Dcoc010792.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- Prdm15_1
- Assembly
- GCA_963920625.1
- Location
- OY987189.1:6001543-6004574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.5 6.2e+02 0.9 0.1 2 9 23 30 22 30 0.85 2 15 5.9 4.3e+02 1.4 0.2 2 23 244 265 243 266 0.87 3 15 0.0043 0.32 11.3 2.9 3 23 274 295 272 295 0.92 4 15 3.9e-05 0.0029 17.7 1.2 1 23 451 473 451 473 0.97 5 15 0.00093 0.068 13.4 0.1 1 21 477 497 477 498 0.94 6 15 2.9e-06 0.00021 21.3 2.3 1 23 506 529 506 529 0.97 7 15 0.098 7.2 7.0 2.3 3 20 535 552 534 554 0.93 8 15 1.6e-05 0.0012 18.9 4.1 1 23 558 580 558 580 0.96 9 15 0.22 16 6.0 0.5 2 23 601 622 600 622 0.96 10 15 0.0037 0.27 11.5 3.5 1 23 627 649 627 649 0.98 11 15 0.00074 0.054 13.7 0.1 2 23 655 676 654 676 0.95 12 15 0.0075 0.54 10.6 8.4 1 23 681 704 681 704 0.96 13 15 2.2e-05 0.0016 18.5 2.2 1 23 710 732 710 732 0.98 14 15 5.6e-05 0.004 17.2 2.6 1 23 738 761 738 761 0.98 15 15 0.069 5.1 7.5 6.1 1 23 766 789 766 789 0.95
Sequence Information
- Coding Sequence
- ATGCAAAATAGAAAGAATGGCGCGAATAATATTAAACCGAGTGATCCTTCACAAACTTACATATTGGtgtGTAACATTTGTGGTCAATCTCATGACACTCACGAATGTCCATTCCTTCATGATTTACattatatcTCAGATACACCACAACTTTCCCGAGCACGGCGAAGTTTACCAACCGATCTTGAACTCATCCCAATGGCCGATGGTACAATATGCGTTATTGCAAAACGTGATTTTCAACGTGGAACAACATTTGGACCCTTTGAAGCCAAGCGTAATTGGGCAATGAATCCATTAACATTATTtcctataaaaatatttggaaatgATTATacagaaattttatatctcgATTATTCCGATGAAGATATTAGCAATTGGATGTGCTTTATACCACCGGCATCTAATGCCAAAGAGCAAAATCTCATTTgctatcaaatgaaaaatgatattttttatacagcaATGCGAAAAATTCCCGTTGGTGAACAGCTTCGCGTTTGGTATGCACCATATTATGCAATTAAAATGCAAATGCCGTTATATAGTAATGATTCTATAAATGATGATGCAAtacatttaaatgataatgtaAATGTCAAAGATATAGTTAAAGTAGAAACAAATGATTCAATAATGGATTTTCCAACGTTAAATGAATCATCAGACTTGGCTGAACGACTTTCAGCTGAGCGATTGGGTGCCAAagattataaagaaaattggACGTGTCGTATATGCTCTtcagaaataaaaacagtCGTTACATATGCCAAACATTTAATGGAACATTACAAACCATTTCTTGGTATATTCTGCAATttgtgcaataaaaaatttcaaactacATCTCTTTTAGCGAAACATCATGCACAAAAACATTTGGAATTAAATAGTAACAATGAAACAATAGGAATTCCAATTTCTAAAAATCAACAAGAACAAAATGCTcaaacaattcaatataatatgagCAATACAATTGGACAACCGTCCGatacaataaaagaaatattagaaaaatacaaaacagataaaacaataattgagAGTAGTTGTTCGATAtctgaaaaagaaaatcagCATTCAGATTTTTTACTGCTTGatacaaattcaataaatgtcAACGATTTACTACAAAACAAtagtaatttaattgaaaattctgCACTAAAGTCAATACTTGAAAATCAAtgtttaaatatgaatttaagcTCAATAGCTGATTCAATTTTATCGGAGAACCCATCGGAAAATGATgcagaaaaatttaatgttgagGAACTTTCGTCAGAACTTTTGGATATTTCACCTGATGGTGATGATATATACCAACGAATAGATAATTTTGATTGtgatatttgtgaaaaaaaatttataaaagtcgATTATCTCTATCGACATTTACGAAAACATACAGGTGAATTTATATGTTCAATTTGTCTCGCAGTATTTgcaagaaaagaaaatctcttgtcacacatatgtataaaacaaaaaaattcagtggTTTTTGAGTGTCCTTATTGTCAAAAGCAATTtgctatgaaaaaatatttaaaacgaCATATGCTATCGAAACATTTGACTTTTAATAATTGCAAATGGTGTCACAgtgttttttcatcacaaaCAGAATTAGATGCACATAAGTGTCAAGCACCAAAACATATTTGTACACAATGTGGTAAAAGATTTGTTTATCGTGCACATCTCACTCGTCATGTAAAACTCCATATGAATTCCAAGCCTAAAATagtaaaagtaaagaaaaaaataattgatgttaAACCAACAGTGTGTGAAAAATGTGGTGATGTATTGAAAAatcgaaatatattgaaacaacATTTGAAATCACACGGTGAACGTACATACGAGTGTGACATTTGTCATCGGCGTTTTCATCGTATAGGCGTATTAAAACAACATAAACAAATCCATCAATCACCTCAAATACCATGCAATATTTgtggtaaaaaattaaaaagtaaaaaagcaCTTGATGTTCATGTTTTACTTCatggcaataaaaaatttcaatgtgacaagtgtgaaaaaagttttttccaAAGATGCAATTATCTCAAACACTACAAACACGTTCACagtgaaaaaacaatttacaaATGTACATATTGTCCAACTCAATTTACCAGTGAATCATTATATAACAAACATCAAGACAGTCATTCGAAACCCGGACAATTTAGTTGTCCATCATGTGTAAAATCATTTCATGgacaatatcaattgaaacgCCACATACAAACGAGTCACAGTGATCTTGTATTTCGTTGTCCCTATTGTTCAATGACAGCAAAACATCGTCACAGTATGCGACGTCATTTTGAGAGGCAGCATAAGAATCTAAGTGCTGAATGGGATAAGCCAGGATTTGTGAGTCAACTGGTAGAAAAAATTACTCCGCCGTTAGATACGGAAAAACcttcaattgaattgaataaaaataacattgtgGACAATCGAGAAGTTTTGCTTTCAATAACTGATATTAatgaatcatttataaatccaCCGCCAATATCATTAAGCAATCAAGAAACTATTTTTCAACAGGTGTCAAATGTCAATCAATCGACAAtggaaaataatcaattaccAGTAACTGAAGTGCCACCATTGAATATGAGTGAAATAACGGACACACATTTGACTGAATCTGTTTTaactaatacatatatatttgatgaagaaGGTGGTAATATTATGTTTTATGTATTAGGTGATACTCCGGTAaacttttga
- Protein Sequence
- MQNRKNGANNIKPSDPSQTYILVCNICGQSHDTHECPFLHDLHYISDTPQLSRARRSLPTDLELIPMADGTICVIAKRDFQRGTTFGPFEAKRNWAMNPLTLFPIKIFGNDYTEILYLDYSDEDISNWMCFIPPASNAKEQNLICYQMKNDIFYTAMRKIPVGEQLRVWYAPYYAIKMQMPLYSNDSINDDAIHLNDNVNVKDIVKVETNDSIMDFPTLNESSDLAERLSAERLGAKDYKENWTCRICSSEIKTVVTYAKHLMEHYKPFLGIFCNLCNKKFQTTSLLAKHHAQKHLELNSNNETIGIPISKNQQEQNAQTIQYNMSNTIGQPSDTIKEILEKYKTDKTIIESSCSISEKENQHSDFLLLDTNSINVNDLLQNNSNLIENSALKSILENQCLNMNLSSIADSILSENPSENDAEKFNVEELSSELLDISPDGDDIYQRIDNFDCDICEKKFIKVDYLYRHLRKHTGEFICSICLAVFARKENLLSHICIKQKNSVVFECPYCQKQFAMKKYLKRHMLSKHLTFNNCKWCHSVFSSQTELDAHKCQAPKHICTQCGKRFVYRAHLTRHVKLHMNSKPKIVKVKKKIIDVKPTVCEKCGDVLKNRNILKQHLKSHGERTYECDICHRRFHRIGVLKQHKQIHQSPQIPCNICGKKLKSKKALDVHVLLHGNKKFQCDKCEKSFFQRCNYLKHYKHVHSEKTIYKCTYCPTQFTSESLYNKHQDSHSKPGQFSCPSCVKSFHGQYQLKRHIQTSHSDLVFRCPYCSMTAKHRHSMRRHFERQHKNLSAEWDKPGFVSQLVEKITPPLDTEKPSIELNKNNIVDNREVLLSITDINESFINPPPISLSNQETIFQQVSNVNQSTMENNQLPVTEVPPLNMSEITDTHLTESVLTNTYIFDEEGGNIMFYVLGDTPVNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -