Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_963920625.1
Location
OY987188.1:5748306-5752092[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-14 8.6e-12 44.7 0.2 3 44 644 685 642 687 0.95

Sequence Information

Coding Sequence
ATGATGACCCTCGGACCAAAAAAGGATGGTGGACCAAATCCTAAATTCTTTGAGTCTGCTGAGGTACTTGCCCAACTTGATGGAGTCAAGCAATGGCTtctaaaaaattgtaaaaaaTATGTTACAACAGATCCACCCACAAATAAAAGTTTGGCTACATTGATAGTACAACTGATTCAATTTCAAGAAGACAATCTTGGTAAAAATGTATCAAAACCACCAATGACCCGACTTcctatgaaatgtTTCCTGGATTTCAAACCGGGTGGCGGCCTATGTCACATATTTGCTACAGCATACAGATTTAAACAGGAGCAAGGATGGCGAAGATTCGATTTTCCTGTTGGAAAATCGAGTTCACGAATGGATCGTGCTATAGAGATGTTAATGGCAACTGAACGTGCACTAATACAAAATAGATGTATGACTGTACCGTGTGTTTATGTTAAACCCGAAGTGGACAAAGCAACTGCATCAAAAGTAAAGGATTCCGTTCGTCGTCATCAAGGAACAATTGCAGAAAATGAAGCAGATGCAACGCACATTGTTTATCCACCAGTTGATCCATTAGATGAAGAATATGCACGACCCTGCATGCGTCGTGATCGTTCTGTTTTACTTCATTGGTATTATTTTCCAGACAGTTATGATTCATGGGTAACAGTCGATTTACCAATTGAATTTCCTGAAAGTGGAACTGGTAGTCCATCGCCAAAAACTACTTATAAAGTTTCAGCGACATGGGCATCAGATCTCGATCAATACAATGAGTGGATGAATGAAGAAGATTATGAAGTTGATGAAAACGGACAAAAACGAGTGCACCGACACAGATTATCAGTTGAAGATCTTATGGCTCCGCCAGCACATCCACCGGCATcagcaaaaaaacaaaaacgtaAACGTTCGCCAAGTCCACCGCCAAAAGCGGGTAAACGCAAGAGCAATCGTGGACCAGGCGGTATTGCTAGTGGCGCAtcctcatcattatcatcgtcatcatcatcatctgcgGCTATAGCAACGCCAAAAAAAACTCGCGCTGGTATTGATGATGAGGAGGATTTAACTCAAGGAATGGAAGATCCACCAGCTGAGCCACGAATCGTCGAAGTAATTGCAAATCCAACAAATCCACCGTCGTCTGGTACGGGAAGTGGCTCAACAGGTTTCGGTAGCAACACATCGAGTAATAAGAAACAAGACAACGAATTGCAGCCATTAAAATCCGGTAATATGGCAGACTTAGATGAACCAATTGAATGTGAAAAGGGATCACAAGGGACTCAAGATCGAGAGGAACGTGATACGAGTAAAGAGCGCGGTGGTGAAAGTGGCAAAGACGAACCCGAAGACAATGTCACTGAACAAACACATCATATAGTTGTACCAAGTTATTCAGCATGGtttgattataattcaattcatacaattgaaaaacgTGCACTATCGGAatttttcaatggaaaaaataaatcaaaaacacCGGAAATTTATTTGGCATATCGTAATTTTATGATAGATACTTATCGATTAAATCCAACTGAATATATAACGTCAACTGCGTGTCGACGTAATTTAGCCGGTGATGTTTGTGCAATAATGCGAGTTCACGCATTTTTGGAACAATGGGGTTTAATTAACTATCAAGTTGATGCTGAATCACGTCCAACACCAATGGGACCACCTCCCACATCgcattttcatgttttatccGATACACCATCGGGACTCGCACCAGTCAATCCAAATCCACCAAAAACACCACAGCCATCCGCTGCTAAAACATTATTGGATCTTGAGAAAAAACCAATTGTCCCTGCTGATGATAAAGCAATTGGTGCCATGACTAATTTCGGCTTAAAACTCGACCAGTATGCAAGAAAACCAGCAGTATTGAAGAATAAACAAGCGGCTGGTGCAACGCGTGATTGGACCGAACaagaaacattattattactcgaAGGCTTGGAATTACATAAAGACGATTGGAATAAAGTTTGTGAGCATGTTGGCTCACGTACACAAGATGAGTGTATTTTACACTTTTTACGTTTACCAATTGAGGATCCGTATTTAGAGGAGGGTGGCCCAGAGGGTTTGGGTCCATTGGCATATCAACCTGTGCCATTTTCAAAAGCTGGTAATCCGGTTATGAGCACTGTTGCATTTTTGGCCTCTGTCGTTGATCCACGAGTTGCTGCGAGTGCGGCAAAAGCCGCCATGGAAGAGTTTGCCGCAATTAAAGATCAAGTGCCGGCTGCTCTGTTAGATCAACATTTGCGTAATGTACAAGCAAGTGCCAATGCCGATGGAAAATTCGATCCCGCCGCAGGATTGGCACAATCCGGAATTGCTGGAACAGGTCCACCAGAACCACCTGAGGAAACTGCAACGAATATACAATCTAGTGTTCCCGCCTCTTCACCACCAGCATCTACGCCTGAGGCTAAAAAAGACGAAGCTGAGAAACCAAAGGATACGACATCAGGTGATATAGCATCACCGACAATGTCACCAGCGGTTGTCCCGAAAAAAGAAGAGGGAACGGAGATTGAACAACGTCCGgatcaaacagaaaaaatggaAGTTGACTCTAAGGAACCTGAAACAGAAAGTAAAACGAAAACTGTCGTTGAAAGTCCCGAAGACATTgaagcaaaagaaaagaaggatAAAGTGGTACGAGATGCCCAACTTCAATCAGCTGCAGCTGCGGCATTGGCCGCTGCTGCTGTTAAAGCAAAACATTTAGCAGCTGTTGAAGAACGCAAGATAAAATCATTGGTGGCATTGTTAGTTGAAACGCAAATGAAGAagttggaaataaaattaagacaTTTCGAGGAATTAGAAACGACGATGGAACGTGAACGTGAAGGTCTAGAGTATCAGAGACAACAACTTATTACTGAACGACAACAATTTCATTTGGAACAATTAAAAGCAGCAGAATTTAGAGCACGACAACAAGCGCATCAACGTTTAGCTCAAGAACAACAGCATCAACAGCAACAGAGCCAGCATCCATCTTGGCAAGCGAATGCACAACagcaaccaccaccaccaccacctcaacctcaacaacaacagcaacaacaatcGACAGCATCACAAGGACAACAACAACCACCAAGTCCACAAGCACAGGCGCAACCCACTGTTGTCCACACCCCTCCACAGCAGGcgtaa
Protein Sequence
MMTLGPKKDGGPNPKFFESAEVLAQLDGVKQWLLKNCKKYVTTDPPTNKSLATLIVQLIQFQEDNLGKNVSKPPMTRLPMKCFLDFKPGGGLCHIFATAYRFKQEQGWRRFDFPVGKSSSRMDRAIEMLMATERALIQNRCMTVPCVYVKPEVDKATASKVKDSVRRHQGTIAENEADATHIVYPPVDPLDEEYARPCMRRDRSVLLHWYYFPDSYDSWVTVDLPIEFPESGTGSPSPKTTYKVSATWASDLDQYNEWMNEEDYEVDENGQKRVHRHRLSVEDLMAPPAHPPASAKKQKRKRSPSPPPKAGKRKSNRGPGGIASGASSSLSSSSSSSAAIATPKKTRAGIDDEEDLTQGMEDPPAEPRIVEVIANPTNPPSSGTGSGSTGFGSNTSSNKKQDNELQPLKSGNMADLDEPIECEKGSQGTQDREERDTSKERGGESGKDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKTLLDLEKKPIVPADDKAIGAMTNFGLKLDQYARKPAVLKNKQAAGATRDWTEQETLLLLEGLELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEGGPEGLGPLAYQPVPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANADGKFDPAAGLAQSGIAGTGPPEPPEETATNIQSSVPASSPPASTPEAKKDEAEKPKDTTSGDIASPTMSPAVVPKKEEGTEIEQRPDQTEKMEVDSKEPETESKTKTVVESPEDIEAKEKKDKVVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLAQEQQHQQQQSQHPSWQANAQQQPPPPPPQPQQQQQQQSTASQGQQQPPSPQAQAQPTVVHTPPQQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00381005;
90% Identity
iTF_01002018;
80% Identity
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