Dqua006479.1
Basic Information
- Insect
- Dinoponera quadriceps
- Gene Symbol
- -
- Assembly
- GCA_001313825.1
- Location
- NW:1038576-1043544[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0091 0.53 10.1 6.0 1 23 25 48 25 48 0.96 2 18 3e-05 0.0018 17.9 0.3 1 23 54 76 54 76 0.97 3 18 0.00065 0.038 13.7 3.5 1 23 82 104 82 104 0.98 4 18 0.0014 0.084 12.6 3.6 1 23 110 132 110 132 0.97 5 18 0.0039 0.23 11.2 5.4 1 23 138 161 138 161 0.97 6 18 5.7e-05 0.0034 17.0 2.4 1 23 178 201 178 201 0.95 7 18 0.05 3 7.7 0.8 3 23 212 232 210 232 0.95 8 18 0.00037 0.022 14.4 0.4 1 18 238 255 238 255 0.95 9 18 0.0019 0.11 12.2 0.5 2 23 290 312 289 312 0.97 10 18 5.1e-06 0.0003 20.3 0.3 1 23 318 341 318 341 0.97 11 18 0.58 34 4.4 0.0 2 23 347 369 346 369 0.95 12 18 6.4e-05 0.0038 16.8 0.1 1 23 374 396 374 396 0.98 13 18 4.6 2.7e+02 1.6 3.1 2 23 403 424 402 425 0.93 14 18 1.3e-05 0.00079 19.0 0.3 2 23 448 470 447 470 0.95 15 18 8.2e-05 0.0048 16.5 4.8 2 23 536 558 535 558 0.96 16 18 0.00025 0.015 15.0 2.8 3 23 563 584 562 584 0.94 17 18 0.0027 0.16 11.7 3.1 1 23 589 612 589 612 0.98 18 18 0.026 1.5 8.6 0.1 8 23 625 641 619 641 0.91
Sequence Information
- Coding Sequence
- ATGTTTCTGGCGAAGATCGTAGAAAATGGTTGGCCAATCAGACAACGGCGGGGCTCCAAGACGCGCGCCGTGCATCAGTGTGTCAAGTGCGGCGCCTGCTTCCGGCACACGCGTAAGCTCGTGGAACACCTGAAGAATCTGCACAACATCGAGCGCGCCTTCAGCTGCGACGAGTGCGACCAGACGTTCCGCAGCCCGATGAACATAGCCCGCCACAAGCTGATCCACACCGGGCTGAAGGTGTTCGTCTGCGAGCTCTGTGACTACAGCACTAACCAGAAGTCCAACCTGGAATGCCATCGCCGCCGGCACGCGCAGGACTACAGCTTCAAGTGCGAGACTTGCGAGCGTAGCTTCTACCATCGGACCGAGTACCTGGAGCACCGGAACGCCCACACCCGGAAGAACCTCTACCGCTGCGAGCACTGTCACAAGAGTTACCTCTACAAGAAGAACCTGTCGGTGCACCTGGTGACACAGCACGCGGCCGCCAATCGGTCGACCGGCCCGAAGAGCAACGCGCGTGCGAGGCACGCCTGCAAGCTCTGCCCGGAGAGGTTCGTCTACAAGAGATTGTTGAGGCAGCACATGAAGAGTCAGCATGGGCTCTCGAGCCCGCCTACTAAGCACCTGTGCGATCTGTGTGGCGCCGAGCTGTCCTCCCGGCGACGACTGACTGTGCACAAGCGCGCCCATACCGGCGAGAAAGTCTTCGAGTGCGACACGTGTGATAAAAAATTCGCCAGCAAGGAGAACCTGATGCGGCAAAAGCTTCACGCAGAGGACGTCGTTGGTGTTGCACCTGCGCTTCCACTCGGGCGAGAGGCCGTATCGGTGCCCCGAATGCGGTTCGAGAGTATCGCGAAGACCTGCGAGATGTGCCAGGAGAAGTTCTACTTCGTCTCCAGGCTGGTCGCGCATCTGCGGACCGCGCATGGCATTGACCGGCCCTTCAGCTGTGCCATTTGCGGCAAGAGTTACCCCCAGCAGTTCATGCTGAACGCCCACGTGAAGAAGTCGCACACGCCGAAGACGGTGCCGTGCGGCGAGTGCAGTTTCATGGGCGTGAGCGCGATCGACGTCGAGAGGCATCTGAAGCGAGCCCACCGCGCCTTGAAATTCACCTGCGAGATCTGCAGCGAGAACTTCGACGACAAGGACGCTCTGGTCGCGCATACGACGATGCACAACTTCACGCAGTATCAACGCTGTAGCGCGTGCGACAGTGTCTTCGACGATGTGTGCAGATTGAAGGAACACAATCGTCTGCATCACTATGACCCGGCGACGGCGGGCGACAAGACGAAGAGGGGTTCCGCCGGCAAGAACGCCACCGAGCTCAAGTGCGACGCTTGCGGCGAGGTGTTCAAGTACAAGTCGATGCTGAAGCAGCACCAGGCGAAGGCGCACGGCGATCCGCTCCGCAGCGAGAGACGCAGtaaCTGCCCTTCGGATCCTTTGTATATCCCGGATTCCAAAAATTCTGGTGGCTCAGTTCTGCAAGTATCGATTTCCAATGGTAATAATGCCTTGGTTAAGGATTATCCGGAAGCCCAAGATGTCACAGCGGGAAAAATCGGCAGAAAGAAAGCGAAGAGGATCTTGGAGTGTCCCATTTGCAGCAAACGTTTTAATTTGAAACACCACGTGAAAAGGCACATGAGTACACGTCATCGTGTGAATCATTGCAAACAATGCGACAAGAAGTTCCGCCTCGAGGAAGACTTGAGGCGCCACCAGATATTGTATCATAAACTTACCGAATATTCCTGCAACATATGTCCGTTCGTGACTATGCACAAGGGCTTCTATACGCGGCATTTAAGGAAATCACACAAGGAGGTGCAGATGCCAGTCTgtaaattaagtaaatatgccTGCAAAACTCAGGCCGAGTTGAGAGCCCACATGAAAACAGTTCACAAGGAATGGTTCCTTCTGCTCTATCTGTTCTGCGGCGTTTGCATACCAGCAGAGTCTAACGCGACACTTGCGAAGTATACACATCCCATATTGTAA
- Protein Sequence
- MFLAKIVENGWPIRQRRGSKTRAVHQCVKCGACFRHTRKLVEHLKNLHNIERAFSCDECDQTFRSPMNIARHKLIHTGLKVFVCELCDYSTNQKSNLECHRRRHAQDYSFKCETCERSFYHRTEYLEHRNAHTRKNLYRCEHCHKSYLYKKNLSVHLVTQHAAANRSTGPKSNARARHACKLCPERFVYKRLLRQHMKSQHGLSSPPTKHLCDLCGAELSSRRRLTVHKRAHTGEKVFECDTCDKKFASKENLMRQKLHAEDVVGVAPALPLGREAVSVPRMRFESIAKTCEMCQEKFYFVSRLVAHLRTAHGIDRPFSCAICGKSYPQQFMLNAHVKKSHTPKTVPCGECSFMGVSAIDVERHLKRAHRALKFTCEICSENFDDKDALVAHTTMHNFTQYQRCSACDSVFDDVCRLKEHNRLHHYDPATAGDKTKRGSAGKNATELKCDACGEVFKYKSMLKQHQAKAHGDPLRSERRSNCPSDPLYIPDSKNSGGSVLQVSISNGNNALVKDYPEAQDVTAGKIGRKKAKRILECPICSKRFNLKHHVKRHMSTRHRVNHCKQCDKKFRLEEDLRRHQILYHKLTEYSCNICPFVTMHKGFYTRHLRKSHKEVQMPVCKLSKYACKTQAELRAHMKTVHKEWFLLLYLFCGVCIPAESNATLAKYTHPIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -