Basic Information

Insect: Dilophus febrilis
Gene Symbol: SK_1
Assembly: GCA_958336335.1
Location: OY284470.1:13162685-13205310[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.22 13 6.9 2.8 1 23 884 906 884 906 0.96

2 9 0.81 46 5.1 0.1 1 23 919 942 919 942 0.93

3 9 0.0054 0.31 12.0 0.2 1 23 961 984 961 984 0.98

4 9 0.00025 0.014 16.2 0.8 1 23 988 1013 988 1013 0.96

5 9 0.023 1.3 10.0 5.5 1 20 1052 1071 1052 1073 0.93

6 9 4.1e-06 0.00023 21.8 1.2 1 23 1080 1102 1080 1102 0.97

7 9 9.7e-05 0.0055 17.5 3.5 1 23 1108 1130 1108 1130 0.99

8 9 0.059 3.4 8.7 4.3 1 23 1136 1158 1136 1158 0.98

9 9 0.00016 0.0094 16.8 2.3 3 23 1166 1187 1165 1187 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.22	13	6.9	2.8	1	23	884	906	884	906	0.96
2	9	0.81	46	5.1	0.1	1	23	919	942	919	942	0.93
3	9	0.0054	0.31	12.0	0.2	1	23	961	984	961	984	0.98
4	9	0.00025	0.014	16.2	0.8	1	23	988	1013	988	1013	0.96
5	9	0.023	1.3	10.0	5.5	1	20	1052	1071	1052	1073	0.93
6	9	4.1e-06	0.00023	21.8	1.2	1	23	1080	1102	1080	1102	0.97
7	9	9.7e-05	0.0055	17.5	3.5	1	23	1108	1130	1108	1130	0.99
8	9	0.059	3.4	8.7	4.3	1	23	1136	1158	1136	1158	0.98
9	9	0.00016	0.0094	16.8	2.3	3	23	1166	1187	1165	1187	0.96

Sequence Information

Coding Sequence: atgaacAGGTTCCATGATGAAGAACACGCGAATTTATTGAATGCAATGTGGCTTATAgcaataacatttttaagCGTTGGTTTTGGTGATATTGTACCGAATACTTATTGTGGACGTGGTATAGCTGTCAGTACTGGAATTATGggTGCTGGTTGTACAGCACTATTAGTTGCAGTCGTATCAAGAAAATTGGAATTGTCACGAGCGGAAAAGCACGTACATAATTTCATGATGGATACACAGTTAACGAAAAGGttaaaaaatgCAGCCGCAAATGTATTACGTGAAACATGgcttatttataaacatacaaGACTTGTAAAACGTGTAAATCCTGGACGTGTACGAACACatcaaagaaaatttttattagcAATTTATGCATTAAGAAAAGTAAAAATGGACCAAAGAAAATTAATGGATAATGCTAATACAATAACAGATATGGCTAAAaCACAAAATACAGTTTATGAAATTGTTTCGGATATGTCATCACGTCAGGATGCCGTTGAAGAACGTATATCCAGTGTAGAGGATAAATTACAAACGTTGCAggaacAATTAGAAGCTCTTCCTGAATTAATCACAAGGTGCCTAACACAACATCAAGATCGAATGGATCAACGAAGAAATTTTCTTCATCCAGATACAGCGGCATCAAGTACATCAATACTCCCAACACCCGTCGTTCCACCACCATTAACTATAGGATCACCATTATTATTACCACATTCAAGAAGTATTCCATCGGCAACAACCCCATCATATCAGTGGCCTACCAGTCCAATATTACCACCAATATCAAGTAGAACACCTCATTTAGTGCCAGAAACATCATTTATACCAACAACAAATTCATCATATTCATCAACGATTATGGGTAGAAATAGTAATTTTGATGGAAGTGGTAGtagtaatttaaataataataataataacaataccTATAGcagtaatattaataataacaataataatagtaatagcACCAATTTAGGCAAcacaacaaattatatatcaacactgtcgtcatcattatcatcaacAACACCGATATCATCAaCAGAATTCCAACGTttCAGAAGAAATGCAAAAGAAGGTCATGGTCCACCGGGACCCCATGGAGGTAAGCCTCCGGGTCCTCCTGGCGGCCCCCCTGGAAACAAACGTGGACCACCACCAACGGGAGATACTTCAACGgATCAAAATGCCGAAGAATTAGATCGATCTAAACGAAGCGCCATGAAACCAAATTCTCCAAATCCACCCACGGGAGATGTACCACccccaccaccaccaccaccaggACCACCAGGATTAATGTCTATCATGAGCCGAGTAAGAAGAAGTGAATTTACACCTCCAGCACCAATACCAGATATACCATCACCACCAGAAGGAATACCACCAATGGGTCGtaTGCGTAGAAGTCCACAAATAATGACACCGTATACCATTCCTCATCACGAATTGGAAATATTGAATAGAATTGCTCGTGAACTAACACCTGAAAATGGAtcattaataaacaagaaaaatatCGCCGCatcacatttattatttaaccaTAATCGTGATAAACGTGAAGCTAAAGGTGTAGaaatggAAAAACTATCGATTGAATTAAGTATTGATGATCCAAATCAAATATGTCGAATTTGTTTATCTACAGAATCAACCCaattatggaatttatttggTAATTCCATTGTTGATGGATACATAATTTCAATACCtgatattatagaatatactTTGGATATTCAGGTAAATGCGTCGGATGGTGGTGGTGAACAATTACCGAAGAAAATATGCGATCAATGTAAAACACAAgtaattcaatattattcatttaaatcaaaaaGTGATCGTATTAATCAAATTTTGAATAACGATACGATTAAATCCAATCATGCATCCTCATTCGAATCATCTTCCAGTCTTCCAAATGACACCTGTAATGAACCGATTgatgataatttattgaaGCCATTAAAAACAGAACATAAAGAAGAATATCTAAGTGTTACAGTGATAAATGGTAATGCTGTTATTAAAAAGaccaaatttaataataatattagtttcgaaaataattcaaattcaacaACGGTTAATAAAAGTGATATTATTAGTAATGTAAAACAACAAGAAACAATAATGGAATACAGCAATGaatttaatgatgatgaaaagaATGAGAATGAAACGGAAAACGGTGAAGATGCCGATGAGGATGATAACGATGACAATAATAACGATGGTGATGTTGATTATATCGATTATGATTCAGATGTGgatgataaaaatgaatacTCCGACAATGAAACTGATAATGAAATCGATAATGGAATAAATGAGAAATACAATATCGATgatgtacaacaacaaatatcaataaaagtaaaagaaaaaaatcaatcaatccAATTAAATGGaaagcaaaatatattttactgtaaaatttgtaaattaaatttgcataatcgaaaacaattttataatcattgtATTACCGAAGAACATTCATTATTTTGTCGAAAAtgttgtaaattatttaaaagtaaagGTTTTTATTATCGCCATCAAAAAGTACACATAAATGATGATAAGGGTGatgataataacaataaagTTAAACAATTAACATTCAATTGTGATGCATGTGATGagaaatgtaataataaagtaGCATACAATCAACATATTCATTTacataaaactataaaattatttgcCGATCAATGTGAATTGTTTCCGTGCAGTGAATGTCTTGTCGTCTATCTAACAAATGACCAATTAATAGCGCATACCGAAAATAAACACTCCAATGaattacaatatattgattatcaatttttaatggaTGGCACTGATGCATACCGATGTGGTATTTGcgatggtaaattatttacatCGTACAATGAATTACAATTACATATAATTACACATTTAACCAGTTTTAAATGTCCAATTACCGATTGCGGTCgtacatatgaaaatattaaacatttaaatttacatataatgcTTAAGCATTCAATAGAACATAGCCAAAATACTCAATTAACATGTCGATTTTGTAATCTGAGCATATTCCCTACGAGCATTGCCTTACAAGATCATATGAATAGGGATTGTGTTGAAAAGAAATTTAACTGTTCGCATTGTGATAAGAAATTTTTCTCACAAAAGGCATTATcacatcattttaattttgtaattaaagaaaaaaaacatatgtgtCAATTGTGTGGTAAAATGTTTACACAACCCGTTGAATTACGAATACATACACGTTCGCATACCGGTGAACGTCCTTACAAATGTACAAAATGCGATAAAAGTTATAAAACATTAAGTACATTTTCGTTACACACGGAAACacataatgataaaaattcatttgagtGTAATGTATGCAAACGAATATTACACACCCGACAATCATATCGAAATCATTTAAAACGGCATACGCAAGAGAAAACGAAAATATGTGAAACATGTGGTAAGAAATTTTTTACCCGATATCATTTACAATTGCATGTGCAAAAGATtcatgaaaaaataaaacacaccACGAATATAGACGATAATATACGTGTAATGAGTTGA
Protein Sequence: MNRFHDEEHANLLNAMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTALLVAVVSRKLELSRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMSSRQDAVEERISSVEDKLQTLQEQLEALPELITRCLTQHQDRMDQRRNFLHPDTAASSTSILPTPVVPPPLTIGSPLLLPHSRSIPSATTPSYQWPTSPILPPISSRTPHLVPETSFIPTTNSSYSSTIMGRNSNFDGSGSSNLNNNNNNNTYSSNINNNNNNSNSTNLGNTTNYISTLSSSLSSTTPISSTEFQRFRRNAKEGHGPPGPHGGKPPGPPGGPPGNKRGPPPTGDTSTDQNAEELDRSKRSAMKPNSPNPPTGDVPPPPPPPPGPPGLMSIMSRVRRSEFTPPAPIPDIPSPPEGIPPMGRMRRSPQIMTPYTIPHHELEILNRIARELTPENGSLINKKNIAASHLLFNHNRDKREAKGVEMEKLSIELSIDDPNQICRICLSTESTQLWNLFGNSIVDGYIISIPDIIEYTLDIQVNASDGGGEQLPKKICDQCKTQVIQYYSFKSKSDRINQILNNDTIKSNHASSFESSSSLPNDTCNEPIDDNLLKPLKTEHKEEYLSVTVINGNAVIKKTKFNNNISFENNSNSTTVNKSDIISNVKQQETIMEYSNEFNDDEKNENETENGEDADEDDNDDNNNDGDVDYIDYDSDVDDKNEYSDNETDNEIDNGINEKYNIDDVQQQISIKVKEKNQSIQLNGKQNIFYCKICKLNLHNRKQFYNHCITEEHSLFCRKCCKLFKSKGFYYRHQKVHINDDKGDDNNNKVKQLTFNCDACDEKCNNKVAYNQHIHLHKTIKLFADQCELFPCSECLVVYLTNDQLIAHTENKHSNELQYIDYQFLMDGTDAYRCGICDGKLFTSYNELQLHIITHLTSFKCPITDCGRTYENIKHLNLHIMLKHSIEHSQNTQLTCRFCNLSIFPTSIALQDHMNRDCVEKKFNCSHCDKKFFSQKALSHHFNFVIKEKKHMCQLCGKMFTQPVELRIHTRSHTGERPYKCTKCDKSYKTLSTFSLHTETHNDKNSFECNVCKRILHTRQSYRNHLKRHTQEKTKICETCGKKFFTRYHLQLHVQKIHEKIKHTTNIDDNIRVMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -