Dcoc007797.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- -
- Assembly
- GCA_963920625.1
- Location
- OY987187.1:2202836-2205739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.17 12 6.3 1.9 3 20 134 150 132 152 0.92 2 13 0.0072 0.52 10.6 1.8 2 20 159 177 158 180 0.95 3 13 0.00046 0.033 14.4 1.0 1 23 186 209 186 209 0.93 4 13 2.6e-05 0.0019 18.3 1.4 1 23 215 237 215 237 0.98 5 13 0.00086 0.062 13.5 0.5 2 21 415 434 414 435 0.93 6 13 0.00019 0.014 15.5 3.3 1 20 457 476 457 479 0.93 7 13 0.0095 0.69 10.2 0.3 1 23 484 507 484 507 0.95 8 13 7.2e-07 5.3e-05 23.2 0.3 1 23 513 535 513 535 0.99 9 13 0.0015 0.11 12.7 6.3 1 23 542 564 542 564 0.98 10 13 0.00026 0.019 15.1 0.4 3 23 572 592 570 592 0.97 11 13 0.0003 0.022 15.0 0.2 1 23 598 621 598 621 0.96 12 13 2 1.4e+02 2.9 0.2 1 23 635 657 635 657 0.87 13 13 0.12 8.5 6.8 0.0 2 23 737 758 736 758 0.96
Sequence Information
- Coding Sequence
- ATGGAAACGCaattgagtgaaaaatatataacatttccGGTTGCATTGGGTGTACACGAAATCATGCAACAACAGCCACACAATGTTATTACATcgcatgaaaatatttgtgaaacaacggaaaaatataatattcataatggTTTAACAGTGGCAGTCACATCAAATGATGGCAATGATGAAATTCCCGAAATTCAATTGGCACCACAGATTCCACAAGAGACCATAAAAGTCATAACGGAAAAATCAAATGTAGATGAAAATACAGTTGTGTATCCAATTTATATCAAGCAAGAGGATCAACAGCAATATATATCAGCTGACGATGAGTCAATGGCAGTGGAAGCATTGAGACAGCTCGGTGGAATGTATCCAtattttgaagataaaaaaattaattgtcctAAATGCACAAATAGTTTCACTCAAACACAATTTCATAAACATCAAGAATTTTGCATTGCAGAAAAATTAACTTGTACCACGTGCCACGAGATATTTGAGAGAGAAATTGATTTAAACAATCATATGGTTTGTCATCAAGTTGATCGTCCACATGCGTGTCGAACGTGTGGAAATTTATTTCGTTCAAAAGTTAATCTTCAAGCTCATATGTCTCAAGTGCATCAAGTAGGAAAATCACACAAATGTACAATATGCAGTGCGGATTTTCAGAGACCATCAAGTCTGTCAAATCACatgaaaattcatacatatattgcTGGACGTGCAATAACATCACAATCcacaacaaatattattaatcaaacgTCGGATACACTAAAAAAATGGTCagacaatacaaataattgtgaatcaCAATCACATCTTTTATCTACATGTCCAACATCATCTGTTGGACAAACTATTCAAAATTATGATGTTACCCAAGTACAATGGTCAGTTCCAACGTATACATTTCATAATGATCATTCAAATTCAACTATTATTGATCATAGTGAGAAAATGGATGGATTGCAAGAATTTGCAGTAATGCCAAATGGTGAAGTTACTCAATTTGAATATAcacaacaaaatgaaataactaaTCAAAGTTACGATTTGGATATAgtatcatttgaaaattctaatgaattaataaaagcaGAAGGAATACCGTATACattaaaagaaacaaaatctCATTCGTGTCACGATAAATCAGGTGAAAATTTTCCACAAACTTCACCATTGGCAATACACGAAAAAATTTGTACCTCAAAATTATGGACAATGCCAATTGAGTGTGAATTTTGTGATAAACAATTTCAAGATTCAAATCATTTGGCATCACATCAAACAActtgtgcaaaaaaattaatgcaaactgatattgaacaaggaactataaataataaatggggTAAACACTCTTGTTCtgaatgtggaaaaaaattttcaacaaaacaaaaaatgtttagACATCAATGGATTCATCGTAAAAAAACACACTCTTGTGAGGTATGCGGCTCgcaatttgaaaaacaaattcaattagACGCACACAGATTATCAGCCCATCCTGGCGATTCACCATTCACATGCAATGAATGTGGTAAAAGTTTTGTTTCTCGACAGGGTCTTTGGGAACATGGACGAACACACGCTGGTAGTCCAGCGCATTTTCATTGTGATACATGttcaaaaacattttcatcacGACAAGGATATCTTATACATCATCGTACTCACACTGGTGAACGACCATATGGATGTAAATTTTGTTGGAAAGCATTCAGAGATGGTGGCACATTGAGGAAACATGAAAGAATACATACTGGTGAACGACCACACGTCTGTCCACTTTGTTCACGTGCATTTAATCAAAAAGTTGTTTTAAGAGAGCATGTAAGATGGGTACACGCAGCAAGTAAAAATGAATCGGATATTTCTGGTCCACCATATGTTTGTCCACTGTGCAGTGCACTGAATCAAGACAGAGATGAATTATGCGCTCATATTGTTAAACATTCGGATAAAATGATTGCTGACGCAAAAgctaaaattaataatacacccaaaataaaaaaaacaaataataaaaaaCAAAATTGTAATACTGATAGTCATCCAAAtagtaatgatattaatactgataataataacgatgataattataatgataatgatgatgataataataataatgataataacaacaataataataacgatgatgatgatgatgacgataatgATGGGCAATTAATTTGCGGAATTTGTGGTGACGATTTTAATGACAAAACAATACTTATGGAGCACATTAAAAtccatatataa
- Protein Sequence
- METQLSEKYITFPVALGVHEIMQQQPHNVITSHENICETTEKYNIHNGLTVAVTSNDGNDEIPEIQLAPQIPQETIKVITEKSNVDENTVVYPIYIKQEDQQQYISADDESMAVEALRQLGGMYPYFEDKKINCPKCTNSFTQTQFHKHQEFCIAEKLTCTTCHEIFEREIDLNNHMVCHQVDRPHACRTCGNLFRSKVNLQAHMSQVHQVGKSHKCTICSADFQRPSSLSNHMKIHTYIAGRAITSQSTTNIINQTSDTLKKWSDNTNNCESQSHLLSTCPTSSVGQTIQNYDVTQVQWSVPTYTFHNDHSNSTIIDHSEKMDGLQEFAVMPNGEVTQFEYTQQNEITNQSYDLDIVSFENSNELIKAEGIPYTLKETKSHSCHDKSGENFPQTSPLAIHEKICTSKLWTMPIECEFCDKQFQDSNHLASHQTTCAKKLMQTDIEQGTINNKWGKHSCSECGKKFSTKQKMFRHQWIHRKKTHSCEVCGSQFEKQIQLDAHRLSAHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAASKNESDISGPPYVCPLCSALNQDRDELCAHIVKHSDKMIADAKAKINNTPKIKKTNNKKQNCNTDSHPNSNDINTDNNNDDNYNDNDDDNNNNDNNNNNNNDDDDDDDNDGQLICGICGDDFNDKTILMEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -