Basic Information

Insect: Dinocampus coccinellae
Gene Symbol: -
Assembly: GCA_963920625.1
Location: OY987188.1:5759654-5761664[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00024 0.018 15.2 0.8 1 23 98 120 98 120 0.98

2 11 0.0026 0.19 12.0 4.0 2 23 185 206 184 206 0.93

3 11 5.4e-05 0.0039 17.3 2.2 1 23 336 358 336 358 0.96

4 11 2.9e-07 2.1e-05 24.4 1.0 1 23 364 386 364 386 0.98

5 11 6.6e-06 0.00048 20.2 2.1 1 23 392 414 392 414 0.97

6 11 2.6e-06 0.00019 21.4 5.0 1 23 435 457 435 457 0.98

7 11 8.8e-08 6.4e-06 26.1 3.1 1 23 463 485 463 485 0.98

8 11 4.9e-06 0.00036 20.6 2.8 1 23 491 513 491 513 0.98

9 11 1e-06 7.4e-05 22.7 1.7 1 23 519 541 519 541 0.96

10 11 0.00011 0.0081 16.3 5.8 1 23 547 569 547 569 0.95

11 11 8.4e-06 0.00061 19.8 3.3 1 23 575 597 575 597 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00024	0.018	15.2	0.8	1	23	98	120	98	120	0.98
2	11	0.0026	0.19	12.0	4.0	2	23	185	206	184	206	0.93
3	11	5.4e-05	0.0039	17.3	2.2	1	23	336	358	336	358	0.96
4	11	2.9e-07	2.1e-05	24.4	1.0	1	23	364	386	364	386	0.98
5	11	6.6e-06	0.00048	20.2	2.1	1	23	392	414	392	414	0.97
6	11	2.6e-06	0.00019	21.4	5.0	1	23	435	457	435	457	0.98
7	11	8.8e-08	6.4e-06	26.1	3.1	1	23	463	485	463	485	0.98
8	11	4.9e-06	0.00036	20.6	2.8	1	23	491	513	491	513	0.98
9	11	1e-06	7.4e-05	22.7	1.7	1	23	519	541	519	541	0.96
10	11	0.00011	0.0081	16.3	5.8	1	23	547	569	547	569	0.95
11	11	8.4e-06	0.00061	19.8	3.3	1	23	575	597	575	597	0.99

Sequence Information

Coding Sequence: atggtttgtttatttgttggCCCATCGGGTTCATCACTTGCTGCTAAATTAAGATCACTTTCATGTTTGgaagtTTGGCAAGGGGATGGATTACCAGAAAAAGTTTGTGATCGTTGTGTAACACGAGCAGAATCAGCACTTTTATTCCGCGAACAATGCAGAGCTGCTGATAAAGCATTAAGACAAGCGGCTTTGAAgGTTGCAAGAGTCCCAACACATACAACAATCTCGGGCTGTAAATTGTTCCAACAAAAATGCGGTTTTACACCAAtacaaaatacacaaaaaacatttaaatgtAATGAGTGTGATGctgtatttatgaattatcaagAATTCTATGCTCACACTCGTTTACATACTCAATTTAACAATGAAACTACATCATTACAACATATGCATATTGTTGAATCGcaaaatacatatttcaataatgaaacaacaacaattaatgagacaattatcaatgataatcaTACGATACTGCATTCAAGAAGAGACGATTTAATATCGgaaaatataggaaaaaatgATCGACCTGCATGTGCATTACATTGTTCATTGTGCAATCACACATTTCCAAATAGAAgtcaattgataaatcataattattcacattgtacaaataatattgatatatcgtGTGATAATGataacattgaaattaataatgattctAATGAAATAGCGGAAAATCTAAGTTTTTCACGCACAGTTGATTTAACGTATAcacgagaaaatgaaaataattctgtGGTAATTTCACACATGGCACATCCAGaaaatttaacattaaattCATCGAATGCACCAGAAACGAATGATATTATAAGACGTGACATGACTTTACATAGAGATGAAATATTACGATTTTCAACGTATTCCCCTCACCAACAAAAAGATGATGATACAAATAGTCCTAcgaatttaaatgataataatgaaaattataatcaacttGATATTAATTCGAAAAATTTAACATGTTcgtatagtgaaaaaaaatacgaatgtcACAAGTgcggaaaattatttatgcaaAAATCGAAATTAATCACTCATGAATTATTACACACGGGTGAAAAACcatttaaatgtgaaaattgtgaaaaagcTTACACgacaaaaagtaaattaaatgcTCACATAAGATTACATACAAAAACGGATATACACCAATgtgatatatgtaaaaaaacattttcatatcCGTCATATTTATTGGAACATTCAAAAGTGCATAGACCCAAGTCCAATAAagatattgcaatgaataacaatacattaaatacaaaaataaaattcaaatgttcTACGTGTGGTAAAAAATttcgtttaaaaaaaaatctcagaTCTCATATGAAATTTCACATTGGCATTGgtttatttcattgtgaaaTTTGTGATAAAACATTTAGCGAACAGTATAATTTAAAAGTTCACATGAGATATCATAAACGCGTGAAATTACACAAATgtgaatattgtgaaaaaacatttaatgAAAAGGGAAATTATACGGAACATTTACGAATTCATACAAAAGTCAAACCATTTATTTGCAAATTGTGTGGTAAAGGATTTACCCAATCTAGCCATTTGAAAAGTCACGAAGCATCGCACAATTCTATTCGACCACATCAATGTCAATTATGTGGGAAACGTTTCAAACTCACATCACATCTAAAGAGACACACGGATTTACATACAgcaattaaatcatttaaatgTATGCAATGTAATCAAATGTTTTCACAAGCATTCAGTTTAAAACGACATTTAAAGAGGCACAATGAAGTAAATACACAACAGTCATTTATCGatctttaa
Protein Sequence: MVCLFVGPSGSSLAAKLRSLSCLEVWQGDGLPEKVCDRCVTRAESALLFREQCRAADKALRQAALKVARVPTHTTISGCKLFQQKCGFTPIQNTQKTFKCNECDAVFMNYQEFYAHTRLHTQFNNETTSLQHMHIVESQNTYFNNETTTINETIINDNHTILHSRRDDLISENIGKNDRPACALHCSLCNHTFPNRSQLINHNYSHCTNNIDISCDNDNIEINNDSNEIAENLSFSRTVDLTYTRENENNSVVISHMAHPENLTLNSSNAPETNDIIRRDMTLHRDEILRFSTYSPHQQKDDDTNSPTNLNDNNENYNQLDINSKNLTCSYSEKKYECHKCGKLFMQKSKLITHELLHTGEKPFKCENCEKAYTTKSKLNAHIRLHTKTDIHQCDICKKTFSYPSYLLEHSKVHRPKSNKDIAMNNNTLNTKIKFKCSTCGKKFRLKKNLRSHMKFHIGIGLFHCEICDKTFSEQYNLKVHMRYHKRVKLHKCEYCEKTFNEKGNYTEHLRIHTKVKPFICKLCGKGFTQSSHLKSHEASHNSIRPHQCQLCGKRFKLTSHLKRHTDLHTAIKSFKCMQCNQMFSQAFSLKRHLKRHNEVNTQQSFIDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -