Dcoc002945.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- ECU06_1150_1
- Assembly
- GCA_963920625.1
- Location
- OY987184.1:23615556-23619745[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0068 0.5 10.7 2.8 1 23 369 392 369 392 0.94 2 14 6.8e-05 0.005 17.0 2.3 1 23 425 447 425 447 0.98 3 14 3.9e-05 0.0028 17.7 2.4 1 23 453 476 453 476 0.96 4 14 4.5e-07 3.3e-05 23.8 0.6 1 23 482 504 482 504 0.97 5 14 1.7e-07 1.2e-05 25.2 0.6 1 23 510 532 510 532 0.99 6 14 3.4e-05 0.0025 17.9 2.6 1 23 538 560 538 560 0.98 7 14 0.00022 0.016 15.3 3.1 1 23 566 588 566 588 0.97 8 14 5.7e-05 0.0042 17.2 1.2 2 23 595 617 594 617 0.96 9 14 5.8 4.2e+02 1.5 0.2 10 23 627 641 625 641 0.85 10 14 0.0013 0.094 12.9 0.4 1 23 647 669 647 669 0.98 11 14 2.1e-05 0.0015 18.6 3.2 2 23 676 697 676 697 0.95 12 14 1.2e-05 0.00087 19.4 1.1 2 23 706 727 705 727 0.96 13 14 7.9e-05 0.0057 16.8 3.9 1 23 733 755 733 755 0.96 14 14 0.00016 0.011 15.8 2.3 1 23 761 784 761 784 0.93
Sequence Information
- Coding Sequence
- atggaatCCAGTAGTGCAGTGATATTAGAACCATGTAATGATGAATCAATGATTATTCAATCGGTGAAAGGCATTGTGTATACCACCAATGCTAATGTccaaaataatgtaataaatgacaaatttttAGTTTTAACAAATCCATCTgcatataataatcatcatcagcaGCAAGTAGCATTACTGGAAGCGGCAAATATTAATGCAATGGAACATTcagaaaatacagaaaaattaatagagtTGTGTAGAATTTGTGCCaatgtaaataatcatatgATATCTATACTGGAAGGTGAAGGTGTACAACACGATTTATGCTCCAagattcataaatatttaccaaTTCGTATATCAGAAAATGATACATTGCCACTGCAGATATGTTATCATTGTGCATCAACGTTGCTTGCTTGGCATGATCTGTTAGAGGGTTGTCTAAATGCCGAACAAAAGCTTTTACAAATTCAAGTTGATTTAAACCGTCAggaagaaaaaaaattagcttGCACAATATCTGAAACTGAAGAGACAGTGAATGTAATAAAAGTTCCTGAATCAGATATAGCTGAAATTCAACTAACGTTGCCACAAGCAATCGTTGAAGAGAAATGTAACACATCAAAAAAACCGAATGCAAAAAATGACGACAGATTTGCTGGTTTACGAACGAGGAACATCACGACATGTCCCAAGGTACAAAAGGTTTGGGATGGGCGCGATCCAGTTCACAATATCAATAGACAAACAATCAAACCGAGTGATCaatgtgaatttaatattgttgatgatgatgatgatgataataatgatgatgatgatgatgatgatgatggtgatgatgatgatgatgattatgaagaTATGGATGTTATTGAAAATCCATTAGTTGATCGCCATCAACAAGATATCCAGAATGATATTaaagatgatgataaattaaatgttcAGTATGAATCTTTGAGACAAATAAAATCTATAACTCAAACATCGTTCGAAGAATTAGAAGATAAAACTGAAAGTTTAAATGgccaaaataaaattcaaaaagaaaCGGTGAAACGAAATAATATCGCAACATCTATGAAACGACGTTTTCACACTCATCCATGTATGTATTGTGATTTTACaacgaagcaaaaaaaattattcaacattcaCATGTCCGAGTCACATCCGGATCTTTTATCAGAcaaagatgtaaaaaaatcaccGCGTGTCGATAAAGAAATGATTGAATCCGCACAAATGGAAGTGGATGGacgaatttattatcattgtaaagattgtgggaaaaatttattttcaccatACACTTTTTCATGGCATATGCGTATTCATACAGGTGAGCGTCCATTTACGTGTCATCTTTGTGGCAAACAATTTCGTGTGAATCAAGGACTCTCGCGACATTTAAAAGAAACACATgcaggaataaaaaattttgcttGCGATATATGTAATCGAACATTTGCAACTAAACGAAATCTCGAGGATCACAGACGAATTCATACAGGCGAGCGTCCATACGTTTGCAACGTCTGTGGAAAGGCATTTAAACAAAAAGCATCATTGTTCGTTCATAATCGCACTCACAACGATATATTTCCCTATCAATGTACACACTGTGAACAAAATTTTCGTACAAGACCATCATTAATGGTACACATAACAAAACATACGGGTGAAAAACCTCATGTTTGTGACATTTGCTCACGTGCATTTAGGATAAAACACGAATTAAAAAGACACAAATTAATACATTCAGATGATAAACCATGGCAGTGCAACGAGTGCGGTGTATCGTTTCGTCAAAAGCGATATATGATTAATCATAAGAAATCTAATCATGGCAACGATTCATCAAACACACACGATTTTAATGCTGCTTCTGGATTAAATCGACACACAAAAATTGTACACGACGGTCAGAAAAATTATCCTTGTGGTTTGTGTAAtctaaaattttcttcaaaaagTGCACGTGACGAGCATCGTCGTATACACACTGGTGAACGAACAAACGTATGCGAATATTGTGGCAAATGTTTCACTCAAAAAGCTTCTCTCTACACTCATAAACaatttcacaaaaatttaaCACCATTCAAATGGAATTGTACAATCTGCGAACGAGTTTTTCCACGTCGTCAAGAATTGGAAAGACATCATCTCACTCATACACGTGATAAACCTCATGCCTGTGATATTTGTGGTAAAAAATTTCGTACAAGTGGCTGTGTAAGTCGTCATAAACGCGTTCACGTATCTGGAAAAATGTTTGAATGTGAAATTTGTGATATGAAATTCACCCAAGAGCGTTACTTGAAGAATCACAAACAAtttaaacacaaaaatcatTCACCAACGATATGA
- Protein Sequence
- MESSSAVILEPCNDESMIIQSVKGIVYTTNANVQNNVINDKFLVLTNPSAYNNHHQQQVALLEAANINAMEHSENTEKLIELCRICANVNNHMISILEGEGVQHDLCSKIHKYLPIRISENDTLPLQICYHCASTLLAWHDLLEGCLNAEQKLLQIQVDLNRQEEKKLACTISETEETVNVIKVPESDIAEIQLTLPQAIVEEKCNTSKKPNAKNDDRFAGLRTRNITTCPKVQKVWDGRDPVHNINRQTIKPSDQCEFNIVDDDDDDNNDDDDDDDDGDDDDDDYEDMDVIENPLVDRHQQDIQNDIKDDDKLNVQYESLRQIKSITQTSFEELEDKTESLNGQNKIQKETVKRNNIATSMKRRFHTHPCMYCDFTTKQKKLFNIHMSESHPDLLSDKDVKKSPRVDKEMIESAQMEVDGRIYYHCKDCGKNLFSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLSRHLKETHAGIKNFACDICNRTFATKRNLEDHRRIHTGERPYVCNVCGKAFKQKASLFVHNRTHNDIFPYQCTHCEQNFRTRPSLMVHITKHTGEKPHVCDICSRAFRIKHELKRHKLIHSDDKPWQCNECGVSFRQKRYMINHKKSNHGNDSSNTHDFNAASGLNRHTKIVHDGQKNYPCGLCNLKFSSKSARDEHRRIHTGERTNVCEYCGKCFTQKASLYTHKQFHKNLTPFKWNCTICERVFPRRQELERHHLTHTRDKPHACDICGKKFRTSGCVSRHKRVHVSGKMFECEICDMKFTQERYLKNHKQFKHKNHSPTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -