Basic Information

Insect: Dinoponera quadriceps
Gene Symbol: -
Assembly: GCA_001313825.1
Location: NW:148591-153651[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.2e-05 0.0036 16.9 1.3 1 23 288 310 288 310 0.97

2 12 2e-05 0.0012 18.4 1.7 1 23 314 336 314 336 0.99

3 12 0.0016 0.094 12.5 5.6 1 23 341 363 341 363 0.96

4 12 0.00019 0.011 15.3 2.3 1 23 411 433 411 433 0.98

5 12 0.00059 0.035 13.8 1.4 1 23 438 460 438 460 0.97

6 12 7.4e-05 0.0044 16.7 2.2 1 23 506 528 506 528 0.98

7 12 9.7e-05 0.0057 16.3 1.0 2 23 536 557 535 557 0.97

8 12 7.3e-07 4.3e-05 23.0 2.1 1 23 567 589 567 589 0.96

9 12 0.00017 0.0098 15.5 1.6 1 23 595 617 595 617 0.97

10 12 0.00012 0.007 16.0 0.7 1 23 623 645 623 645 0.98

11 12 3.5e-06 0.00021 20.8 2.0 1 23 651 673 651 673 0.96

12 12 6.3e-05 0.0037 16.9 0.3 1 22 679 700 679 700 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.2e-05	0.0036	16.9	1.3	1	23	288	310	288	310	0.97
2	12	2e-05	0.0012	18.4	1.7	1	23	314	336	314	336	0.99
3	12	0.0016	0.094	12.5	5.6	1	23	341	363	341	363	0.96
4	12	0.00019	0.011	15.3	2.3	1	23	411	433	411	433	0.98
5	12	0.00059	0.035	13.8	1.4	1	23	438	460	438	460	0.97
6	12	7.4e-05	0.0044	16.7	2.2	1	23	506	528	506	528	0.98
7	12	9.7e-05	0.0057	16.3	1.0	2	23	536	557	535	557	0.97
8	12	7.3e-07	4.3e-05	23.0	2.1	1	23	567	589	567	589	0.96
9	12	0.00017	0.0098	15.5	1.6	1	23	595	617	595	617	0.97
10	12	0.00012	0.007	16.0	0.7	1	23	623	645	623	645	0.98
11	12	3.5e-06	0.00021	20.8	2.0	1	23	651	673	651	673	0.96
12	12	6.3e-05	0.0037	16.9	0.3	1	22	679	700	679	700	0.96

Sequence Information

Coding Sequence: ATGACTTCGAGTTACTTCGCTTTGCCGCTCAACATGGACAGAGTGTGCAGAATTTGCCTAATCGAGAGCACCAATCTGTCGGCGATCTTCTCCAGTGATCAAGAGGCGAATGATTTCCCAGGACTCTCGCAGAAGATACAAATCTGTGGTTCCATTGAGATACACGAACAGGATGGACTGCCTTCGCTGATATGCGATGTTTGTGCGTACAAGGCTAGAGTGGCACACGAGTTCAGACAGCAGTGTCAGCATTCGGACGCAAGGTTGCGCATGTACTACAACAAGCCTGCCAAGTGTCATATTACGGATTCTTGTACACAGACAGATTTCCAAGCAAGGTTTATACTGGCGACCAAACCGAATCATCTTCAAGATGAGTATTTTGTTAAAGAGGACATGCAAGTGGTGGCGCAGGAATATGCGCAGCCTGCTGAGTCATTCGTCAGAGATGAGAGCAGTCTGAGCACGAATCAGATTCATATTCAAGACGACAAGCTGTTCATATGTTCCATCGGGTTCGAAGGTAgcaaagaagaagaggaggaggaggaggaagaggaggaggaggaggtggtgacGACGAAGGACTCCTGCATAACGGAAAACGTGGTTCACGAGATGTCGATAGCGGAGACATCCGATATGCCGAGCAAAAACGACGAGAAGGAAGCCGAGCGGTACGTCGAGAAAAGCGGCGAAACTTTCGGAAATttggaggaagaggaggaggaagccgAGGAGAACTTCCCGCAGAAACGTACGTCCACGAGGAAAGCTAAGGCGAAGGCGTACAGCGACGACGAGGCCGGGCAAAATTATTACGAGCCGAGCAGCGACAGTCAGGATTCGGTGGAGTCCAAGTTCAAGTGCAACGTCTGCTCGAAGCAGTACGCTACGCAGAAGGGCCTGAAGAAGCACTCGCTCGTCCACGAGAAGAAATACAAGTGCAACGTCTGCCTGAAGATGTTTTACAAGCAGGAGAACATGGAGAACCACCAGAAGATACACGCGTCGAAGCCGCACGCGTGCCAGCTGTGCCACGCGTGCTTCTCCAAGCCGCAGAGTCTCGTGAAGCACCTCAAGTCCCACACGGAGAAGGTGAACGACATGATCAAACAGATCAGCACGGACGAGCGCAAGGAGCCGAAGAAAGAGCTGAAGAGCGAGGACGACACGGAGGACGacgagacggcggcggcgaacgaCGAGTTCGAGAACGCGCCCGAGCTGTACAAATGCGAGATCTGCAGCCAGTACTGCTCGTCCTTGAAGAACTTGAGGAGGCACGCTCTCGTACACGGCGACAAGAAGTATTCGTGCACCGTCTGCAAGAAGTGGTTCTTCAGGCCGGACACCCTGAAGAAGCACGCGGAGAAGCACGGGCACGGGCTGCTGGACAACCTCGCGGACGACAACAAGCTGTACGACTCGGATGCGAGCAGCAACGCTGCGAGCAACAACGCCGCGAGCAACGCCAGCGTGAAGAAGGAGGACAGCGACGAGGACGGGGGGGAGTACAAGTGCCAGCACTGCGACAAGGTAATGGCGACGAAGAAGGGCCTGAGGCGGCACGTGTCGATGCACAAGCCGAAGGCCGAGCCGGTGACCTGCGAGATCTGCAAGAAAGTGTGCGCGAGCCAAGCGCGGCTGGTCCTCCACCAGCGCACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAATACCTCTGCCACATCTGCAGCAAGGTCTACCCCAGCAACTCCTCCCTCACCTACCACATGCGCACCCACACCGGCGTGAAGCCGCACGTCTGCAAGACCTGCAACAGCGGcttcaccaccaccaccagccTGGCGAATCACATACGCATCCACACGGGCGACAAGCCGTTCGTCTGTCACGTATGCAGCGCCGCGTTCGCCGTCAGCTCGGCCTTCCGTCGTCACCTGACCCGGCACACAGGCGAGGCGAATTACCTCTGCAAGACCTGTGGCAAGGCGTTCAAGCGGCTGAGCACCCTCAAGGagcacacgtacacgcactCCGGCGAGAAGCCGTACGTCTGTAAGACGTGCGGCGCCGCTTACAGTCACAGCGGCAGCCTCTTCGCCCACCAAAAGCGCTGCCGCGCTCAATACGGCGATATCATCGTCGAggatcatcatcatcaccacaTGCCGGTCACGCATATCCATGTCAATATGAACAACGTGAACAACGGCCCGCGGCCGGTTGCTGTGATAGGTCAGATATATTGA
Protein Sequence: MTSSYFALPLNMDRVCRICLIESTNLSAIFSSDQEANDFPGLSQKIQICGSIEIHEQDGLPSLICDVCAYKARVAHEFRQQCQHSDARLRMYYNKPAKCHITDSCTQTDFQARFILATKPNHLQDEYFVKEDMQVVAQEYAQPAESFVRDESSLSTNQIHIQDDKLFICSIGFEGSKEEEEEEEEEEEEEVVTTKDSCITENVVHEMSIAETSDMPSKNDEKEAERYVEKSGETFGNLEEEEEEAEENFPQKRTSTRKAKAKAYSDDEAGQNYYEPSSDSQDSVESKFKCNVCSKQYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMENHQKIHASKPHACQLCHACFSKPQSLVKHLKSHTEKVNDMIKQISTDERKEPKKELKSEDDTEDDETAAANDEFENAPELYKCEICSQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDASSNAASNNAASNASVKKEDSDEDGGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGDIIVEDHHHHHMPVTHIHVNMNNVNNGPRPVAVIGQIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -