Basic Information

Insect: Dinoponera quadriceps
Gene Symbol: -
Assembly: GCA_001313825.1
Location: NW:142318-146734[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 0.72 9.7 3.0 1 23 381 403 381 403 0.97

2 9 8.8e-05 0.0052 16.4 3.4 1 20 409 428 409 431 0.95

3 9 1.7e-05 0.001 18.6 0.9 1 23 437 459 437 459 0.99

4 9 7.6e-05 0.0045 16.6 4.2 1 23 465 487 465 487 0.97

5 9 1.8e-07 1.1e-05 24.8 0.9 1 23 498 520 498 520 0.98

6 9 4.3e-08 2.6e-06 26.8 1.8 1 23 526 548 526 548 0.97

7 9 1.1e-05 0.00066 19.2 2.4 1 23 554 576 554 576 0.97

8 9 4.3e-05 0.0025 17.4 0.2 1 20 582 601 582 604 0.93

9 9 4.5e-06 0.00027 20.5 0.4 1 23 610 632 610 632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	0.72	9.7	3.0	1	23	381	403	381	403	0.97
2	9	8.8e-05	0.0052	16.4	3.4	1	20	409	428	409	431	0.95
3	9	1.7e-05	0.001	18.6	0.9	1	23	437	459	437	459	0.99
4	9	7.6e-05	0.0045	16.6	4.2	1	23	465	487	465	487	0.97
5	9	1.8e-07	1.1e-05	24.8	0.9	1	23	498	520	498	520	0.98
6	9	4.3e-08	2.6e-06	26.8	1.8	1	23	526	548	526	548	0.97
7	9	1.1e-05	0.00066	19.2	2.4	1	23	554	576	554	576	0.97
8	9	4.3e-05	0.0025	17.4	0.2	1	20	582	601	582	604	0.93
9	9	4.5e-06	0.00027	20.5	0.4	1	23	610	632	610	632	0.98

Sequence Information

Coding Sequence: ATGAGCGTGgaaatttgttacacggacATGTGCCGCGCCTGTATGAAAACCAACGGCACCATGCTGTCGATGTACGGCGATAATAAAATCAAAGGCATGAATCTGCCGGGCAAGCTCGTAGAACTCACGTCTGTCGAAATTAACCAATTCGATGGACTTCCCGACAAACTCTGCTGCAAATGTGCTTATCGTATTCATGTTTTTTATGACTTTAAGCAGCAAGTACAAGAAACAAACAAGAAATTGTTAAAGATGTTTGGGAAACAGGAGCGCATGTTAAAgaaagaaCCATTAGATGAGAAAAACATCATAGACATTTCTATGCCAATAAACGAATCCTTTGAATTCATATTGCCAAGCGATCCGAGTGATATCTCACAGAATTTAATGCCTGAGATAATAGAAGAGACAACTGAGGACAAGCAAGAAGTTATGATAGATGTATCTCAGTTATTCGGAAACCACAATGATGAAAAGGATAGTAACCTCAGTTGGGCTGATGTTCTTTCCAATCTACGAGAAACCAGCGAGGAACAAACGGACGTAGGTTCTGTAAAAACTGAAGCACCAGAGGAGATACCAGAGGAAATACCAGAGGAAATTACGAAGATCTTGGACTCGCAGCAGTACACTATAATGTATGTACCGAAATCTATAATCGATTCCACCACGGAAATTTCGATATCTGACTCGGATCAAGAAAAAGCCGAGAACGACCACAACATACTTGTAGATGCCATGAAAATATTGGataaagaagaggaagataTCGAAGAGTTCTCGCACGACATATGTGCTTCTAGTCCGGTGGAGTCGAAAGCAGTTACGGAGAAGAAACGTACAACTTGCACAACAGATCAGGACGATGACTCGATGGAAAATAAGGAAACGAGCGAAGAGAGCAATTCGAAAATTGAACAGCTTGCACTGCAAACGGACAACGATGAGTCTGATTCCGATTACTTCATCGATCCTAAGGACAACATATTAGGTAGCCTGAACGACATGATAACGCGGATAAAAGAGCTGAGGCAGGGAAACGAGACTATATATCAGTGTACATTGTGTTTGCAAAATTACGATCAACTGATAGGCGGGTTGTTACACATCATCGACAACCACGTTCCTAGCAGTGGGCCTTTTTTCTGTGTGGTATGCGAGAAGGACTGCGACAGCCACCGAGAATTACGTGCGCACGCGAAAACGCACACCGGCCGTTTGCCATATTCGTGCTTCATCTGTAATAAGGCATACGCTACGAAACGTTACTTGAAGCGGCACATGGCGTGTCACGCCGATTTTCCGCGCTACCGTTGCTCGAAGTGCAGCATCCGTTTTACGGCCAAGGCGGACCTCGAGACTCATATGACAACGCATGTGTGTGGCGCACCTTTCGCCTGCAGCCAGTGTTCGCGCAAATTTAATCACAAGGGTAATTACAAGCGACACTTGATCAGTCACTTGGATCCGCAGGGCCTTTATCTGCCTAAGTATCCGTGCGAAACCTGTAACAAACGATTCCCCAACAAACGCACACTAGAAACTCACATGCGTGTCCATACCGGTGAAAAGCCGTTCTGTTGCGAAATCTGTGGAAAATCGTTTTCACAGCAAGGTAACCTGCTGAATCACACAAGGATACATTCCAATCCGCGTAGCTACACATGCGATGTTTGCAATAAAAGTTTTAACCAGCATGCCACGTTAAAGGATCATCGGCTACTGCACACAGGCGAAAAACCTCATGTGTGTAATGTATGTGGAGTTGCGTTTACGTTTAGCGCTGCATTGAGGAGGCACATGTGGTCTCACACGAACAAAAAGCCGTTTAGATGCGAAATATGCCAAGCACAATTCGTTGGCAAATACGATTTACGACGACACATGCAGGTGCATACCGATCGGCCCaaaatgaaacgaaagaaaaacgcTACATCGAAATCGAACAACCTTCTCCGAGAAGAATTCAAGGAAGAAGATTCCATCACAATGGAGCCgaatattgaaacaatactCGTTGAAGAAGTACTTTTGGCAGATGACGTCACGGAAGTTGCGCATCAAGCTGaatcagagaaagagaacttCGATGCATTATTCAATTTTACATAG
Protein Sequence: MSVEICYTDMCRACMKTNGTMLSMYGDNKIKGMNLPGKLVELTSVEINQFDGLPDKLCCKCAYRIHVFYDFKQQVQETNKKLLKMFGKQERMLKKEPLDEKNIIDISMPINESFEFILPSDPSDISQNLMPEIIEETTEDKQEVMIDVSQLFGNHNDEKDSNLSWADVLSNLRETSEEQTDVGSVKTEAPEEIPEEIPEEITKILDSQQYTIMYVPKSIIDSTTEISISDSDQEKAENDHNILVDAMKILDKEEEDIEEFSHDICASSPVESKAVTEKKRTTCTTDQDDDSMENKETSEESNSKIEQLALQTDNDESDSDYFIDPKDNILGSLNDMITRIKELRQGNETIYQCTLCLQNYDQLIGGLLHIIDNHVPSSGPFFCVVCEKDCDSHRELRAHAKTHTGRLPYSCFICNKAYATKRYLKRHMACHADFPRYRCSKCSIRFTAKADLETHMTTHVCGAPFACSQCSRKFNHKGNYKRHLISHLDPQGLYLPKYPCETCNKRFPNKRTLETHMRVHTGEKPFCCEICGKSFSQQGNLLNHTRIHSNPRSYTCDVCNKSFNQHATLKDHRLLHTGEKPHVCNVCGVAFTFSAALRRHMWSHTNKKPFRCEICQAQFVGKYDLRRHMQVHTDRPKMKRKKNATSKSNNLLREEFKEEDSITMEPNIETILVEEVLLADDVTEVAHQAESEKENFDALFNFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -