Dfeb009561.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:1545092-1549798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6 3.4e+02 2.4 0.3 1 17 21 37 21 42 0.84 2 12 0.32 18 6.4 0.3 2 23 76 98 75 98 0.93 3 12 0.33 19 6.3 0.6 2 23 168 190 167 190 0.94 4 12 0.00011 0.0064 17.3 0.1 2 23 294 316 293 316 0.94 5 12 0.38 22 6.2 0.3 6 23 373 391 371 391 0.95 6 12 0.62 35 5.5 0.2 3 23 410 431 409 431 0.94 7 12 1e-05 0.00057 20.6 0.3 3 23 544 565 542 565 0.96 8 12 9.3e-06 0.00053 20.7 0.8 1 23 571 593 571 593 0.98 9 12 0.0002 0.012 16.5 2.9 1 23 599 621 599 621 0.99 10 12 0.00086 0.049 14.5 2.7 1 23 627 649 627 649 0.97 11 12 0.00012 0.0067 17.2 3.3 1 23 655 677 655 677 0.98 12 12 0.0026 0.15 13.0 3.7 1 23 683 705 683 705 0.98
Sequence Information
- Coding Sequence
- ATGAAAGtgaatgaaattaaatgtttCGATGTGTTTATTAATTCCGATGGTGTAATTcgatatttttgtttgatttgcAATAGAAATGTTGAAAGTCTCAATCATTTAATACATATGCAACAACATTTCACAGATGTTCCCCTTTTCTACCATCAAATGATTAATAACAATGAATTTACTGCATATCACAAGGAAATTATTATAGCGAAAAATGAAGAACGAATGTCATGTTTCTGGTGCGATCAAGAATTCGATGATCCTCATTTAAGGCTGGAACATATAACCATAAACCATTTGTTGCATTGCACTAAAGATTCAACGGAAAATTGTTCAGACGGAAACGATAAGAGTTTATCACGAAATGTTGAAAGTCTCAATCATTTAGTACATTTGCAACAACATTTCACAGATGTTCCCTTTTTCTACCATCAAATCATTAATGACAATGAATTTACTGCATATCACAAGGAAATTATTATAGCGAAAAATGAAGAACGAATGTCATGTTTCTGGTGCGAACAAGAATTCGATGATCCTCATCTAAGGTTGAAACATATAACCATAAACCATTTGTTGCATTGCACTAAAGATTCAACGGAAAATTGTTCAGACGGAAACGATAAGAGTTTATCACGGTGTTCCACCGAGATAGCTCAAAAAGGtgattcaaaattaataacatCAAACAAATATGACAAAAATGATTCAAAAATTCGTAAATCAAAcaacatacaattaaataatcaattagcaaataatattaatggtATTGAAATTAGCACAAATGCATCAGAATTAccaaataaacaatttatagaaaatgttaatGTTCAAAGAAACCCGAAATATACAAAACGCAAACGAAATAATCAACATATTGTATGTGATATTTGCGGTAAATTATATGTAAGCCAGAAATCGCTGAATAATCATATAATGGAGgtgcatttaaaattaaaaaaATATGTTGAAAGTCGCAAGCATTTAATACATATGCAACAACATTTCACAGATGCTCCCTTTTTCTGCCAACAATACATTGATGATAATGAATTCACTCCATATCAGAAGGAAATTATTGAAGTGAATATTCcatattgtataaattcatCATCTTGTAACCAAACGTTTACCGAActatatgattttctatatcatttaaataagaTACATTATGATAAAACAAATCAGAAGAATGATTGTAGTAAAAAGGAAGAACGAATGTTATGTTTCTGGTGCGATGAAGAATTCGATGATCCTCATCTAAGGTTGGAACATATAACCATAAATCATTTGTTAAACTGCACTAAAGATTCAACAGAAGGTACTTTAGGCGGAAATGATAAGAATTTATCATCGTATCCCACAGAAACAGCTCAAACATTTGATTTAGAAATAATATCATCAAATTTATcgaaaaattcaaacaattatgacaaaaatgtttcaaaaattcGTAAATCAAATAACATACAATTAAACCATCAATTagcaaataatattatagatatcaaaattggaaaaaatacaTCAGGATTATCAAATAAACAAtgtaaagaaaatgtaaacgCTGAAagaaaaccaaaatataaaaaacgcAAACGTAAAATAATTACTCAAAATAGTATATGTGATATTTGTGGTAAGGTGTATGTAAATCGGCATGCGTTAAAAGATCATATAATGCGTGTGcatttaaaactaaaaaagtATTCCTGTTCCGTATGTAATAAGTCATTTTCGCAGGGTTCCTACCTAAAACCACACATGCGAATACATACCGGTGAAAGACCATACGAATGTAAATTATGTGAtcgtaaattttatttatccgGCCATTTATCGGGACACATGAAGcgacataataatattaaaagccattcatgtaatatatgtgaaaagaaattttttagAGTTTCAGATATGCGTGATCATAGAAATGTACATACCGGTGCCAAACCACACCAATGTGATGTTTGTAAAACCCAATTTCGTAAACTGTCAGCATTACGGACTCACCAGCGTTTACACACTGGCGAAAAACCgtatatttgcaaaatatGTAGCAAAAGATTTTCACAATTTGCTGGCTTATATTGTCATATGAAAACacataaatcaaaataa
- Protein Sequence
- MKVNEIKCFDVFINSDGVIRYFCLICNRNVESLNHLIHMQQHFTDVPLFYHQMINNNEFTAYHKEIIIAKNEERMSCFWCDQEFDDPHLRLEHITINHLLHCTKDSTENCSDGNDKSLSRNVESLNHLVHLQQHFTDVPFFYHQIINDNEFTAYHKEIIIAKNEERMSCFWCEQEFDDPHLRLKHITINHLLHCTKDSTENCSDGNDKSLSRCSTEIAQKGDSKLITSNKYDKNDSKIRKSNNIQLNNQLANNINGIEISTNASELPNKQFIENVNVQRNPKYTKRKRNNQHIVCDICGKLYVSQKSLNNHIMEVHLKLKKYVESRKHLIHMQQHFTDAPFFCQQYIDDNEFTPYQKEIIEVNIPYCINSSSCNQTFTELYDFLYHLNKIHYDKTNQKNDCSKKEERMLCFWCDEEFDDPHLRLEHITINHLLNCTKDSTEGTLGGNDKNLSSYPTETAQTFDLEIISSNLSKNSNNYDKNVSKIRKSNNIQLNHQLANNIIDIKIGKNTSGLSNKQCKENVNAERKPKYKKRKRKIITQNSICDICGKVYVNRHALKDHIMRVHLKLKKYSCSVCNKSFSQGSYLKPHMRIHTGERPYECKLCDRKFYLSGHLSGHMKRHNNIKSHSCNICEKKFFRVSDMRDHRNVHTGAKPHQCDVCKTQFRKLSALRTHQRLHTGEKPYICKICSKRFSQFAGLYCHMKTHKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -