTCTCCTACACAAGTCGGCAGGGATTGAATTATCACTGCAAAACGCATAAGACGAACAAGGATATTAAATGTGACATCTGCCCCAAAATGTTTAAATCGCCGGCCAGAAAGAGGGCACACATGCATATTCACAACAAAGAGAACATGATACAATGTACAATATGTAAAAGTTATTTGTCGAATCAGACGAGCGTCGACATACATATGAAGAAAGTTCATTCGCAGAAATACGTTTGCGATATTTGCAATAAAGAGATGCTGTCTAAGAAAGATTTGTACAACCACAAGAACGTTCACATGAAAGCTAAGTACAAATGCACCATATGCTTCAAATATTACAAGAGCAGGCACATCTTGAATGAGCACATACTAAAACACGAGGGTATCCGGAAGTACAGATGTAATGATTGCGGGAAAACGTTCGCTCAACAATCGCATCTAGCCGCTCACTCAGCTACACATAGCAAAATTAGgtTTCCTTGCATTGGTTGCGAGAAACAATTCAATCGTCGCGACAATATGAAGGCGCACACCAAACGTTGCCAGTTGTTTCTGCAAAAGTCGGACACATTTGTGCTAGGGATTCACGACAAATTGTCCAATGTACGAACAGAACACAACGCGACAAGATAA
Protein Sequence: MEAVTNQRNDARIEEEEKNEDKNEAEMEANKENTVPIVKNSKNSKRIGKNRSRQRRVKKREKDTPLKEQVENIVTTDALDQKEQSSDASNIAAVSPICKSQVISVKQENIHSEETSSQSRKSVGTASKSDESLVRIPIENSQSSDSSAYQETEVEALCVVITGDEVESKVNGKSDSILTQTTDINSNGVSFMKTDGEAETAVTLPSQEDPLVSKKSDEEARTSVQNKASCVSKKNRSERRSSNKISELMTEEQKRLIESSYRINSSLMKCDLKNKMTVLGKEKIKCNICEMNYSRPDKCKVHIMAHLEIKPYECVKCNYTTVTVSNIRAHIRKSHLKLKPYVCDQCDKRFGSMVLLQEHVYSHTGERPFKCEICGLSYTSRQGLNYHCKTHKTNKDIKCDICPKMFKSPARKRAHMHIHNKENMIQCTICKSYLSNQTSVDIHMKKVHSQKYVCDICNKEMLSKKDLYNHKNVHMKAKYKCTICFKYYKSRHILNEHILKHEGIRKYRCNDCGKTFAQQSHLAAHSATHSKIRFPCIGCEKQFNRRDNMKAHTKRCQLFLQKSDTFVLGIHDKLSNVRTEHNATR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -