Dqua002295.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dinoponera quadriceps
Gene Symbol
-
Assembly
GCA_001313825.1
Location
NW:110083-116105[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.072 4.2 7.3 3.1 1 23 357 379 357 379 0.97
2 19 0.038 2.3 8.1 0.5 2 23 420 441 419 441 0.95
3 19 0.0037 0.22 11.3 0.2 3 23 535 556 533 556 0.94
4 19 0.038 2.2 8.1 2.0 2 23 560 581 559 581 0.97
5 19 4.8e-05 0.0028 17.3 1.2 1 23 609 631 609 631 0.99
6 19 2.6e-05 0.0015 18.1 0.7 1 23 639 661 639 661 0.95
7 19 9.9e-05 0.0058 16.3 1.7 1 22 667 688 667 691 0.91
8 19 0.0015 0.086 12.6 6.8 2 23 760 781 759 781 0.95
9 19 0.00015 0.0086 15.7 4.5 1 23 822 844 822 844 0.96
10 19 0.00035 0.021 14.5 1.5 1 20 849 868 849 870 0.94
11 19 0.063 3.7 7.4 0.2 2 23 881 902 881 902 0.98
12 19 2.1e-05 0.0012 18.4 0.5 2 23 940 961 939 961 0.97
13 19 2.5e-05 0.0015 18.1 2.7 1 23 966 988 966 988 0.95
14 19 0.0002 0.012 15.3 3.9 1 23 994 1016 994 1016 0.98
15 19 3.5e-06 0.00021 20.8 0.4 1 23 1032 1054 1032 1054 0.95
16 19 2.9e-07 1.7e-05 24.2 0.6 1 23 1060 1082 1060 1082 0.99
17 19 3.8e-05 0.0022 17.6 0.4 1 23 1088 1110 1088 1110 0.97
18 19 0.00098 0.058 13.1 4.1 1 23 1116 1138 1116 1138 0.96
19 19 0.0039 0.23 11.2 0.6 1 20 1144 1163 1144 1165 0.90

Sequence Information

Coding Sequence
ATGGGATCAGCCTCTTCGTCTGGCGTTATCACAGTCCAACTTCGTGATCCACCAAGTGGCTCCGAGTCGCGGTCCACCAAACAAAACATGGACGCTGTGGAGATTGATACGTCGGAGGCTCCGCCGCAGCAGAGTGAGGACATATGTCGCGTGTGTTTGCTCGGTAGCTCGGGGATGCGCGACCTTTTCCAGGATAGCATGGACGCGTCCCTCTCGGCCAAGGCGATGAGCTTCGCCAATGTTAAGATGTTAGCAGGCGACGGACTACCAGCACAACTGTGTTATGTCTGTGCCGATAAGCTGGAGTCTGCGTATGAATTCAAGCTACAAGTGGAGCAGGCGGACGGTGTTCTGAGAGAGAGGTTCCTCGGTATGAACGTAAAAGAGGAGATGTTTTTCAACGAGGTCGAGATACATTTGGATGATGAGAAAAATGATGCCATAGGTGAGTTAAGTGATGGTGCCGATTATGAATCCGCCACCGCGGTACCGCCGCCAGGACAATCGGAGGATGACAAGAGCCTGTTGAAACACGACCAATTGCTCCTGCAAGACGAACAGCCAGTGGAAATACAGCAAAATCCAGAAGAGGGTAGTTCGCAGGGGATCACGCAGGAAATTAGCGAGAGCATTGCCGAGGTATTGCAGGAAGGACTGGCCGAAAAGGACACCCCAAGTGACATCGAAGCAGCCGTGGATCCCAAAGCTTACAGGGACGAGTCTATCATTCGGAGCCGCGCGGACGCGATTCCGGCGGATGAACACGACTACATCCTGCAGCAGCCAGATCCAACGGCCGAATTCTGTACGGACGAGGAAAGGACGGAGGAGATCGCTCCGATTGAACCGGCAGAACATTCGGAGAATGCCACATTATCGGCCGATCAAAGAGAAGAACCGTCGAGAATCAAGAACGAGACGACGGAGCAGCAGAGCGAGACGAGAAGGAGCAAACGCAAACTGGCTCGTCGGGCCGCCGAGAGGAACTCGGACGAGGAGAATTACTTTGAGAACCTGAATCTCAGTTCCCGGCTGAAGAGGGCGCAGCAGGCGGACAGGGCGGTCTTCTTTATGTGTTACCTGTGCGACAAGCAGTTCCTGTCGAAGAACGTCCTGAAGGAGCACATGCACTCCCACGAGGAGGTCAGGCGCGCTCTCTGTCTGAAGAAAACGCCGGAGAAGCCGCAGAAGGTGCCGCAGAAGGTGATAATCAGCGGCAGCGTGGTGAAAACACCGCCGTCCGGCAAGAAAGCTAACAAGTGCCCTTATTGCGGTAAAGAGTATCTGTACATAATCTCGTTTGATAAGCACATTAAGAAGCACGAgcgggaggagaaggaggggggggacTCGTCGATGCCGCTCGAGGTGTCGTTCGTCGAGGACGATCGCGGTATGATCTTGGACAATTCGGACAGCAAGTACCGAAGACGGACGAGAAGGAACACGGTGGCGGACGGGAAATACAACGATGActacgacgaggaggaggaggaggtggaggaggaggaggaggacgacggcagcggtggcggcgccggcgacgacgacgacgacgacgacaagaacgagagagcgaagcTCAACGAGGCGAAGCTCGCGTGCGACAAGTGCCCGCAGATGTTTGGCACGAAGCTGGGCCTGAAGAAGCACGTGTCCGTGCGGCACACCGCTCAGAAGTGTAACGTGTGCGAGGAGGAGTGCGACAACCTGCTGCAGCTGCGGAAGCACCGCGCCAAGCACATGAATTTGGACATCGTGCAGAAAGAGAGTAAaaacgaggacgaggaggaggagggcggcgaggaggaggccgGGAAGGAGTACAAGTGTCCCAAGTGCTCGGCGATGTACGTTTTCAAGAAGAGCCTGCTGAAGCACATGGAGACGCATTACGGGACCAACAATCACAGCTACAGCTGCAAGGTGTGCGGCCAGCAGTTTCCGCGCAAGGACCAGATGCGCAGGCACGCCGAGCAGCACGGCCGCGTCAAGGCTTACAAGTGCACCCAGTGTAACAAGACCTTCGGCAACGAGTTCACCCTGAGGAACCACCTGATCTCGACGAGCCACAAGACCTTCCTGCACGGCCAGGAGTACGATCCCAACAAGCGCATCAAACGCGTCGCCGCCAAGGCGGCGCAAAAGATCATCGACAAGATCAAGACGGAGGTCGATCTGGAGagtctcgacgacgacgacaacgacgacggggagTACTACGCCATGCTGGGCAAGCGCAAGCGCGGCCCGCCGAAGAAATGTAAGAAGGAGCTCGAGTGCGGCACCTGCCACAAGCAGTACAGCACGAAGCATTCGCTGATGAAGCACATGGAGCATCACGTGAAGAACGAGAAacagaagaaggagaagaccGCCGCGGAAAAGGCGATCAAGGCCGACGGgggggacgacgacgacaactcGGACTTCGAGAGCGGCCTGGACTGGCCGATGGACAGTCACGAGTGCGTCACGTGCAAGAAACGGTACAGCACGAAGAAGTCGCTTCAGCGGCACCAGCTGCTTCACGAGGAGCCGAACTTCGAGTGCGACATCTGCCACGTCAAGTTCTACCGCAAGGACAAGCTAAAGGCGCACTACGACAAGTGCTCGGAGAAGAACCCGGACCAGGTGAGGAAGTGCAACATCTGCGGCGACCAGTTCGAGAACAACGAAATACTGCGCGTCCACCGGGCCACCCACGTTACCGAGGGCATCCTGACCGAGGAGGACCTGATGGACCTGGACCCGATGCCGgccgaggagaagaaggagagggtGGCGCGCAAGAGGCGAACCGACATCGTCGGCCTCGAGTGCACCGAGTGCAACAAGCAGTACTCCTCGCGGAAGGGCCTGCTGCGACACATCCAGGTGCACGAGGGCAAGAAGTTCCTCTGCGACATCTGCCCGAAGAAGTTCTACCGGCGGGAGCACCTCAAGCTCCATCAGGCCAAGCACAACATGGTGAAGCCGTACAAGTGCCACCGGTGCAGCAAGCGCTTCATCAAGGAGGAGCAGCTGATCAACCACTTGTCCAAGCACGACCGCATGTTCAAGAAGAACAAGGAGAGCGACACCACCAAGAGGTTCCTGTGCGAGATCTGCTCCAAGAGCTTCACCCAGTCCACCACGCTGATAGCCCACCTGCGCGCCCACAACGGCATCAAGCCGTACGTGTGCGAGGTGTGCTCACGGCCGTTCACCACCAACGCCTACCTGAAGATGCACatgcgcacgcacacgcaggAGCGGCCGTACATCTGCCAGTACTGCTCGCGCGCCTTCGCCCGCGCCGACACCCTCTCGAACCACCTGACCTCGCATACCGGCGAGGCCAAGTACCACTGCAAATTGTGCCCGCGCAACTTTCGCCGGCTCAAGTCCCTCAAGGAGCACACGTTCATCCACACCGGCCAGCGGCCGTACGAGTGCCCGACCTGCGACCGCAAGTTCAACAACAATGGCAGCCGCTACGCCCACAGCAAACGTTGCAAGCAGAATCTGCTGATGAGCCAGCACCGTGCGGCACAGCAGCAggagcagcagcaacagcaggagcaagagcagcagcagcaggagcagcagcagcagcagcagcagatTCTGCAGACGGCTCAGCCGGTTCAGGTGCAGGTGCACCCGCAGCTCCAGCAGACCCGAATGACGACGCTGAGCCAGGCGCAGGTGGTGAAGGCACAGAACATCAAGACGATCGCTATCGCGAGGCAACCGGTCGTCGACACGACGATGGTCGGCACGCATCAGATGGTGCAGCATCAGGAGATACTGATGCCGCTTATACTGCCGCTCACCGTCACCCTCGCCGACGTCGGCGAGGAGGTGATACTGCCGGAGGGCACCAAGATCTTCACGACGACGTAA
Protein Sequence
MGSASSSGVITVQLRDPPSGSESRSTKQNMDAVEIDTSEAPPQQSEDICRVCLLGSSGMRDLFQDSMDASLSAKAMSFANVKMLAGDGLPAQLCYVCADKLESAYEFKLQVEQADGVLRERFLGMNVKEEMFFNEVEIHLDDEKNDAIGELSDGADYESATAVPPPGQSEDDKSLLKHDQLLLQDEQPVEIQQNPEEGSSQGITQEISESIAEVLQEGLAEKDTPSDIEAAVDPKAYRDESIIRSRADAIPADEHDYILQQPDPTAEFCTDEERTEEIAPIEPAEHSENATLSADQREEPSRIKNETTEQQSETRRSKRKLARRAAERNSDEENYFENLNLSSRLKRAQQADRAVFFMCYLCDKQFLSKNVLKEHMHSHEEVRRALCLKKTPEKPQKVPQKVIISGSVVKTPPSGKKANKCPYCGKEYLYIISFDKHIKKHEREEKEGGDSSMPLEVSFVEDDRGMILDNSDSKYRRRTRRNTVADGKYNDDYDEEEEEVEEEEEDDGSGGGAGDDDDDDDKNERAKLNEAKLACDKCPQMFGTKLGLKKHVSVRHTAQKCNVCEEECDNLLQLRKHRAKHMNLDIVQKESKNEDEEEEGGEEEAGKEYKCPKCSAMYVFKKSLLKHMETHYGTNNHSYSCKVCGQQFPRKDQMRRHAEQHGRVKAYKCTQCNKTFGNEFTLRNHLISTSHKTFLHGQEYDPNKRIKRVAAKAAQKIIDKIKTEVDLESLDDDDNDDGEYYAMLGKRKRGPPKKCKKELECGTCHKQYSTKHSLMKHMEHHVKNEKQKKEKTAAEKAIKADGGDDDDNSDFESGLDWPMDSHECVTCKKRYSTKKSLQRHQLLHEEPNFECDICHVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDQFENNEILRVHRATHVTEGILTEEDLMDLDPMPAEEKKERVARKRRTDIVGLECTECNKQYSSRKGLLRHIQVHEGKKFLCDICPKKFYRREHLKLHQAKHNMVKPYKCHRCSKRFIKEEQLINHLSKHDRMFKKNKESDTTKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLSNHLTSHTGEAKYHCKLCPRNFRRLKSLKEHTFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLMSQHRAAQQQEQQQQQEQEQQQQEQQQQQQQILQTAQPVQVQVHPQLQQTRMTTLSQAQVVKAQNIKTIAIARQPVVDTTMVGTHQMVQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-