Dqua005122.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dinoponera quadriceps
Gene Symbol
-
Assembly
GCA_001313825.1
Location
NW:1759410-1769884[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.41 24 4.9 2.6 2 19 417 434 416 437 0.92
2 15 0.0012 0.071 12.8 2.2 2 23 450 472 449 472 0.95
3 15 0.00062 0.036 13.8 0.3 2 23 479 500 478 500 0.96
4 15 1.8e-05 0.001 18.6 2.8 1 23 506 528 506 528 0.96
5 15 0.00026 0.015 14.9 5.4 1 23 537 559 537 559 0.96
6 15 3.7e-06 0.00022 20.7 1.5 1 23 565 587 565 587 0.98
7 15 1.5e-05 0.00091 18.8 1.0 1 23 592 614 592 614 0.98
8 15 0.039 2.3 8.1 6.2 1 23 621 643 621 643 0.98
9 15 4.6e-05 0.0027 17.3 1.2 2 23 663 684 662 684 0.97
10 15 0.0013 0.078 12.7 0.6 2 23 692 714 691 714 0.96
11 15 0.00011 0.0066 16.1 1.6 1 23 720 742 720 742 0.97
12 15 0.00031 0.019 14.7 3.7 1 23 748 770 748 770 0.99
13 15 1.7e-07 1e-05 24.9 2.0 1 23 776 798 776 798 0.99
14 15 5.1e-07 3e-05 23.4 2.1 1 23 804 826 804 826 0.98
15 15 0.00073 0.043 13.5 0.8 2 23 832 853 831 853 0.96

Sequence Information

Coding Sequence
ATGAGAATTGTTTGTTCTGctttaaattgtaaatattccTCAGAAGATGAAGATTCATCAAGtgttattttcatcaattttccTAACGATGACACGGCCAAGGCATGGGCAGAAAAGTGCGGCAGATCGGATTTGGTCGAAAAGTCGAATGCGGAATTGCacttaaattattatatttgttctCATCATATAGAAGATCGCTGTTacataagcaaaaatattccTGTTATTATAGAACAAGGCGCTGTTCCTACCTTATTTGGGACCAGCTCACGCACTGATAGTGAagattctataaatatatttgataagcCGCAACATCTTCAAGAAGCAGGTGATAATGTATCGCTAACATATTGCAACATGAATATCGAGACAAACGAATATCATAGTCTCACCATCAGATTTTCCGATTTGTGTCGAATTTGTGGCGAGGTAGTTCTGGATGGAGTAGATATTTTTGCAGCTAAAAGTATAGAGcttaaattaacagaaaagataaatttgcatATGCCCATTTCGATTGACACGGATGATTCGATGCCACAGAAATTATGCTCTGAATGCTGCAGCAAATTGGAGATTACACATTTGCTTGCTATCTCGTGTTTGAAAACTGACATAAAATTGAAGAAACTTTTAAACGTTGAGAAACATCTAGAATATGAAAGTAAATACAACGCATTGGTTGAGAAATGTTTACTAGAAGCAGATGCAGAAATATGTATGGATAATAATACAAATCCTGATACTGCATCATTTGCTATGAATAAGATGGCAAATCCTGATTTAGAAACAAGTTTGGAGGAGttagaaaatgaagaaagtcCTGAAGCACAGAACATTAATTTTCAGTGCATTGATAAAGGTTTTATGCAATCAGAAATAAGTACTATAGGTCAAACTTATAAAGAATGTAATAGTAAAGATAACAGTAATTGTGCAGTGAAAGAAATATCGCAAGTCGAACAAGACAAAATTCGGAATAGtaaacgcgatatttcatGCTCTCAGTGCcagaatttttatgaaacacaggaaatatttgagaatcataaaatattttgtataaagaagaaagatacTTCCGAATACATAACAATGTCTAACATGTTACAAGGTAAAAAGGACATAGATGTGGTAGTTAACACTGAATTAGAAATAGAAAGTTCTCACACAGGCAACGAAAAACTTGAAAGCGAACAAACAATTGATAAACCTGAGATCTCTGAGTCAGAGCAATTGTTACATTGTACAATTTGCAGTGAACTGTTTAAGACTCAACAAGATTTCGACAAGCATTCACATAAAAATCTTGCCGAAAATGATACAATAGGAGTCCGTAAAAGATGTGGTCATTGTAAAGaaatgtattataataaaaaagatctGTTAAATCATATTATGCAATTGCACGGGGGAAAATTATTGGTTCGGTGCTTCACGTGCGATAAGACGTATGAAAAATGGTCTAGTTTGGACATTCATGAAGCTACTCACAGATTAGACAAGCCATATCTGTGCGATTTGTGCGGAAAGAGTTTTAAGCACTCCAACTATTTAAGAGGTCACAAGAGAATTCATTTAGAcgaatctaaaaaaaaaagacacgtGTGTGAAGTTTGTAAAAAAGCGTTTAGATCACGGTTTCATCTGAGAGAACACAAAAATCAACACGAGGGCAATAAACCGTACACTTGCGAGCAGTGTGGGAAAGCTTTCTACAGGAGGATTCAATTGCGACAACATAAATTATCGCACggagtaaataaatacatgTGCTCGATCTGCAACGCGACGTTCAATCGCAGGGGAAATATGAATTCACACGTGAAACGACACAGCAACGAGGATGGAATGTATACCTGCAGCGTTTGTGCTCACAAGTGTAAGTCCATGAGCGAATTGAAGACGCACAGAAAGAACCACACCGAAGAAGAAATAGTCGACAGCATTAAGAAGAAATCTTCCGACAAGGAGATATGGCGGTGCAACGTCTGCAACAAAGTGTTCTCGAAGCGCAATGTCTTGAAACAGCATGAGCAGACGCACGAGAGGGATAAGATTTACGTGGAATGTGACGAATGCAACAAGAAATTGGCGAACAAGAACTCGCTGATGTATCACAAGAAGTCCGTGCATCAGAAGGAGAAGCCGCATATGTGTCAGTATTGCGGGAAATCCTTCATTTCGAAAGAAGCACGACTGACCCACGAGAGGATACACACTGGCGAGTGTCCCTACGTCTGCAAGGTGTGCAACGTGCGGTACAGGTGTTCGAATAATCTCAACCAACACATGAGGACCCACACGGGTCTGAAGCCGTACACGTGCAACTATTGCAACAAGAGGTTCGCGCGCAAAGGCACGTTAACCGTGCACGAGAGAACCCATACGGGTGTCAAGCCGTATCCCTGTGAAATTTGCGGTAGATGCTTCTCGCAGAAGAACGACATGATGAAACACGTCAAGACGCACCGCTGTAAATCGTTGCAGTGCGACCGGTGTAACGATGTTTTCAAACGGAAGAAAGACCTGCTGAAACATACCGCCGTACACGATACCTCGGCGATCCTCAACTACGTCGACACATGTCCTTCAACCTTACGCCAGTACGACTCCTCTCTGAGATTGAACATCGGTAATTCCTGA
Protein Sequence
MRIVCSALNCKYSSEDEDSSSVIFINFPNDDTAKAWAEKCGRSDLVEKSNAELHLNYYICSHHIEDRCYISKNIPVIIEQGAVPTLFGTSSRTDSEDSINIFDKPQHLQEAGDNVSLTYCNMNIETNEYHSLTIRFSDLCRICGEVVLDGVDIFAAKSIELKLTEKINLHMPISIDTDDSMPQKLCSECCSKLEITHLLAISCLKTDIKLKKLLNVEKHLEYESKYNALVEKCLLEADAEICMDNNTNPDTASFAMNKMANPDLETSLEELENEESPEAQNINFQCIDKGFMQSEISTIGQTYKECNSKDNSNCAVKEISQVEQDKIRNSKRDISCSQCQNFYETQEIFENHKIFCIKKKDTSEYITMSNMLQGKKDIDVVVNTELEIESSHTGNEKLESEQTIDKPEISESEQLLHCTICSELFKTQQDFDKHSHKNLAENDTIGVRKRCGHCKEMYYNKKDLLNHIMQLHGGKLLVRCFTCDKTYEKWSSLDIHEATHRLDKPYLCDLCGKSFKHSNYLRGHKRIHLDESKKKRHVCEVCKKAFRSRFHLREHKNQHEGNKPYTCEQCGKAFYRRIQLRQHKLSHGVNKYMCSICNATFNRRGNMNSHVKRHSNEDGMYTCSVCAHKCKSMSELKTHRKNHTEEEIVDSIKKKSSDKEIWRCNVCNKVFSKRNVLKQHEQTHERDKIYVECDECNKKLANKNSLMYHKKSVHQKEKPHMCQYCGKSFISKEARLTHERIHTGECPYVCKVCNVRYRCSNNLNQHMRTHTGLKPYTCNYCNKRFARKGTLTVHERTHTGVKPYPCEICGRCFSQKNDMMKHVKTHRCKSLQCDRCNDVFKRKKDLLKHTAVHDTSAILNYVDTCPSTLRQYDSSLRLNIGNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-