Dcoc005964.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- -
- Assembly
- GCA_963920625.1
- Location
- OY987186.1:4404346-4407822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0042 0.31 11.3 3.2 1 23 121 144 121 144 0.96 2 13 0.0089 0.65 10.3 4.6 2 23 262 284 262 284 0.91 3 13 6.7e-05 0.0049 17.0 1.1 2 23 343 365 342 365 0.96 4 13 6.2 4.5e+02 1.4 7.4 3 23 451 472 450 472 0.86 5 13 0.54 39 4.7 0.3 1 23 520 543 520 543 0.93 6 13 0.0032 0.23 11.7 0.5 3 23 588 609 587 609 0.94 7 13 0.00088 0.064 13.5 0.2 3 23 636 657 634 657 0.93 8 13 0.0065 0.48 10.7 3.6 2 23 708 730 707 730 0.96 9 13 0.088 6.4 7.2 4.2 3 23 745 766 743 766 0.92 10 13 0.00014 0.01 16.0 0.2 2 23 811 833 811 833 0.96 11 13 0.2 15 6.1 1.7 1 23 911 933 911 933 0.98 12 13 7.3e-05 0.0053 16.9 0.3 2 23 947 969 946 969 0.97 13 13 0.074 5.4 7.4 0.5 1 23 1040 1063 1040 1063 0.97
Sequence Information
- Coding Sequence
- atgtcATCAACGGTGGCCTGTGAAACGATGCTGGTACCTTCATCAAGTGAACTGGACAGCGAATGCTCCAGCGGAGGAGATGAAGGACAAGACGTACGTAAACGAGTGCGTGATGATACCGATGCCAGCAGTCAAAAAAAACGTCGAAAGCAAACGACCCCCGTGCGTTTTCCAACGTCATTGATGACAGCAGGTGAACGAGGGGAATCTGACGAAGATGAGGatgacaatgaagaaaaacgtGAGGCAGACGGTACAAATGATAATACCATAAAATTGGAAGAAGACATAAGAGAAAAAGGTAAGACGTTACTTCGAGATTTGACCGAGTCAATGCGAGACGAAAATTTAAACACGGAATTTCGCTGTGAATTCTGTGGCCATTTATATAACGACGAGGATACATTAACGCGTCACTTAAATCATGAGCATGGTACAAATAATCAATCGGGAAATATTAGTCCAATGTCACATTCTCAAGTACGTGTCAAACTTGAGCAACAAGAAGAAACGGAAAATCCGGTAAATCTTTCGGGTCTTGGAATGAAACATTTCGCGACTTCTTGGTTAACCGGTCATTCACAAGTGCAATTGCAAGCTCAAGAATCAGAGTGGTCCAATCAGCATCCGGTAACATCATTAACTAGTCACTTACCCAATATTCCATTTCCTGGTGCTCTCGCCCAATACCTTCCCTTGCCAGCATTTTCGCTCGGTGACTCGGGACCACTTGCACGCGTACCCGTTGGCCCAACGCCCATTCGTATTTTCAATCCTGATGCGTATTGCGACCTCTGTAACAAAGAATTTTGTAATAAGTACTTTCTTAAAACACACAAAGCAAATAAACACGGTATTTACGTTGATGCACCAACGACACAAGTCGGTATTATGACCGAATATAATGgaacaaatttttcaaatatacccTTATCGACCGGTAATGTCATTCTAGAACAGCAACCGCAACAACAATCAAGAATTGAAATCCCTACACCGACTTCAGGTCAACAAATTCCAACTGTTCAATGTGACATTTGTCAAAAACGATTTAAAAATGAGGACGTACTTCgtaaacataaacaaaaaattcatattgaattgtTAGATCAGGCGGATTCACAGTCATTGCCCGCGACCGTCCTTGGCGATGATGATAGAGAAGTGTCGAGAAGTAGTCCTAGTACTATGGAATCATTATTCAAACCAGATTATGGAATTGAACAAGAAGAAACTAAATTTATGCCGGCACCGAGAAATCTTTCGCCACAATCTAGTCAACAGGCACGTGAATCTGGCTTCAATGTCGACAGACTACGCAGACTTGGTGTTATAAATCCGGATGCTTTTTGTGAAATTTGTTGTAaagaatattgtaataaatattttcttcgaACACATAAATTAAAACGTCACGGTATTATCATTCAAGATAGTGAAAAATCACCGAACAGCACGGGAACCGCCGCTACGTGGCATCAAATTCAAACAAGTCCATTGAATTTGATTGTCACAGAAAATGCAGCTAGTTCAGAATCAAATGACAATTATGAAGAGTTTGAATGTAAACCGTGTGGTCTTCGATTTCAAACAATTCGACTTTATGAAGCTCACACGGTAAAAATGCATGAGAATGAAGAGTTAAAATCGCCCAAACAAGACATCGAAGAAGAGCGGACTGATTCAATTTCTGAAGATCTTCAAAAATTACAAACTAtgattttacaattgaatggATTGGACTCCAGCAAATCGGCGATATGTGGTATTTGTGGGCGcgaatgtgaaaataaattagcTTTGAAGACACACATGAGTCTGGAGCATGGAACAAATATTTCCGAAGAAGTCACATCACCATCTCAAATTGTGGAGTATTCTTTGAATACCGCTCAATCGACATTTTGTACATTATGTGAAAAAGATTATCGAAGCCAAGACGCATTGAGACAACATATCGCCGAAGACCATCAACAAACTACTACTCCAGCACCAAATAAtccatcaaatatttttcatgtctcAACTCCACCATCAGCAcaaccaccgccaccaccacctaCGCCACCCATTCCACCGCCACCTGATAAAAAAATCAGTTCGTTAACTCCAACATCGAGTTATTgtgaaatatgtaataaagAATTGTGTAACAAGTACTTTATGAAGACTCATATGCAACGAATGCATGGAATCGAAATAGAAAATGGCTCCCAAATTGGTGGTGTTATATGCAATATATGTAACAAAGAATTGTGCAGTAAATATTTTCTACGGGTTCATAAACACAATACACATGGAATTGTTGATGAAGGAGCGACACCGGTTAATAAACCAGAGTCCTATGATTCATCGAATCCAGAAGATGTTTCATTGAAACCAGAACAACTCGGTGATTTGAGTCATCgatattttacacattttacGGAAGTTTGTCCTATTTGTAGTCGAAGATTTAGAAGTATAAAATGGTTGAAGGCACATTTATTGAGTGATCATGCAAAAGTAGGAGTGGAAAAGTGGCGTGAATTAGAACAACAGTATCAGAATACACCGAAAAGTCGATCCAGTAGTTCTTCCAGTCGTACAAGTCAACAAAATACGAAtttaaaaattccaaatgGTTTAGAAGTCACCCAAAATCCAGTTAAAACTAGTGAATATCCTGGTCTCGGTAATCAAGTGCTATCAACTTTATTTGGTGGAACAGAAGAGCAACAGGCAAAAAATTATCGATGTTCTTTTTGTAACTTTACCACAACAGTAttgccatttttatttttacatgaacGATCACACACGAACAATCCcgaaaatttgaatttggaaaataatatgCAGTGTCCTATTTGTTCACAAGCCTTTCCACAACCTGAATTACTTCATCAACATTTATTAACGCGTCATCAATTCTCTGGTTTACTTTCGCAATTTCAATTGCCTGTCAATAATCCACCACCAGAAGAAAATCAAGAGAGAGCTGAAATTTTGGAACAAAAAGACTCGGAAATCAAAGAAGAACATTGTCAAACGACTCCACCAATTCAAACAAATTTAGATAATAGCAAATGTAAACGAGATGAATCAACGGCTGTCCAAGTGACACCACAAGGCGCTTACAAATGTGCTCAATGTGGTTTTGCTACTGCTAatttgaatagaataaaaaaacatgtaaAAAAAGATCATAAATCCCTTGGTGATCCGACGGATTGTGTTATCGATGAGCTGAGTAAGGCATTGCGCGATGTTGCAAATAAACATAAAGTACCTGCAAGTTATGCAATGCCACAAGATGTGAATACTAATCCAGATACTACTGTGATGCAACCGTTCATTATTGAAGAACAAGATTGTGGTGTTAGTAGTGATGTATTTGGAATTGAAAGAAGATTCGCGCCAGCATTAGTCTATCTCCCAGTACGAGCGCGTGTCACCAGTGTACTCTCGGCTTCCTTTACACTCAGTCCTGCCTAA
- Protein Sequence
- MSSTVACETMLVPSSSELDSECSSGGDEGQDVRKRVRDDTDASSQKKRRKQTTPVRFPTSLMTAGERGESDEDEDDNEEKREADGTNDNTIKLEEDIREKGKTLLRDLTESMRDENLNTEFRCEFCGHLYNDEDTLTRHLNHEHGTNNQSGNISPMSHSQVRVKLEQQEETENPVNLSGLGMKHFATSWLTGHSQVQLQAQESEWSNQHPVTSLTSHLPNIPFPGALAQYLPLPAFSLGDSGPLARVPVGPTPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDAPTTQVGIMTEYNGTNFSNIPLSTGNVILEQQPQQQSRIEIPTPTSGQQIPTVQCDICQKRFKNEDVLRKHKQKIHIELLDQADSQSLPATVLGDDDREVSRSSPSTMESLFKPDYGIEQEETKFMPAPRNLSPQSSQQARESGFNVDRLRRLGVINPDAFCEICCKEYCNKYFLRTHKLKRHGIIIQDSEKSPNSTGTAATWHQIQTSPLNLIVTENAASSESNDNYEEFECKPCGLRFQTIRLYEAHTVKMHENEELKSPKQDIEEERTDSISEDLQKLQTMILQLNGLDSSKSAICGICGRECENKLALKTHMSLEHGTNISEEVTSPSQIVEYSLNTAQSTFCTLCEKDYRSQDALRQHIAEDHQQTTTPAPNNPSNIFHVSTPPSAQPPPPPPTPPIPPPPDKKISSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGSQIGGVICNICNKELCSKYFLRVHKHNTHGIVDEGATPVNKPESYDSSNPEDVSLKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLLSDHAKVGVEKWRELEQQYQNTPKSRSSSSSSRTSQQNTNLKIPNGLEVTQNPVKTSEYPGLGNQVLSTLFGGTEEQQAKNYRCSFCNFTTTVLPFLFLHERSHTNNPENLNLENNMQCPICSQAFPQPELLHQHLLTRHQFSGLLSQFQLPVNNPPPEENQERAEILEQKDSEIKEEHCQTTPPIQTNLDNSKCKRDESTAVQVTPQGAYKCAQCGFATANLNRIKKHVKKDHKSLGDPTDCVIDELSKALRDVANKHKVPASYAMPQDVNTNPDTTVMQPFIIEEQDCGVSSDVFGIERRFAPALVYLPVRARVTSVLSASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00996599;
- 90% Identity
- -
- 80% Identity
- -