Dcoc006949.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- -
- Assembly
- GCA_963920625.1
- Location
- OY987186.1:12341186-12346416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.1 1.5e+02 2.9 0.1 5 20 243 258 242 259 0.91 2 18 0.073 5.3 7.4 0.2 2 23 269 290 269 290 0.95 3 18 0.074 5.4 7.4 0.8 1 21 317 337 317 338 0.94 4 18 0.0014 0.1 12.8 3.9 1 22 412 433 412 433 0.95 5 18 0.00018 0.013 15.6 0.1 3 23 443 463 442 463 0.98 6 18 0.048 3.5 8.0 1.0 2 23 473 495 472 495 0.94 7 18 0.26 19 5.7 0.5 2 19 517 534 516 537 0.90 8 18 0.096 7 7.1 2.7 2 23 545 567 544 567 0.93 9 18 0.0026 0.19 12.0 6.8 1 23 578 601 578 601 0.95 10 18 0.0002 0.015 15.5 0.0 1 20 627 646 627 648 0.95 11 18 0.11 7.7 6.9 5.6 1 23 655 678 655 678 0.94 12 18 0.062 4.5 7.7 0.1 1 20 762 781 762 783 0.94 13 18 0.0081 0.59 10.4 4.0 1 20 867 886 867 888 0.95 14 18 0.00078 0.057 13.6 4.9 1 23 895 917 895 917 0.99 15 18 0.58 43 4.6 4.1 1 23 927 950 927 950 0.88 16 18 9.5e-05 0.0069 16.5 0.3 3 23 1125 1146 1124 1146 0.97 17 18 0.00011 0.0084 16.3 0.4 2 23 1224 1246 1224 1246 0.97 18 18 0.00051 0.037 14.2 1.2 2 23 1284 1306 1283 1306 0.93
Sequence Information
- Coding Sequence
- atggcACGTGTTCAAATTTACAACGACTATTTATCCATTATACCTGTATGGTCAGGTATACCCAAATTTTGGAACACTTCCAATTCAAATACTAAAATCAAAGAAGAACCAATTGACGATGATGTTAAACAGTTTCATCATAGTGGAGTTGTCGATGAAGGAATAACGAAATATGACTTACGTGTCCATCAACGTGTGAACACAAAAGTGGTaacatcatataataatactataaAGTCAAATGCGAATAATATGATTAAGGaCCGTAGTATTTATAACGCAAGTGAGAATGCTGATAGTGAATTTGAATCATCTGATGAAACAATCCATAACCCATCAAGAGAATATAACTTACGTTCATCAGCAGTAAATATGTTTTCAACTCAAAAACCTCTAACTCGTTCAAAGCAACgtaaattgtcattattacgAAAGCGTTATAATTGCCATGATTGTCGAGTAGTTTTAGAAAGATTGTGTCTTCCGTCATCAGCCGATAATAAATTGACTAGTAAAATTACgaatgattttaatattgagGATCCGATTACTATAGTAAATTCCCGACCAACAGTTGGCGTGGAATTAAAAAATCTCAAATTAGCTttggaaaaattacaaaatatatataacgattgTAATGAAGttcaaaatattgaagaaatagtCTCATCACAAAATACAGAtacaatttcatcatcaacaaaaatTCTATACGCATCAAGTCTCTGTCAAACTAGATATACCActcagaaaaaattaatttatcattatttgtgCTTCCATACAAATCCAAAATATCGCGAATGCGCTATATGTCGATCATccttcaataatattacagaATTAACTGATCATTTAACATTGCATTGCATTGAAATACCGGAATCAACACATGAACAATCGCCAATTGATTCTAATGATccatgtaataattttaaagatAAATACATGTGTCGAGGttgtaaaaagaaattttggttggtatcaaatttaaaaaatcatgaaCGGAAATGTCCACTTGTGAATGAAATCGCTATGAATTCATCACAAAATCTTCAaagtaataatgaagaaacatCAATTCTCTCATCAGAAAATGATATAACGTTACACATGATGAAACGAAAAACTCGCTCAGACGTCAAATCTAACGCAGTATCAAcgttaaattcaaatatattattaccacCATTCAAGCAGCACCAAAATAGTAGTCGCTcgaatacattatataattgttctGTTTGTCACACAAATTTTACAACCCTTTCGACTTTCAATAAGCATAAACGAAAATTTTCACCTCGCAACGTTAGAAGTTTTTGTAGATATTGCGGTACACCATTTCCCACACCTGCTTTATTAAGCATACACACAAGATCACATATATCACAACCATCATTGTTTGATATTTCTTGTGTTATTTGTCAACAAAGgttcaattcaaaaataattttgcgaCAACACATGATGCATATTCATTATAACGAATTAAATGATGGATTCAATGATTCATACATGTACTCGAggttaaattttgaaaaaacttGTCGTGTGTGCAAAACAGTATTCTCCGATCGAAAGCGATATATTGAGCATTCCATGTATTactatgatgataatattatcgAGTGCACTATATgtcataaaacattttttggaCAATATGAAGCACATGGTCACACAAAAAAAGTACATTATACggagaaaatacaaaaaagtcATGTGTATTGTTGCCATATTTGCAAAGAAGGTTTTGTCTATCCATCACATTTATACTCTCATATGAGTCACGTTCACAATACAAATGTTGAATTACAACAAGATATGTATATTTGCATAAATAAACAAGAGAGTGATAGCGAACAACTATTCTATATGTGCCGGATTTGTGATGAAATGTTTAGCACACCAGGACTGTTGTCCAATCATCAATCGGAATATTCTAATACCGGTGAATACTATTGTTCAAAGTGTAATCGAAGGTGTCAAACACATATATCATTGGAAAGACATACTGAATTGAGTCATTCTAATGAAATACATGATGGCCACGTGAAATGTCATTTGTGCAATGAAGTTTTACCATCGGAATCATCATTGCACTGCCATTtgaaacattttcatttaagTTTACATGCAAATGATCAATCTTCTGAAACATACACAGGCAAATCGTTATGTGAATCATCGCAACAACctgatattgaagaaattacgaatattaatttaggaaaaaataataatgatttgcTCACGTCCAATATGATTGTAAATGAATACAAATGTGCAGCATGCAATATGAAATTCACAAATAACTTGGATTTAGATACCCATTTACTTGAATGTAATACAAAGTGTATCAATAATGAAAGAgctaatatacatacaaatttttctattgCCAGTATTTTTTCAGTTGATTTGGAAGATTATGAAAATTTGTGTGATGAAAAAGATGATGCTACCAATGAAGATACTTTGGATGAAcgaaaaatatcaacaaaaattaACTATTCAAACGATAATTGctataatatcaatgatacaatgaataaaacgaGAAGCCTTAAAAATTCAGTAGAAGAGAAAAACTTTAAATGCGATATATGTCACTGTTTATTTCGACATCCTCAATCGCTTTTAAAACATCAAACAGTTTTTTCAAATTCGGGTGATTATAAATGTGACAAGTGTCAAAGAAGATTCAAACTTGCTAGACACTATGAGTTGCATATCAAAAGACATGGAAAACAATCAAGTTATTTACCAATGCACTATTGCAAGACATGTGACGAAAGATTTGGATCAGCATATTCAAGAAAGACACATTTTGCTCACATACACGGTGTACTGTTCAAACTGCGTCGTAAATCCACTCGCACAAGATGTAACAGGTCCACTGGTCAACAATCCGAACTTCCCCATCGAActaattcaaatgataatcAAAGTAGAACAGTCGATGAAATTCGTGACGAAAATGAAAcgattttaaattcaaatgataattcgTATACTCTGGAAAATGCAAActtacaaaaaattcaaatagaaaatatcGTGGAAAATTGTACTTCTATAATTGAAAATGCACAGCAAAATCATGAGCCAACATCAGTAATTGAATTTGACAAATCGGCAAATCACAATGCAACGATGATAATGGAAATTGTAGAAGTAGAAAATGGAATTgcagaagaaaaacaaaaaataatcgaaCATGAAAATGCAACGGTAGATGCGGAAGAAGAAATTATAATAGTGGAAAATAATGCCAAGGAAGAGGAGCAAAATGCTGTCAGTGAAAGAGaggaaatattgaaagaaagaaatgtaTCTACAAGTAAAAATACGGCAATTGAATTATGCGACATCTGTGGAAACATTTTTACAAatcaaaatgaattgattacTCATCAAAGAAATTCTCACAATATTGAATTAACGATGGATACACTCAGTAGTaatcaaaatgaatttattgatgttgAATCAATAGATActaatgaagatgaagataatCAATCGTTCACAATCAGTGACAATCtgaatgatgatattattcctgattataattgtttatatgatgataatcCAGCGTATCTCACACAATCAGCACAACCAGCAACAGCTGAAAAacaatatgaagaaaatactCTTGCGAAATGTAAGATTTGCGATATAACTTTTATCGGTGCGAAAACATTAAACACACACTTGAGGATACAACACTCCGCAACAACAtcaaacaacaataataatattaagaaaGTGCGTAAAGCAAATTCATGTGGAGTGATGAATGATCATAATGTACAATCAAATTTCCGTCATGTACAGTTGTGCTGTAAATTTTGTGGTAAACAATTTTCAAGtgatcaaaatttaatattgcacATCCAAGGTGTTCATGCAGCaacaattaaaatgaaattcaatgagAATCAGGGTGCAATTTTAATTGGCCAcggaataaacaataatacaaaacaGAGTCAATATTTAGTTCGGGCAAATCCACTAAATCTTAATTCTATAccaatcaattttcaaaatgCAAAAGTACTCTATACAAAaccaataaaaacaaaaagtgatacatcaaattttccaaaaattttgCCAAAACCTAATATTGCAATAACACAAAATCTACCCAATCAAAATACTACATTTCCACGTCTTGTTGCTATTCCTAGAAATTCATTAGTAATACCTTTACGATATCGATtacaaaaattgaatcaacATCATAATGATATTCCGCCATCATga
- Protein Sequence
- MARVQIYNDYLSIIPVWSGIPKFWNTSNSNTKIKEEPIDDDVKQFHHSGVVDEGITKYDLRVHQRVNTKVVTSYNNTIKSNANNMIKDRSIYNASENADSEFESSDETIHNPSREYNLRSSAVNMFSTQKPLTRSKQRKLSLLRKRYNCHDCRVVLERLCLPSSADNKLTSKITNDFNIEDPITIVNSRPTVGVELKNLKLALEKLQNIYNDCNEVQNIEEIVSSQNTDTISSSTKILYASSLCQTRYTTQKKLIYHYLCFHTNPKYRECAICRSSFNNITELTDHLTLHCIEIPESTHEQSPIDSNDPCNNFKDKYMCRGCKKKFWLVSNLKNHERKCPLVNEIAMNSSQNLQSNNEETSILSSENDITLHMMKRKTRSDVKSNAVSTLNSNILLPPFKQHQNSSRSNTLYNCSVCHTNFTTLSTFNKHKRKFSPRNVRSFCRYCGTPFPTPALLSIHTRSHISQPSLFDISCVICQQRFNSKIILRQHMMHIHYNELNDGFNDSYMYSRLNFEKTCRVCKTVFSDRKRYIEHSMYYYDDNIIECTICHKTFFGQYEAHGHTKKVHYTEKIQKSHVYCCHICKEGFVYPSHLYSHMSHVHNTNVELQQDMYICINKQESDSEQLFYMCRICDEMFSTPGLLSNHQSEYSNTGEYYCSKCNRRCQTHISLERHTELSHSNEIHDGHVKCHLCNEVLPSESSLHCHLKHFHLSLHANDQSSETYTGKSLCESSQQPDIEEITNINLGKNNNDLLTSNMIVNEYKCAACNMKFTNNLDLDTHLLECNTKCINNERANIHTNFSIASIFSVDLEDYENLCDEKDDATNEDTLDERKISTKINYSNDNCYNINDTMNKTRSLKNSVEEKNFKCDICHCLFRHPQSLLKHQTVFSNSGDYKCDKCQRRFKLARHYELHIKRHGKQSSYLPMHYCKTCDERFGSAYSRKTHFAHIHGVLFKLRRKSTRTRCNRSTGQQSELPHRTNSNDNQSRTVDEIRDENETILNSNDNSYTLENANLQKIQIENIVENCTSIIENAQQNHEPTSVIEFDKSANHNATMIMEIVEVENGIAEEKQKIIEHENATVDAEEEIIIVENNAKEEEQNAVSEREEILKERNVSTSKNTAIELCDICGNIFTNQNELITHQRNSHNIELTMDTLSSNQNEFIDVESIDTNEDEDNQSFTISDNLNDDIIPDYNCLYDDNPAYLTQSAQPATAEKQYEENTLAKCKICDITFIGAKTLNTHLRIQHSATTSNNNNNIKKVRKANSCGVMNDHNVQSNFRHVQLCCKFCGKQFSSDQNLILHIQGVHAATIKMKFNENQGAILIGHGINNNTKQSQYLVRANPLNLNSIPINFQNAKVLYTKPIKTKSDTSNFPKILPKPNIAITQNLPNQNTTFPRLVAIPRNSLVIPLRYRLQKLNQHHNDIPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -