Dcoc003009.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- -
- Assembly
- GCA_963920625.1
- Location
- OY987184.1:24373903-24378003[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.1 12.9 0.3 2 23 227 248 226 248 0.95 2 12 0.91 66 4.0 3.6 3 21 352 370 350 371 0.94 3 12 0.31 23 5.5 0.2 3 23 389 409 387 409 0.94 4 12 0.00072 0.052 13.7 0.3 1 21 483 503 483 504 0.95 5 12 2.5 1.8e+02 2.6 1.9 2 23 558 579 557 579 0.93 6 12 0.042 3.1 8.2 0.5 2 23 601 622 600 622 0.96 7 12 0.22 16 5.9 0.7 1 20 627 646 627 648 0.93 8 12 1.9 1.4e+02 3.0 1.0 5 23 670 689 667 689 0.85 9 12 0.15 11 6.5 0.0 1 23 1070 1092 1070 1092 0.95 10 12 6.3 4.6e+02 1.3 1.3 1 22 1237 1258 1237 1260 0.73 11 12 1.3 96 3.5 1.5 1 23 1302 1326 1302 1326 0.96 12 12 6.1e-05 0.0044 17.1 0.1 1 23 1338 1360 1338 1360 0.97
Sequence Information
- Coding Sequence
- ATGGATCGTCAAAAAGAGTTATTAGAACTTTGCAAACCACTTTCCATAAAATTAACTCGAATATCACATTTAGATATCAATAAATGGAAGCAACGAAGAAAACAATCACAACGTTCCTCTACACGACGTAATATGACAAATTCATGGCAAAAAGGAAATTACCGAAGAAtaagatcacaaaaaaaacgaaaatctAAAAAATACACTGTAAAATGTGTGTTAAGTGACACCGATGACGAATTATCGAAGTTTAAAACATTTAATGACAGTGATAACGAAGTGACGTGGAATAggcataaaaaagaaaaacctaATACAATCGACCGTATAGCACAAGTCTTAGAGATGGAAAGTGCGAAGTTACCGAAGAACAATATgtcaaataatgataaaattgagtgGAAATATAAGCGAAAGCGTAGAAGAGCATCACTTTCATTTGATAATAcagcaaaaaataatgaaaatattgaagtagTGAATccattacaaataaataattcgagTGATATTAATGGTCAAGAAGTAAACCAAGTTAATTTaggaaaagaaattaaaatagtTTCATCGCGCTTAGAAGATTCCGATGATccacaaattgaaaaatggcGATCAAAGAAAAAACCATGTTCTTCACAAAAGTCTAAGACACGTATACCTCCAAAATTAACTAGTCTCAATTGTACAGTGTGTTCTGTTGTATTTGACAGTAAAGAAGAACTTtcaaatcatatttttaaGCATACACAGCGTGAATTACAGGAAGCGTATAAAGCAgcgaaaattaaattacaagaAAACGATAtcgatgatgatattgaagtGAATGTTGACGAAATCGCTGATAACGATAAAATGCCTGTTAAGCATGACGAAATAGACTGTACAGCATCATCATTTCACAAAGAAATATCACAAACTACTCAAGTTTCATTGCAGCCAGAGAATAAtacattaacaaaaatatcaccGTCGAAGCCAGTTATTTGTTCATGTCATTCtgatattcattcaaataatgatgaaagtgTTCAAATAGAAATGGTTCTTTTTTGTGAAACATGTCACGTGCTCTTTCGCCGTAGTGAATGTTTTGAGACGCATTATCGATTTAGTTCAATATGCAATGCTGATCGGACAAAAGGTAGAACACCCAAATTATTTTGCAGTACATGTCGAATTGTTATCAATACCTTATCAAACATGCGTGAACATTTGGAGGAGCATGCACGCGTAAATTTTCACGGCACCGTTACTTTTGTTTGTAATATATGTCGTGTAGTGTTTTTCGGTGTTGGAACAGTATTTTGTACTCACTGGTTTAATCATGAAAAAGATCCTACATTTGTAGCGAGTCGTTATTCATTCCCAAAATTATGTGTCTCAACTCAAGGTACGAAACCATTTGGTAGTGCATCGAgtgaacaatatttttttgtcgcagAATATGTTTGTCGTTTatgtaaatttcaattttcatcagaAAGTGAACTTACTATTCACATGGAGAAAGATTGTAAAAGTGTCACAGCACAAATTCAAGTACAAAACAAATCTCCACAATCGAAGACTGTTACGAGtaatttaaaatcaaataaattagggtttgaaaaaaatcgaattaaaattgattcgCTACCGTCAGACCCATTAGATGTGGTCAATAAATGGATATGTGAATTTTGTAAAGGATGTTATTCAAATCGTGCTTCATTTGATGAACACAGTACAAAACATTTGCAAGAGGATGGATATCCTGGATACCACGGTGTATTCCAATGGAATGCAACAACAACATGTATATGCAATGTCTGTCGGGGtgtttacaataatttacaaGATTTAATGAATCATTGGATTACCCATGAagttatcaaatttatttgtagtgtttgcaatgaaaaatgttCATCTTATAGAACGTTTGGAGCGCATATTTCTTTGTCCTGTTGGAAATTTAAGCCTGATTGTCATGTGTGGTTCAATCGTCAACATCGCTCCTGTATAATTTGCAAGTCTACCTTTGAAACTGCTGAAAAATTGGCACATCACTATACATTCGATCATACAACGGAAActgtaaacaaaataatttcacaaacTCTATCGCGATCTTCACCAATTGTAGAAACTTCACCAGTAATTGACAAATCGACAAGCCTAACATctgtggaaaataaaaatcaaagagTCATTGAAGAATCAACTGAAGTTATTGATAAAGAAAGTCAATCTGTAGATTCAATTGTTCATGCTTCAGCAGTTGGTGATGATATTCAAACTGCTGATTcagatattgaaaattcaatccaCAAAGAATCACCGATGCAAGAAATTAGTACAATAAAAGTAACAATaccaaatttaattgaaaaaccaGCTATCTCATGTCAAGATCATTCTACTAGTAATCCAATAAACTTTCATAGTAGTGTACAAAGTGAAATATCATCAGAAATTTGTGAATCGACGAGTGATTCAGTTTCGATCAACTCATTTTCTGAATCAAATACGTCGAACTCTCCATCAATTACAAAAAGATTGAGCAGCAAACCATTAAATGTAAACCAATCTGCCATGGAGATTACAATTAGAGATACATGTTTACATGGATCCAAAGTAATAACTACAAATACTGCCGatgtaaataatgatgttGATAATCCTGTTGCATCGCAACATATGAATATTAGAAATTTACAACTATTCCAGTCAATAGCAACTGCCTCAATAAATTCCAAATCGCCAATTAAACTGAATTCATTGAAGAGGCCTTCAGTGATAAATTGTATATCGGGATtgaataatggaaataatCCCATAACAATAATTAGTGAAcctaaaattattgaaaaagtgaataaaattgcaGATAAAGTCGTAGAAATAAGTGAAAGTGATGAAtctgatattattgaaatttcaaataatgcaaaaaatcctgaaattacttcaataaaaaataaaaatatatgtgaaacaGAGTTGACGTCAAAGGAATGTGAATTAGAAAATCAGAAAAGCAGTAATTCATCCAATGTTGTTGACCCACTTAATCAGGAGGCATCATCCAATACCAAAGATGCTCGGTCAAAtgttattaaatcaattaatgataTAGATGAATTCTCAAACAATTCTGATGCATCGCGACCACGGGGATTTTtacgagtaaaaaaatttacagagCTTCAAGCGGTACGAAATTATATTTGCACTCAATGTGCCGCAgcatttgataatattaaatcactGGAAGAACATGTGATTGCTCATGATAGACGAATGAATCGAAATGAAAAGCATCCAACAATGATGGCGGCTTTAATATTGCCACAAGTTGATCCAAATAATGTAGTAAAAGAATCTACCAAGTCTACAGCACTGCCAGATATTTCCCAAATAGctgaaaaaagaatattacCCTGTGTTCCACAACGAATCACAAATGAGAATGGGAGACAAGTTAGTATATTAATGAATGGACCAGAGAAAAATAGTTCACAAAATATTCCTCCAATgcaaaatgaaacaaacatacaaaatattcGAACTGGTCAAACACATAATCACCAATTAAATGTAGTTTTCCCTTGTGGAAATCctgataatttcaataatcatttatcTGCCAATAATTCGAATCTCAGTGCACCAATACCCAGTGCTAATTTGATTAGACCTAATAGttttgagaaacaaaaaatttacactTGTAAGGTTTGTAAATATACCACGTTAGATAAAGAAAGAATTGTCCAGCATGTTAAATACTTTCATCTTGGTAAAATCTCACAAACTAATATTCACAATACCAGTGGTCAAAATACCTCTGAATTTGTTCAGCAATTGGATTTCATTACACCACCTAACAATGGACTGCATTTAAATACGGTGCCACCATATAGATGTAATTTATGTACAAACTATCAATATAGTACGCTTGAAGAGTTTGCACAACACTTTCAAACAATGCATTCTACTTTaattccaaaaaatatttatcaaccaTATGTTTgtaatatatgtttttttgcATTTCCAAATAATAGTGAGTTAATAAGTCATTTGAATGGTCATCAAAACTTGAGATggacatga
- Protein Sequence
- MDRQKELLELCKPLSIKLTRISHLDINKWKQRRKQSQRSSTRRNMTNSWQKGNYRRIRSQKKRKSKKYTVKCVLSDTDDELSKFKTFNDSDNEVTWNRHKKEKPNTIDRIAQVLEMESAKLPKNNMSNNDKIEWKYKRKRRRASLSFDNTAKNNENIEVVNPLQINNSSDINGQEVNQVNLGKEIKIVSSRLEDSDDPQIEKWRSKKKPCSSQKSKTRIPPKLTSLNCTVCSVVFDSKEELSNHIFKHTQRELQEAYKAAKIKLQENDIDDDIEVNVDEIADNDKMPVKHDEIDCTASSFHKEISQTTQVSLQPENNTLTKISPSKPVICSCHSDIHSNNDESVQIEMVLFCETCHVLFRRSECFETHYRFSSICNADRTKGRTPKLFCSTCRIVINTLSNMREHLEEHARVNFHGTVTFVCNICRVVFFGVGTVFCTHWFNHEKDPTFVASRYSFPKLCVSTQGTKPFGSASSEQYFFVAEYVCRLCKFQFSSESELTIHMEKDCKSVTAQIQVQNKSPQSKTVTSNLKSNKLGFEKNRIKIDSLPSDPLDVVNKWICEFCKGCYSNRASFDEHSTKHLQEDGYPGYHGVFQWNATTTCICNVCRGVYNNLQDLMNHWITHEVIKFICSVCNEKCSSYRTFGAHISLSCWKFKPDCHVWFNRQHRSCIICKSTFETAEKLAHHYTFDHTTETVNKIISQTLSRSSPIVETSPVIDKSTSLTSVENKNQRVIEESTEVIDKESQSVDSIVHASAVGDDIQTADSDIENSIHKESPMQEISTIKVTIPNLIEKPAISCQDHSTSNPINFHSSVQSEISSEICESTSDSVSINSFSESNTSNSPSITKRLSSKPLNVNQSAMEITIRDTCLHGSKVITTNTADVNNDVDNPVASQHMNIRNLQLFQSIATASINSKSPIKLNSLKRPSVINCISGLNNGNNPITIISEPKIIEKVNKIADKVVEISESDESDIIEISNNAKNPEITSIKNKNICETELTSKECELENQKSSNSSNVVDPLNQEASSNTKDARSNVIKSINDIDEFSNNSDASRPRGFLRVKKFTELQAVRNYICTQCAAAFDNIKSLEEHVIAHDRRMNRNEKHPTMMAALILPQVDPNNVVKESTKSTALPDISQIAEKRILPCVPQRITNENGRQVSILMNGPEKNSSQNIPPMQNETNIQNIRTGQTHNHQLNVVFPCGNPDNFNNHLSANNSNLSAPIPSANLIRPNSFEKQKIYTCKVCKYTTLDKERIVQHVKYFHLGKISQTNIHNTSGQNTSEFVQQLDFITPPNNGLHLNTVPPYRCNLCTNYQYSTLEEFAQHFQTMHSTLIPKNIYQPYVCNICFFAFPNNSELISHLNGHQNLRWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00452242;
- 90% Identity
- iTF_00452242;
- 80% Identity
- -