Dqua003661.1
Basic Information
- Insect
- Dinoponera quadriceps
- Gene Symbol
- -
- Assembly
- GCA_001313825.1
- Location
- NW:3209578-3216433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0024 0.14 11.9 0.3 3 23 446 468 445 468 0.96 2 10 0.011 0.64 9.8 1.9 1 23 474 498 474 498 0.98 3 10 0.00039 0.023 14.4 0.6 1 23 504 528 504 528 0.95 4 10 0.0012 0.07 12.9 0.4 3 23 536 558 535 558 0.92 5 10 3.6e-06 0.00021 20.8 3.1 1 23 565 587 565 587 0.99 6 10 0.0002 0.012 15.3 0.7 2 23 595 618 594 618 0.95 7 10 2.1e-05 0.0012 18.4 5.5 1 23 624 648 624 648 0.97 8 10 1.2e-05 0.00072 19.1 0.3 1 23 654 678 654 678 0.94 9 10 0.00045 0.027 14.2 2.2 1 23 684 706 684 706 0.98 10 10 0.22 13 5.7 0.2 1 23 773 798 773 798 0.95
Sequence Information
- Coding Sequence
- ATGTCTTGTAGAGAgcgaggtggaggaggaagaatcGTTTCTGTCTCTTCCACcgttgccgtcgtcgccgctgctgtcgcttcctcttcttcttgtaTGCCGAGGCGACGCGATACTCGAGAACGCATCATCAATTCTAGCGAAAACGAGAACCGCCCGTCACCATCCCGCTACACACTTCTTGTCTCTGAAAACAATCGTGAGAAAAAGGACGAACGGCGGACGGTAGTGGCTGGCAAGAGAGACAAGACCGCTGACAACTGTCGTACGAGAACTAGGACGACTGAAGTAACGGCGAGCGGCAGGAGTGACGACGTTGTCGAGACTACTTTAGTAGCCGAGAAGTTCTCAGTTGACTTTGAGAAATGGTTCAAGAGGGAACCTACGAGCATGGACCTGGACGGCAAGGTAACGGAGGACGTGGATCAATACCTAGGTGGGGAAGCATTGTCGCCGCACAGTTTCCTGGAGAAGGATCCTTACGGCCTGTCGATCGACATCGACCTGGCCaccgaagaaaagaaagagcaTCTGACCGATCCAATACTTCAGATGCCGAGCGAGAAGGTAGATGACGAATACATACTGTCAGATTTTCATCTGTACCATCTGGATACTTTGACGCTGTCGCCAGACGACATGATGGAGATACTGCCGTCCGATCAATCGACATTGTACGCCGCGGAGAGCCAGGATGACGTCTCGCGAAGCGGCGATGATTGCAAGAAATCCACTCGGATTGCCGTCAACGATCCGAAAGATAAAGAGGAAAGTAAGAAAGTAGAGGCGACGGAAGACGATACCAAGCAGGAAGCAGTGCAGTCCTCGGCGAAGAATCCTTCGGGACTCTTTATGGGAATCCTAGCGCCGATAGGGGAGAACTTGTCGAAAGTTGAGAGGCAAGAGGCCCCTCAAGTATCAGACGCCATAATGGAGCAATTGAAGGCAAGGGTGAAACTCGAGCCGCGTATCATCAAGAAGCGAGGGAAAATGTCGGAAAAGCGGCTCGGCAGAAGCTTCATCCGCGACGACGGTCAGGACGACGTGATGGCCGTGGTAGCTATATCGACCGACAAAACCTCCAACATGACGCAGATCGTCATCAATACCGGCAAGGAACGGCAGGTCTATCAGGGCAAAACGTCGGAGCTGATCGAAGCCACGGGGAATTTTCCGATGCTGCCAAAGATCGACGTTTGGAACGGTATATCGAGCGTCGACAATTCCGGTAATAGTCAGTACGAGATCGTGATATCCAAAGCCTTGGAGGAATTGGGCATCACTGACGACAGTCTGCAACCTGTATGCGTCACCGCGCACGACAAGGTCTGGCTCTGCCCGCAAGACGATTGCAACAGGCAGTTCGGCAGGCTTTACACTCTCAAGGGTCATTTATTGACCCACTACGGGGTCAGGCCGTTTAAGTGTGATCACGAGGGATGTGCCTGGGCGTTCTACTCCGAGTTCAAGCTGAAACGGCATAAGGAGACACATCTGAAGCGCAAGGATCACGTGTGCGAGGTGGAAGGGTGCAATCGCAGATTCACCACAGTCTACAACTTGTGGAGCCACGCGAAGCTGCACAGCCGTCCGAATCGAATTTTCTGTCAAGTTCCCGATTGCGAGGAGAAGTTTCAAACGAAAAGGGCGCTGGAGCTGCACATGAAGTCGCACGATCAGCGTCACGCGCCGTACGTGTGCCAACACTGCGGCAAACGGTATTACAGCAACAACGCGTTAACGTCTCATCAGCGTTCGCACAGCTACAAGGAAGTGGACGTCAAGTGCTCGTGGCCCGGCTGCGGCAAAGTATTCGACAAACCGTGTCGCTTGAAGGCCCACACGCGTTCTCACACCGGCTGTAAGCCTTATCATTGCACCTATCAGGATTGCAAGTGGTCCTTCTCGTCGTCCAGTAAGCTCAAACGACACCAGAAGAAGCACACGAATGAGCGTAAGTTTGCCTGCGAAGCGCCGGGCTGCGGGAAAGCTTTTATGCGCTCCGAACACCTGAAGGAACACCGGCTGACGCACACCGAAGGCCGTTACTTTCATTGTTTCGTGTGCGACGCGCGCTTCTCTGCCAAAAGTAGTCTCTATGTGCACATTAAGAAGCATCAGACCAAGATGTTGACGAAGATGGACGATTTATCGAACGCTGGCCGGAAAGGCGCGAGGACGAAAGCATCTCACTTCTCACGAGCAGCGAAGCCTATCCAGTCGGTATCCATGGAACCACTCCGATTGGAGGAGAGCGACGCAGCGTCCTGCGACGATTCAACGTACGCCTTCCACAAGGATCAACTGCGTACGGCGTATTACTGTCCGATCGAGACGTGCGCGTACTTGTACTCAAACGAGACGACGTTACGTCAGCATGCGCTCAAGGTGCACGGTGTGATTGTGCAGTGCGAGGAAGACTCGCTGCAAAAGGGTCCGTCGATCACGGATTATGTTCTCTGTAAATTATCGTCCTCGACATCGCCGTCACTCTCATcaccgccgctgccgtcgtcATCTGCTCTGTCAACGACGACCACCACTTGGTCCTTGAGTTCACCTATCGCCGCTGTGGTCACTGCGGACGAGAAAACGGTAATGACGAGCGACGAAGTGCGCGTTGTCAATCTGAGCGCTTCATCCTCGTTGCTACCGACGAAAAGAGCGGTGTGTTATTTATCAAAGCCAGCCTCTTTCGACAACGTCGTTCTACCGAAGATCAGTGTGCAACCGTTACGAACGGATGAAGCCGTACAAGAAGCTGCGAACAAGGATCATGGTTCAGCGCGCACCAGCCTTACGTTATCGGACGTGCTTCGACGAAAGATATATGATGCACAAACAGATGCAGTGGATCGCTCGGTCGTGACATCCTGTGTCACGACGTCCTCATCGTCCTCCTCAGTCGCGTTAGGTACGGGTGATCTGTGCGGGAATCTGTTGTTCATAGAGGAGTTGCCATCGGTATATTATCAAGACGACCCAGCTGGCGCAGAGTATCAGGTGTTGTTGCTCGATTCTAGTCCGCTCGAAAGTGCTGGTAACTTGCGCGGTTACGAATGA
- Protein Sequence
- MSCRERGGGGRIVSVSSTVAVVAAAVASSSSCMPRRRDTRERIINSSENENRPSPSRYTLLVSENNREKKDERRTVVAGKRDKTADNCRTRTRTTEVTASGRSDDVVETTLVAEKFSVDFEKWFKREPTSMDLDGKVTEDVDQYLGGEALSPHSFLEKDPYGLSIDIDLATEEKKEHLTDPILQMPSEKVDDEYILSDFHLYHLDTLTLSPDDMMEILPSDQSTLYAAESQDDVSRSGDDCKKSTRIAVNDPKDKEESKKVEATEDDTKQEAVQSSAKNPSGLFMGILAPIGENLSKVERQEAPQVSDAIMEQLKARVKLEPRIIKKRGKMSEKRLGRSFIRDDGQDDVMAVVAISTDKTSNMTQIVINTGKERQVYQGKTSELIEATGNFPMLPKIDVWNGISSVDNSGNSQYEIVISKALEELGITDDSLQPVCVTAHDKVWLCPQDDCNRQFGRLYTLKGHLLTHYGVRPFKCDHEGCAWAFYSEFKLKRHKETHLKRKDHVCEVEGCNRRFTTVYNLWSHAKLHSRPNRIFCQVPDCEEKFQTKRALELHMKSHDQRHAPYVCQHCGKRYYSNNALTSHQRSHSYKEVDVKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYHCTYQDCKWSFSSSSKLKRHQKKHTNERKFACEAPGCGKAFMRSEHLKEHRLTHTEGRYFHCFVCDARFSAKSSLYVHIKKHQTKMLTKMDDLSNAGRKGARTKASHFSRAAKPIQSVSMEPLRLEESDAASCDDSTYAFHKDQLRTAYYCPIETCAYLYSNETTLRQHALKVHGVIVQCEEDSLQKGPSITDYVLCKLSSSTSPSLSSPPLPSSSALSTTTTTWSLSSPIAAVVTADEKTVMTSDEVRVVNLSASSSLLPTKRAVCYLSKPASFDNVVLPKISVQPLRTDEAVQEAANKDHGSARTSLTLSDVLRRKIYDAQTDAVDRSVVTSCVTTSSSSSSVALGTGDLCGNLLFIEELPSVYYQDDPAGAEYQVLLLDSSPLESAGNLRGYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -