Basic Information

Insect: Dinocampus coccinellae
Gene Symbol: Snai1
Assembly: GCA_963920625.1
Location: OY987186.1:1018400-1021002[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00088 0.064 13.5 0.1 1 23 264 286 264 286 0.94

2 12 2.3e-05 0.0017 18.4 1.2 1 23 294 316 294 316 0.98

3 12 1e-05 0.00075 19.5 0.2 2 23 324 345 323 345 0.97

4 12 4.7e-06 0.00034 20.6 1.1 1 23 351 373 351 373 0.98

5 12 0.00079 0.058 13.6 1.5 3 23 382 402 380 402 0.97

6 12 3.8e-06 0.00028 20.9 0.6 1 23 408 430 408 430 0.96

7 12 1.1e-05 0.00077 19.5 0.2 1 23 436 458 436 458 0.98

8 12 5.4e-07 4e-05 23.6 1.2 1 23 464 487 464 487 0.96

9 12 2.8e-06 0.00021 21.3 0.5 1 23 493 516 493 516 0.96

10 12 4.4e-06 0.00032 20.7 2.8 1 23 522 544 522 544 0.99

11 12 7e-05 0.0051 16.9 0.4 1 23 550 572 550 572 0.94

12 12 0.00029 0.021 15.0 0.2 1 23 578 602 578 602 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00088	0.064	13.5	0.1	1	23	264	286	264	286	0.94
2	12	2.3e-05	0.0017	18.4	1.2	1	23	294	316	294	316	0.98
3	12	1e-05	0.00075	19.5	0.2	2	23	324	345	323	345	0.97
4	12	4.7e-06	0.00034	20.6	1.1	1	23	351	373	351	373	0.98
5	12	0.00079	0.058	13.6	1.5	3	23	382	402	380	402	0.97
6	12	3.8e-06	0.00028	20.9	0.6	1	23	408	430	408	430	0.96
7	12	1.1e-05	0.00077	19.5	0.2	1	23	436	458	436	458	0.98
8	12	5.4e-07	4e-05	23.6	1.2	1	23	464	487	464	487	0.96
9	12	2.8e-06	0.00021	21.3	0.5	1	23	493	516	493	516	0.96
10	12	4.4e-06	0.00032	20.7	2.8	1	23	522	544	522	544	0.99
11	12	7e-05	0.0051	16.9	0.4	1	23	550	572	550	572	0.94
12	12	0.00029	0.021	15.0	0.2	1	23	578	602	578	602	0.94

Sequence Information

Coding Sequence: ATGACGGAATCACCAAAAGATTTGTTGTATTGTTTAATatgcaacaataaaatttccaatagAAATACTGTACAAATTTTTATCGAGACATCTAATGACGAAACGGAAAAATCGCTTGTTGATACATTATCTAATGTTTTAGAAGtcgaaataaatcaatataatgttCATTCACGTGTAATATGTAAAAAgtgttataaattaattaatgagTTTGAAGAACTTGAATTTAGAGTGGGTGAAATACGCcaagaaatttttaataattataaagaaacaattgagaaagtaaaaaaagtattgaaactTGATGATGAGTGTAATGATCATGATTATCTTGATGTAGCAGATAATCAAAGTGAAGACAaggatacatataaaaatgacgaTAATGAAAATGTGGAAGAAGTTTATTTAGTTTCTACTAAAGGAGAATCAATAGAGGAACATTTAGATGAATATTTACAAGAGGAAATACATAATGAAGAGGCTGAACAATCCGAATTGGATGAGGAATATATTGACGATCCGTCTGAAGAAAAAACTGAAGATACCGCAGAAAGATCAACAGTAACGACAGAAGAAACTGAAACTGAAACAATAGACGAAATGAAAACGCAAGAGACAAAAAAGGTTAGAACAATGGCCAAAGAAGAATGCATTGATCCTATTGTCGAGAGAGATgatgcaatttattattgtcttttATGCCCAAGTAATGGCGACCGACTGTCCGGTGAtgcaaaagaaataatgacaCATGTTAAAAATGCTCATGATAcacgtttgtatatatgtgatatatgTGGCGTTGATTTTAGAAAACGAAATGAATTATCGATGCATTTGGATGATCATGTTGCAAAAGAAGAGGGTGATTTTCAATGTGAAGTATGTAACAGAATATTTAGTAATTTACGTCTATTTCGAATTCACAAGCGAATACATTATCCTCAAGTTAAATCATGGCCATGTGAAACGTGTGGCAAACGTTATagttcaaaaaatttattggaagAACATGTCAATACTCATATTGGTGTACGACCGTATATTTGTCAAACGTGTGGCAAAGATTTTGCttcaaaatatacatataaagcaCATGTAAAAACTCATGAAGTTCGTCCACGTCCCTTTGGATGTTTACAatgtaataaaacatttttaagccaacaaaatttaaatcagCACGAGCGAACACATCTCGGTGTTAAGGAATATGTTTGTCATCAATGTGGTAAAGCATTTGGTTCGCCACACAATTTAGAAGTACATAATATTGTTCATACAGGATATAAACCGTATATATGTCGAATGTGTGGTAAAGCATTCGCGAGAAAAGCGGAAATACGAGATCATGAAAGAACTCACACGGGTGAAAAACCGTATCAATGTGAATTTTGTGGCGCTACATTTAGTCAACGTTCGAATTTACAATCACATAAACGCGCAACACACTATAATGATAAACGTTATAAATGTGATGATTGTGGCAAAGGATTTAAACGTCGGCGATTATTAGATTATCATATTAAAGCAGCGCACACGGGTGAAAGGCCATATAAATGTGAAACGTGTACTGCAACTTTCGTTTATCCAGAACATTTTAAAAAACATATGCGAATTCACACTGGTGAAAAACCATATTTGTGTGAAGTTTGCGGTAAAGCATTTAATAGCAGAGACAATAGAAATGCACATAGATTTATTCACAGCGATAAAAAACCATATGAATGTTTAGTTTGTGGAATGGGATTTATGCGAAAGCCATTGTTATACACGCATATGCAAACACAGGGTCATTTAAATGATACAATTGTTGTTAATCAGCCAAGATTAACAAAAGATGAAGAAGTTTTAACAATTCCTGAGGGTAATATCCAGTTGATGATGGAAGATGGTGAAACTGAACAaTTAGCCGAAACTGAATTATATGTAGCTGAATTAAAGGATCACATGATAATACAACAAGatggtgaaaatatttatcaggaTGAGAGTGTATTAGATATGCCGTCTGAGGAGACTATTGTACACGAACAGGTTGAACATATGGTTGTTGGTAGTCagatgGCGTTTACTGATGCTGAAGTTATAGAATGTAAACAAAATagtgaagaaaatgaaggaaCGTTTAATTATCATGGAAATggagaaaatgaaacaattgtcATGTCAGAAACATCTGAATACAAAGATATTATTAGTGATAATAAGAATCAAGTGCGATTAGTTCAAATTAGGATTCCATCGGCTAATGGATCTGATGCTAAAGGTTGGTTAAGCCTTGTACAACAGCACAcgtaa
Protein Sequence: MTESPKDLLYCLICNNKISNRNTVQIFIETSNDETEKSLVDTLSNVLEVEINQYNVHSRVICKKCYKLINEFEELEFRVGEIRQEIFNNYKETIEKVKKVLKLDDECNDHDYLDVADNQSEDKDTYKNDDNENVEEVYLVSTKGESIEEHLDEYLQEEIHNEEAEQSELDEEYIDDPSEEKTEDTAERSTVTTEETETETIDEMKTQETKKVRTMAKEECIDPIVERDDAIYYCLLCPSNGDRLSGDAKEIMTHVKNAHDTRLYICDICGVDFRKRNELSMHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHVNTHIGVRPYICQTCGKDFASKYTYKAHVKTHEVRPRPFGCLQCNKTFLSQQNLNQHERTHLGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTKDEEVLTIPEGNIQLMMEDGETEQLAETELYVAELKDHMIIQQDGENIYQDESVLDMPSEETIVHEQVEHMVVGSQMAFTDAEVIECKQNSEENEGTFNYHGNGENETIVMSETSEYKDIISDNKNQVRLVQIRIPSANGSDAKGWLSLVQQHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01560621;
90% Identity: -
80% Identity: -