Dqua004901.1
Basic Information
- Insect
- Dinoponera quadriceps
- Gene Symbol
- -
- Assembly
- GCA_001313825.1
- Location
- NW:636574-662942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.2 1.9e+02 2.1 0.0 2 17 65 80 64 81 0.87 2 20 0.13 7.8 6.4 4.4 2 23 282 304 281 304 0.97 3 20 0.0061 0.36 10.6 3.0 1 23 354 376 354 376 0.98 4 20 0.14 8.2 6.4 1.1 1 23 425 447 425 447 0.98 5 20 0.0016 0.093 12.5 0.2 1 20 497 516 497 518 0.95 6 20 0.001 0.06 13.1 2.2 1 23 558 580 558 580 0.98 7 20 5.2e-05 0.0031 17.1 0.6 1 23 622 644 622 644 0.98 8 20 0.00014 0.0083 15.8 0.0 1 23 650 672 650 672 0.98 9 20 0.00011 0.0065 16.1 0.4 1 23 716 739 716 739 0.94 10 20 0.0005 0.029 14.0 1.3 1 23 745 768 745 768 0.95 11 20 3.3e-05 0.002 17.7 3.4 1 23 775 798 775 798 0.97 12 20 0.0011 0.063 13.0 0.0 3 23 808 828 806 828 0.92 13 20 0.057 3.4 7.6 0.3 1 20 883 902 883 902 0.97 14 20 0.011 0.67 9.8 0.0 2 23 922 943 921 943 0.96 15 20 2e-05 0.0012 18.5 1.8 1 23 956 978 956 978 0.98 16 20 0.00099 0.059 13.1 2.0 1 23 999 1022 999 1022 0.93 17 20 0.0091 0.54 10.1 1.5 1 23 1082 1105 1082 1105 0.93 18 20 0.01 0.61 9.9 0.3 1 23 1127 1150 1127 1150 0.90 19 20 0.0049 0.29 10.9 0.7 1 23 1189 1212 1189 1212 0.93 20 20 0.075 4.4 7.2 0.3 2 23 1241 1263 1241 1263 0.93
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGATCGAGAACGTGGAGAACGTCTGCAGGCTGTGCCTGTGCACGGACGAGCCGAGGGCTTCGGTGTTCGGGACGGACAAGCAGGAGGAGGATTCCACCGCCGTGCCGTTGGCCATAAAGATCCAAGCCTGTCTGTCAATCGAGATTTCGCCCACTGATAAGTTGTCCACGCTAATATGCGAGGAATGTGTGAAAAGTGTAAACCAATGGCACACCTACAGGGAATCCTGTCTACGTTCGCAGAATAAGCTGCAGAAGTGGCTGACCAGTCATTCGAAACCTGAGGTTGTAACAATCAAGGGTGAACCGGTGGACTTGGATTACGAAGACCACGTTGAAATTATCTCAGAGGTGAACAAAAAGCAAAAATCATTGAACATACCGATTCATACagtggaggaggaggggagcgAGACCAGCGACGAGCAGATACAAAATGTATCGGATCACGttgacgaggacgaggacggtGCGAATAATACGGAGCAGCAAATAGAACCTGAGACAGTTCCGTTAATGGCGGAGAAAGAGACCGATAAAGACGAGAGCCAACGAACGGAGGAGCAGCAGCAGGATCCTCTGTCGCGTCCCATCAAAAGCGAGCCGCTGGACGATTACGATACCGACTGCACCGTAGAGTTAGAATCCGCCGAAGACAACGAGCTGCTGTTGAATCCCATGGCGCTCGGAGGCACGAAGGAAGACGTGGTGATGGAGGCCGATTCCACCCAAAAGTCCACCGGCGGTGCCGGCGGCGCGACGCACAAGAAAAAGCTAAGACGCGGCCCGCACACGCATTTCAGAGGGCCGCGCGCTTTCAAGCAGAAGTGCGTATACTGTCAGATATTTTTGCATTCCAAGTATTCGTACATGAAGCACATGAAGCGATTTCACAGTAATAAGAACAACGGCACCGAGAACTCGGAGTCCCAGAATGAGGAGGAAGAGATGGTGGAGGATCTCGAGGAGGAGCTGATCAGCATGGAGAAGGAGTCGCCGTTGACGCAAGTCCAGCAGGACATTATCAGCCAGTTGAAAACGTTCTCTTGTTACAAGTGCCAACAGAGCTTCAACGACCGGCGCAGCACGCTCTCTCACATCCGCCAGCACCTGCCGGACCTGAGACCGCACACGTGCATCGCCTGCCTGACGCAGTTCTCCGACCGGTCGATGTACCAGGCGCACTGCAGCGCGTCCTTCGAGTGCGCGATGAAGATCGCGCTGGTCGAGCCGAAGCAGGGTAACGAACGGTACTTCACGTGCAACATGTGCCTGCGCTCGTTGCAAGGTAGGAAGGAGCTGCTCAGCCACCTGACCAAGCATTCTAACAAGCAGTACGAGGAGATGATCTCACCGGCGCGGCCGCCCCCCAAGCTGAAGCCGATGGCGCCGTTGCCCTCGCCGAAGGACGAGGCCAGCAAGTCGTCGCCGAAGAGCGGCCCGTACAAGGACGGGGATCCCGCGCACAATCACAAGTGCGACCTGTGCGGCATGATATACCGTTACCGGCCGAACCTGATCAAGCACAAGGCGCTCTGCACGCGGCTGCAGCCGGAGGTACGGACGTCGTACAAGTGCGCCCACTGCTCCATGACGTTCCTCGTGTTCAAGAAGTTCCACTCGCACGTGACGGTGAACCACAAGAAGAAGGAGTTCACCTGCGCCATCTGCAACTCCCGATTCCGTTCGCCCAGCGACTTCCTGAGCCACCACGAGAGGCACCGGGTGTCGGCTATCCGGCAGACGCAGCACAACAGCGACAAGGGCCCGCAGAACGCCCTGTTGAAGGAGCGCAACGGCGGGGCGGACGCGAAGCAGAGCAAGACGAGGGCCGGCGGTCAGAAGTACACCTGCGCCCTCTGCAACAAGGCGTTCTCGACGCGGCTCGAGCTGACCGAGCACCGGAACCTGCACCTCAAGGTAAAGATCTACTCGTGCGCGATTTGCCGCAGCATGTTCAGCAGCGCCGGCGCACTGGAGATCCACATGAGGGAGCACGGCATAGACGACCCGAACGAGCGGAACGCCAACATCTCCTGCGTGGAGTACGGCAGCCTGGACGAGGACGTGAGGATCGAGAACGACTCGATGAACTCGAGCGCGGTCTCGAGCGACGCGCAGGGCGGCTACGAGTGCGAGCAGTGCAACAGGGTGCTGTCCAGCCACGCGAACCTCCGACGGCACGCGACGATCGCCCACCGGAACTCCAAGAAGTACGAGTGCACCGACTGCGCGAGGATCTTCACGCGCAAGGAGATGTACGAGCAGCACGTGCAGCACGAGCACAAGTCCTCCAAGAGCTTGTTCCACTGTCCCGAGTGCCCCAAGAGCTTTGTCTTCCAGACGAACTTCCGCTATCACTTCCGAACCGCGCACCTGGAGAAGTCGCGGGACGGCTACGGCTGCGACATCTGCGGCAAGGTCTTCGCCGAGGAGGCGTCCTTGAAGATACACAAGGGCTGGCACAATCGCGCCAACTCTCGTTTCAACACCATGCTCATCCTGGGCAAGCAGAAGAACGACTCGCAGAAGAGCGCCGCAGAGTCGAACAGCCCGGAACGCCCGGCGAGGGCGCGGAAGTCTTTCCCCAATCCTCCGTCGCAGTCGCCGACCAAGTCGCCGGGTAGCTTCCAGTGTCAAGTGTGCAACGACAAATTCAACGACGTGACCGAGTTGAGGACTCACCTGTGGGACGTGCATTGCGCACGGAACAAGCCGGAAAAGAGCATATCCAACGACGAGCTGCAGTGCGAGCTGTGCACCAACGTCTTCCCCGACAAGGACATCCTGGCCGCCCACATGAAGTGGCACAAGGCCAACCCCATTCTCAACGACGTCCACAAGACTTACACCTGCGACGTCTGCAACAAATCCTACAGCTCGAAGAAGGTCCTGTGGAAGCACAAGAGGCTGCACAAGGCCACCCTCGTCACGTCCGCCAAGTTCCAGTCGTTGGCCAAGAAGCCGGTCAACCCGTTCTTCTGCACGATCTGCCGAAAGCCCTTCTCCAGCGGTCAGTCCCTGCAGCGGCACAAGCTCAACTTCCACAGCGACCTGCAGAGCCAGCAGTCGCGGGCGCAATCCTTGCACAACAGCACCCGTAGGTTATCCCTCGAGGAGGAGCCGAAGTTCAAGCGTATGAAGGTCGAGGTGGACGACAGTCCGCCGCCGCCCAAGTTGCCGCCCTTCGCCATGGACTTCGCCGGCGAGGTGAAGAAGAAGTCGTTCATGTGCCACCTGTGCAGGAAGATCTTCCCCAACATGAGCGTGCTCTACAAGCACAAGCAGGCTGTGCACAAACCCCACGTGAGGAAGAACGGCTTGCCCGAGTGCAGACCGGTGACGACGGAGGACGGCAAGTTCTTGTGCAACGTCTGCTCCAAGGAGTTCCCAGGCCTGCCGAATCTCCGCCAGCACTTCACGATCAAGCACAAGAAGATCTACGACTCCGACAAGTACCAGTGCAACGTGTCCAGCTGCGACCAGCAGGCGCCGTCCGAACCGGCCAAGGAGCCCTACGAGCCGACGCACACCAACAACATGATGTTCAGTTGCAAACTCTGCGACCGTTACTTCTTCAACAAGGAGACCATGATCGACCACATCGTCAACGTGCACAATACCGCGTACCAGCCGGACAACAAGACCTTCCACTGGGAAATCGACCTCACCACCTACGTGGTGAAGGGCGCGACCGGGGCCACGTGTCCGCGTTGCAACGTCAAGTACCCCAACAATCGGGCCATGAAGATACACTACGTCAAGATCCACGAGAACGAGTAA
- Protein Sequence
- MDEDVVEIENVENVCRLCLCTDEPRASVFGTDKQEEDSTAVPLAIKIQACLSIEISPTDKLSTLICEECVKSVNQWHTYRESCLRSQNKLQKWLTSHSKPEVVTIKGEPVDLDYEDHVEIISEVNKKQKSLNIPIHTVEEEGSETSDEQIQNVSDHVDEDEDGANNTEQQIEPETVPLMAEKETDKDESQRTEEQQQDPLSRPIKSEPLDDYDTDCTVELESAEDNELLLNPMALGGTKEDVVMEADSTQKSTGGAGGATHKKKLRRGPHTHFRGPRAFKQKCVYCQIFLHSKYSYMKHMKRFHSNKNNGTENSESQNEEEEMVEDLEEELISMEKESPLTQVQQDIISQLKTFSCYKCQQSFNDRRSTLSHIRQHLPDLRPHTCIACLTQFSDRSMYQAHCSASFECAMKIALVEPKQGNERYFTCNMCLRSLQGRKELLSHLTKHSNKQYEEMISPARPPPKLKPMAPLPSPKDEASKSSPKSGPYKDGDPAHNHKCDLCGMIYRYRPNLIKHKALCTRLQPEVRTSYKCAHCSMTFLVFKKFHSHVTVNHKKKEFTCAICNSRFRSPSDFLSHHERHRVSAIRQTQHNSDKGPQNALLKERNGGADAKQSKTRAGGQKYTCALCNKAFSTRLELTEHRNLHLKVKIYSCAICRSMFSSAGALEIHMREHGIDDPNERNANISCVEYGSLDEDVRIENDSMNSSAVSSDAQGGYECEQCNRVLSSHANLRRHATIAHRNSKKYECTDCARIFTRKEMYEQHVQHEHKSSKSLFHCPECPKSFVFQTNFRYHFRTAHLEKSRDGYGCDICGKVFAEEASLKIHKGWHNRANSRFNTMLILGKQKNDSQKSAAESNSPERPARARKSFPNPPSQSPTKSPGSFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKSISNDELQCELCTNVFPDKDILAAHMKWHKANPILNDVHKTYTCDVCNKSYSSKKVLWKHKRLHKATLVTSAKFQSLAKKPVNPFFCTICRKPFSSGQSLQRHKLNFHSDLQSQQSRAQSLHNSTRRLSLEEEPKFKRMKVEVDDSPPPPKLPPFAMDFAGEVKKKSFMCHLCRKIFPNMSVLYKHKQAVHKPHVRKNGLPECRPVTTEDGKFLCNVCSKEFPGLPNLRQHFTIKHKKIYDSDKYQCNVSSCDQQAPSEPAKEPYEPTHTNNMMFSCKLCDRYFFNKETMIDHIVNVHNTAYQPDNKTFHWEIDLTTYVVKGATGATCPRCNVKYPNNRAMKIHYVKIHENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -