Dcoc006683.2
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- -
- Assembly
- GCA_963920625.1
- Location
- OY987186.1:9211075-9213885[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.019 1.4 9.3 1.4 1 23 9 31 9 31 0.97 2 14 0.031 2.3 8.6 0.4 2 23 38 62 37 62 0.92 3 14 1.4e-05 0.00099 19.2 0.5 1 23 68 91 68 91 0.98 4 14 6.1e-06 0.00044 20.3 0.4 3 23 99 119 98 119 0.98 5 14 9.2e-05 0.0067 16.6 3.8 3 23 127 147 125 147 0.96 6 14 3.8e-07 2.7e-05 24.1 0.4 1 23 153 175 153 175 0.98 7 14 0.0036 0.26 11.5 1.7 1 23 206 228 206 228 0.97 8 14 0.0037 0.27 11.5 0.5 2 19 236 253 235 256 0.96 9 14 8.4e-07 6.1e-05 23.0 0.3 1 23 670 692 670 692 0.95 10 14 0.00018 0.013 15.6 0.5 1 23 699 722 699 722 0.96 11 14 1.9e-05 0.0014 18.7 0.1 1 23 730 753 730 753 0.97 12 14 2.9e-06 0.00021 21.3 4.3 1 23 759 781 759 781 0.98 13 14 0.00013 0.0094 16.1 2.8 1 23 787 809 787 809 0.98 14 14 1.2e-07 8.7e-06 25.6 1.3 1 23 815 837 815 837 0.98
Sequence Information
- Coding Sequence
- atgtttAGTGATAATACAAACGATTTTATTTGCTCTGTGtgtggaaataaatttcaaaatgaacaTCAATACTACGGACATTTACAAATTCATAGTGGCGAAGTTGCATGGAGATGTAATCAATGTGATAATTCTGTGTCATTTGAATCACAATCAAAATTAAAGgctcatgaaaatttatatcataatttagTTAAACCATATAAATGTTCCGAGTGTAATTTGGTATTTGATAGAGCATCTCAGTTGGATTATCACACGAGAAGTGttcatttaaatgaaaaatctcaATTGTGTCAAATATGTGGAAAGGGATTTTTCAGAAAGGCAGACCTGAAAACTCATTTAAATGTTCATCTTGGTACTAATCAATCCATTTGCGAAATATGTGGACGTAAATTCAATCATGTTTCCAATTTAATTAGACATTGTAGAACTCATgcagGAGTTAAACCATATCCTTGTTCCATTTGTGGAAAGAGATTCACTCAAATAAGTTCACTGGCACGGCATAAAAACATTCATGAAAGAACAATGGAAAATGCATCTGATATTGCAacagaaaaaatattggaaaaaaatgatggggataaaaagaaaataatgaaacgtcGTCATTATTGTAAAACATGCGGTGAAAGTTTTCAATTTGTTGTTCTTTTGCGTCAACACGAAAAAATTcacgtgaaaaaaacaaaatccatTGAGTGTAAATATTGTTgggaaatatttcaaagtcAGGATGCGTTGCAACGGCATTGTTCCACTGAAACATCAATAAATGGACATTGTAACAGAACTATAAagaataatgacaatgaaaaaaagttacttgttaatgataatgagaaaaatttatcgGAGACAATTGTATATGTGCACTCTGAACAGTCAGATGTTCACAATGAATTGCAATCGCAAGATTTGTTCAATCCTACATTACGTGAATTaacacgaaaaataaatgttattgGGATTGATAATGATCGTGatgaaagtataaatatatctgatatattgaattcatataattgcgatgatattgaattttcaaattcagATGGGATTCATAGGGAAAATTGTTATGGAacatcaaaaaaattgattcagCCAGACATTATACCCACAAAAGAATCGcctaataataaatgtttgcATATTGAAGGcagtcaattatttattgaagttTGTGAGTCTGATTATTTGAGAAGTTTAGAATTACATACATTGGAGCTTCAGGAAAATAGTAATGTGGCTTTTTTACAAGAAAATTCTAACATAACTGGAACTGATGGGACCGAAACATTTGTTAATACTACAATAGATAATTCAAGTAGTGATTctgttaaaaaatatcaaggaTTGGATAATAATGGATCAACTTTGCGTTTAGTGCAAACTCACAGTGGTcaacaattttatgaattagaAATTAATCATTTGACTGAGAAGAATTCGGAACAATCTCGAAATAATATACATCCAACGGATGAATCGGTGGAGTTGCGTCtcgttgatgaaaatattcatgatttatgGAGTTTGCAGTCGTCAAATGTACGTAGTGACTTGATTGATTTGATCACCAGTGATGCAACTCATGAAATAGAAGAAGACGATGTGTCTGCCAATTTGGAATTTAATCAAtcgaaaaattcacatttgacTTTAACGGAAGACGATTTCCAGACACATTTAATGGAACAAAATTctacaatattcaataatccAAAGGAAATTGctgatgataataaagataatatcCAAACACCGATGGTGCGTCTGGTGCAAAATGAGGAAGGCGaacaattttttgaattagtTCGAGATCCTATGGATtttcatgatgataataaaaaagaagagagtGAAGTTGATCAAGATGTTTCCAATAAAATTAGTGACGATCCTCCTCCAATTaatgtcgaaaaattttctatgaaaaaaaatacaaagcaAAAAATTACCCGAGAAAAATCTTCACGGGTTAAGGAATGgaaacaaaaatttgaatgtgATGTatgtaataaacaattttcaacAGCATCAAACTTAAAGCAGCACGTGGGAATACATTTTTTAGATCAACAGAAATTCCAATGTAAGGAATGTAGCATTTCATTTGCTTGGAAGTCGACATTAAACAAACATATTGCCAGTAATCATCGACCTGATGGTCCACAAAAGTTTGTATGTGAAATTTGTCCCAAAGTTTATAGCACATTGTCACAAGTGAATgaGCATGTCAAGAGGGATCATCTCAAGGAACGTAATCATGTATGTTCACAATGTGgaaaatctttttttaaaaaattcgatttaAAATCACACATTCGAACTCACACAAATGAACGCCCTTATATTTGTCCAGCGTGTGGGAAAGGTTTCCATCATCAAAGTCACATAATTAGGCATGAGCGTATTCACTCTGGTGAACGTCCATATTCATGTGATTATTGTCAAAAAACATTTACACAACCGGGTACATTAAAAGCTCACCAACAAAGACATCGTGAATTAAGGAAAGTTGATATATTAGATTATCGAATTGATGCAGACGATCCTACTGCTCTAAATGCatcacaaaattaa
- Protein Sequence
- MFSDNTNDFICSVCGNKFQNEHQYYGHLQIHSGEVAWRCNQCDNSVSFESQSKLKAHENLYHNLVKPYKCSECNLVFDRASQLDYHTRSVHLNEKSQLCQICGKGFFRKADLKTHLNVHLGTNQSICEICGRKFNHVSNLIRHCRTHAGVKPYPCSICGKRFTQISSLARHKNIHERTMENASDIATEKILEKNDGDKKKIMKRRHYCKTCGESFQFVVLLRQHEKIHVKKTKSIECKYCWEIFQSQDALQRHCSTETSINGHCNRTIKNNDNEKKLLVNDNEKNLSETIVYVHSEQSDVHNELQSQDLFNPTLRELTRKINVIGIDNDRDESINISDILNSYNCDDIEFSNSDGIHRENCYGTSKKLIQPDIIPTKESPNNKCLHIEGSQLFIEVCESDYLRSLELHTLELQENSNVAFLQENSNITGTDGTETFVNTTIDNSSSDSVKKYQGLDNNGSTLRLVQTHSGQQFYELEINHLTEKNSEQSRNNIHPTDESVELRLVDENIHDLWSLQSSNVRSDLIDLITSDATHEIEEDDVSANLEFNQSKNSHLTLTEDDFQTHLMEQNSTIFNNPKEIADDNKDNIQTPMVRLVQNEEGEQFFELVRDPMDFHDDNKKEESEVDQDVSNKISDDPPPINVEKFSMKKNTKQKITREKSSRVKEWKQKFECDVCNKQFSTASNLKQHVGIHFLDQQKFQCKECSISFAWKSTLNKHIASNHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKERNHVCSQCGKSFFKKFDLKSHIRTHTNERPYICPACGKGFHHQSHIIRHERIHSGERPYSCDYCQKTFTQPGTLKAHQQRHRELRKVDILDYRIDADDPTALNASQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -