Basic Information

Insect: Dinoponera quadriceps
Gene Symbol: -
Assembly: GCA_001313825.1
Location: NW:1102705-1105469[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-05 0.00074 19.1 0.3 1 23 93 116 93 116 0.98

2 8 4.7e-05 0.0028 17.3 1.9 1 23 133 155 133 155 0.98

3 8 2.2e-05 0.0013 18.3 2.0 1 23 180 202 180 202 0.98

4 8 0.0031 0.18 11.6 3.2 1 23 210 232 210 232 0.98

5 8 2.1e-05 0.0013 18.4 0.5 1 23 283 305 283 305 0.97

6 8 2.3e-06 0.00013 21.4 1.1 2 23 311 332 310 332 0.97

7 8 2.1e-07 1.2e-05 24.7 0.7 1 23 338 360 338 360 0.95

8 8 0.00016 0.0094 15.6 1.5 1 23 366 388 366 388 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-05	0.00074	19.1	0.3	1	23	93	116	93	116	0.98
2	8	4.7e-05	0.0028	17.3	1.9	1	23	133	155	133	155	0.98
3	8	2.2e-05	0.0013	18.3	2.0	1	23	180	202	180	202	0.98
4	8	0.0031	0.18	11.6	3.2	1	23	210	232	210	232	0.98
5	8	2.1e-05	0.0013	18.4	0.5	1	23	283	305	283	305	0.97
6	8	2.3e-06	0.00013	21.4	1.1	2	23	311	332	310	332	0.97
7	8	2.1e-07	1.2e-05	24.7	0.7	1	23	338	360	338	360	0.95
8	8	0.00016	0.0094	15.6	1.5	1	23	366	388	366	388	0.98

Sequence Information

Coding Sequence: ATGTTCTTGGGTTTTGTCGATTTCAGGGAAGCAGGCGAGACCTTCGGCGGATTGTCGGGGATGCTGCGCCAGATCCTCTCGCCCTCGCCCGAGACCGGGGAGCCCGGTGTCGGCATGTCCTCCGTCAATTGTAATCTTCTACAGACCAACTCCATATACACGAACCAATCGTCGATGCTATCGTCGACATTACTCAACACCATCCCCCCGCACTTTCAGTCCATATGCCCGGAGCAGTCACTACTGCTCGACCAGATACAAATTCTCGCGGAGTCCTACCCGTGTCCCACCTGCGGCCTGGAGTTCCGCAGCGTCCTTAAGCTAAACTATCACATGCGTACGAGCCATCCGGTGCGTCTGGAGTACGAACAACACAACATCGAGAACCAGCCGCGATACTCGTGCGCCGTTTGCTCGCGTAGCTTCGTCTCTCTGAGCCATTTCAAGCTGCACGAGCTCACGCACAGCGCCGCGTCCGTGACCTCGTGCTCtagtggtggtggtggtggtggtggtggtggtaacATGGACAAATTGTTCTCCTGCGATCTCTGCCGGGCGACCTTCCGCTATCGCACGCTGCTGGAGCGCCACCGGCGGATGCACGACGTCGATCCGGAAAAACTCTACTCCTGCCCCAGGTGCCTGATGCGCTTCGAGACGCGCAATCTGTACAATCACCACGCGAAAACCCACCGGCCGATCACGACGATCGTCGGCACCGACAACAATCGGATGGTGGTCGGCGGCCCGAACACGTTGGTGCCGCCGTCCGTCGTCGATCCGGTTGTCACCACCGCCAACCTCGGCGGCGGCCCCATCATGCCCGCCAAGTCCATGACCTCTTATCCCTGCGATTCGTGCTCCAAGCAGTTCACCACCGCTGAGTCATTGACTACGCATAAGTTGGTGCACAGACCCAGACCGCTGGTGTGCAACGTCTGCGGCAAGGGCTTCACTCATCGCAAGTATTACGTGGTGCATCAGCGCATCCACACCGGCGAGAGGCCATACCTCTGTGCCATGTGCGGCAAGTCGTTCACCCAGGCGTCGACGCTCACCGTGCACCGCCGGTACCATACGGGCGAGCGTCCGTACACGTGTACGTTTTGCGGGAAGGGATTCGTCACGCGAACGATCATGCTTAATCACATGAAGAAGCATTGA
Protein Sequence: MFLGFVDFREAGETFGGLSGMLRQILSPSPETGEPGVGMSSVNCNLLQTNSIYTNQSSMLSSTLLNTIPPHFQSICPEQSLLLDQIQILAESYPCPTCGLEFRSVLKLNYHMRTSHPVRLEYEQHNIENQPRYSCAVCSRSFVSLSHFKLHELTHSAASVTSCSSGGGGGGGGGNMDKLFSCDLCRATFRYRTLLERHRRMHDVDPEKLYSCPRCLMRFETRNLYNHHAKTHRPITTIVGTDNNRMVVGGPNTLVPPSVVDPVVTTANLGGGPIMPAKSMTSYPCDSCSKQFTTAESLTTHKLVHRPRPLVCNVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTFCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01099420;
90% Identity: -
80% Identity: -