Dcoc000388.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- -
- Assembly
- GCA_963920625.1
- Location
- OY987184.1:2673867-2677971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.23 17 5.9 2.2 1 23 367 389 367 389 0.97 2 19 0.044 3.2 8.1 0.5 2 23 426 447 425 447 0.94 3 19 3.4e-06 0.00024 21.1 2.6 1 23 518 540 518 540 0.98 4 19 0.00013 0.0092 16.1 1.1 2 23 544 565 543 565 0.98 5 19 9.2e-05 0.0067 16.6 3.9 1 23 616 638 616 638 0.99 6 19 5.7e-06 0.00041 20.4 2.7 1 23 643 665 643 665 0.96 7 19 0.0092 0.67 10.3 0.3 1 21 671 691 671 695 0.91 8 19 0.00053 0.038 14.2 1.4 2 23 772 793 771 793 0.95 9 19 0.00018 0.013 15.7 5.0 1 23 849 871 849 871 0.97 10 19 0.00025 0.018 15.2 0.7 1 20 876 895 876 897 0.94 11 19 0.043 3.1 8.2 0.6 2 23 908 929 908 929 0.97 12 19 2.6e-05 0.0019 18.3 0.6 2 23 968 989 967 989 0.97 13 19 2.3e-05 0.0017 18.4 1.6 1 23 994 1016 994 1016 0.95 14 19 0.00025 0.018 15.2 1.0 1 23 1022 1044 1022 1044 0.98 15 19 7.1e-06 0.00052 20.1 0.4 1 23 1061 1083 1061 1083 0.95 16 19 1.3e-06 9.6e-05 22.4 0.3 1 23 1089 1111 1089 1111 0.99 17 19 2.4e-05 0.0018 18.4 0.4 1 23 1117 1139 1117 1139 0.98 18 19 0.00069 0.05 13.8 4.2 1 23 1145 1167 1145 1167 0.96 19 19 0.0096 0.7 10.2 0.4 1 20 1173 1192 1173 1194 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGATATTGACACGGCTGACTCGCCACACAATGATGACGATCCAGTGGAATCAACAGTAGATGTTTGTCGTGTTTGTCTCATTGGCAATCTTATTATGAGAGATCTTTTTGTTGATGGCGATGTTGTATCACTTTCCACCAAGGCCATGAGTTTTACTAGCGTGAAGatgtTGCCAGATGATGGTCTACCACCGCAGGTTTGTTGTGAGTGTGCAGATAAATTGGAATCAGCGTATGACTTTAAATTACAAGTGGAACAAGCCGACACAGTGTTGAGAGAACGTTATGACAATCTCAATATTAAAGAGGAACTTTTTTTCAATGAGGTCGAGGTTAATTTAGAAGGTGATAGAACAGACGATGTGTcacaaattgatattgatgcgGAATATGCAGTTACTACAGAAACACTGGATCAAGATGTGAGTGATAAATCAGAATCGTTGATTAAAAACCATTTGGCATTATTGCAAGTTGATAAGCTTGCAACTGAGGAACATCATGTATTGAATCATGATACAATTGTACAAGAGGCTGATGATATTCAGGAAGCAATTATGAAAGAACATATTTTACAATCGGAGGAACAATATATGCATGGAAATGTTCAAAGTGATGAGCAATTAATAGATGAAGAAATTGAATCAGTacaatgtgataataatataaaagatggTGTTATGCAAGAACAAGAAGGTATTATGATTGaagaacataattatataattcaacaggATTATGCATTGTCGAGTGAACAAGAACAAGAATTAATGAATCAGGAAAGTGATGCGAATGATCACGATACTGCAGAATATTTGTCAATGATTGCCgatgatgaaatgaaagataCTGAAAATGATATATCATCGCTTGAACATGATAAATCTGATGAATGTATTGATGATGTTTGCGAGGAAGAACAGGATAATCAAGCATTACTTGAAACACGTAAATGTCGACGTAAATCGTCACGTCGTAGTACAATAGCAATAACAAAAATACCCGAggaagataattattttgagaATTTGAATTTAAGCAGTCGCTTAACTCAATATCAAGTTGAAAAATCTgaagaaaaagttttttttatgtgttatCTGTGTGACgaacaatttttatcaaaaaatgtattgaaagaGCACATGCATTCACATGAAGAAATACGTCAAACATTGAATCGAAAAAAAACACCGGAAAAagtgcaacaaaaaaatatatcaccaTCACCAAAAAGTCAAACACCATCcggaaaaaaagtaaataaatgccCATACTGTGGTAAAGAATATCTTTatgtaatttcattcaataaacaCGTAAAGCAACACCAAAAGAATGAAGACAAAGTAAAAGAATTTTCAGATAGTACACTTCAACACGATGACTCGAttgattttgatgattttgataataatgatacattTGAGGTGATTACTGATAAAATAgatgataatgaagaaaaatataataatgatgagaataacgatgaatatattgaaaatgatagtTTATCAAGTAAACGTAATTGCACGGAATTTTATACTTGTAATGAGTGTCCTGAACAATTTACCTCTAAATCCGATTTTAaaaaacatacaaataaacatacaataaaaaaatgtaatatatgtgATGAAGAATTTGATTCTTTAGATAAATTACGTAATCATCGTACAACTCACGTAATTGAAGGTGTTATAACTGAACAAGATCTGAAAGATGAACTTGCCAATATCtgtaataaagaatataaggaagaaaataatgaatttaaacaaattgataataatgacgtgagtaatttggaatttttaaataaagaattgaataaattcaagtgTCCAAATTGTTCATTGATGTTTGATACGAAAAAAACACTCTGTAAACACTTGGAGACACATGACGGTGTGCGTTATCGATGTAAAATATGCAATGAAGAATTTACACGCAGAGATCACTTGCGCAAGCATGCAGAACAACATGCACAAGTAAAAACATTCAATTGTACTGAATGTAGTAAAATATTTGGTAATGAATTGACACTGAGAAATCATTTAATAGCAACGAATCACAAGACAATTTTACATGGCAAAGAGTATGATCCAAATAAACGGATAAAACGTGTGGCTGCCAAAGCAGcacagaaaataattgataaaattagtACTGAGGATGGTTTAGATGATTCAGAAAGAGATgacgataatgatgaatttatttcgaAAAATGATGCATCTGGAAGTGGAAAAAGTGGTGAACGACTGCAAACATCGCGAAAATTAACCAGTAAAAAAGATCTTGAGTGTGCTACATGTggtaaaaaatgtatttccaAACAGGCATTATCAAAACACATGGAGTATCATGTGAAGGATGATAAGTCTGAGCAAATGGATAgagcaaagaaaaatatggaaacaaaggataaaataaaaaattgcaatacaaTCTTTGGTGATGATagagatgatgatgacgatgatgatgacgatgatgattttGATGGTGGATTAGATTGGCCAATGGACAATCACGAGTGTACAACGTGTAAAAAACGATACagtacaaaaaaatcattattacgACATCAATTACTTCATGAGGAGCCGAATTTCGAATGTGATATTTGTAATGTTAAATTTTATCGAAAGGATAAATTAAAAGCGCACTATGACAAATGTTCAGAAAAAAATCCTAATCAAGTGCGAAAGTGTAATATATGTGGTGATACATttgagaataatgaaatacttCGTGAACATCGATCAAAACATGTTGATGAGGGTATTTTAACTGAAGAAGATTTGCGTGAATTAGAACCTGGATCTGATGAGAGAAAACGTGGAGAAAAAATAGCACGAAAACGACGAGATGATATTGTTGGCTTGGAGTGTACTGAATGTAATAAACAGTATACATCGAGAAAGGGTCTCTTGAGACATATACAAGTGCACGAAGGTAAAAAATATCTCTGTGATATTTGTCCAAAGAAATTTTATCGTCGAgaacatttgaaaattcatgtgGCAAAACACAATATGGTGAAACCGTATAAATGTACACGATGTTCAAAACGATTTATTAAAGAGGAACAATTGGCGGCACACGTGACAAAACATGAGAGAAcattcaagaaaaataaagaaacagaCAGCAGTGcaaaaagatttttatgtgaaatatgTTCAAAGAGCTTTACACAATCTACAACTTTAGTTGCGCATTTGCGTGCACATAATGGAATTAAACCATATGTATGCGAAGTTTGTGCTCGACCCTTTACAACAAATGCCTATTTGAAAATGCACATGCGAACTCACACACAAGAGAGGCCGTATAGCTGTCAATATTGTACTAGAGCTTTTGCCCGAGCTGATACACTCGCAAATCATTTGACTTCGCATACAGGTGAAGCCAAATATCATTGTAAATTTTGTCCGAAGAATTTTCGACGTTTGAAATCACTTAAAGAACATGTTTTCATTCACACCGGACAAAGACCTTATGCTTGTCCAACGTGTGATCGaagatttaataataatggcaGTCGTTATGCACACAGCAAGAGATGCAAACAGAATATGTTGCAAAATCAAATGAGACAGAGTCAAAATCAGACACAACCACCAGCTCCAACTACCATAGTTCAACAGCCACAAAGTCCAATTCAACAGACAATTAGATTGGCTCAAGCAGTTGGACCCACGATGCAAGTTGTACAgtcgaaaaatataaaaacaatcacGATAACCCGTCATCCAGATCAAGTTGGAACGCATCAAGTCATGCAACATCAAGAAATACTTATGCCATTAATTTTACCTCTTGCTGTCACTCTTGCTGATGTTGATGAGGAAGTGATTTTACCGGAaggtacaaaaatatttacaacaacgtaa
- Protein Sequence
- MDAVDIDTADSPHNDDDPVESTVDVCRVCLIGNLIMRDLFVDGDVVSLSTKAMSFTSVKMLPDDGLPPQVCCECADKLESAYDFKLQVEQADTVLRERYDNLNIKEELFFNEVEVNLEGDRTDDVSQIDIDAEYAVTTETLDQDVSDKSESLIKNHLALLQVDKLATEEHHVLNHDTIVQEADDIQEAIMKEHILQSEEQYMHGNVQSDEQLIDEEIESVQCDNNIKDGVMQEQEGIMIEEHNYIIQQDYALSSEQEQELMNQESDANDHDTAEYLSMIADDEMKDTENDISSLEHDKSDECIDDVCEEEQDNQALLETRKCRRKSSRRSTIAITKIPEEDNYFENLNLSSRLTQYQVEKSEEKVFFMCYLCDEQFLSKNVLKEHMHSHEEIRQTLNRKKTPEKVQQKNISPSPKSQTPSGKKVNKCPYCGKEYLYVISFNKHVKQHQKNEDKVKEFSDSTLQHDDSIDFDDFDNNDTFEVITDKIDDNEEKYNNDENNDEYIENDSLSSKRNCTEFYTCNECPEQFTSKSDFKKHTNKHTIKKCNICDEEFDSLDKLRNHRTTHVIEGVITEQDLKDELANICNKEYKEENNEFKQIDNNDVSNLEFLNKELNKFKCPNCSLMFDTKKTLCKHLETHDGVRYRCKICNEEFTRRDHLRKHAEQHAQVKTFNCTECSKIFGNELTLRNHLIATNHKTILHGKEYDPNKRIKRVAAKAAQKIIDKISTEDGLDDSERDDDNDEFISKNDASGSGKSGERLQTSRKLTSKKDLECATCGKKCISKQALSKHMEYHVKDDKSEQMDRAKKNMETKDKIKNCNTIFGDDRDDDDDDDDDDDFDGGLDWPMDNHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPNQVRKCNICGDTFENNEILREHRSKHVDEGILTEEDLRELEPGSDERKRGEKIARKRRDDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCSKRFIKEEQLAAHVTKHERTFKKNKETDSSAKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCTRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQMRQSQNQTQPPAPTTIVQQPQSPIQQTIRLAQAVGPTMQVVQSKNIKTITITRHPDQVGTHQVMQHQEILMPLILPLAVTLADVDEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00996522;
- 90% Identity
- -
- 80% Identity
- -