Dfeb010144.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:10820142-10823649[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3 1.3e+02 3.7 2.7 2 23 228 250 227 250 0.93 2 15 0.91 52 5.0 0.1 3 23 255 276 254 276 0.96 3 15 0.00084 0.048 14.5 1.7 2 23 302 323 301 324 0.95 4 15 0.067 3.9 8.5 1.2 2 23 333 354 332 354 0.94 5 15 0.016 0.91 10.5 1.7 3 23 410 431 409 431 0.97 6 15 0.0018 0.1 13.5 1.3 1 23 435 457 435 457 0.98 7 15 0.00084 0.048 14.5 2.4 2 23 465 487 464 487 0.95 8 15 0.00035 0.02 15.7 2.5 1 23 492 514 492 514 0.98 9 15 2.9e-05 0.0017 19.1 4.1 2 23 520 541 519 541 0.98 10 15 0.00025 0.014 16.2 0.7 3 23 549 569 547 569 0.95 11 15 0.049 2.8 9.0 6.6 1 23 579 602 579 602 0.93 12 15 0.026 1.5 9.8 6.6 1 23 607 629 607 629 0.98 13 15 1.8e-05 0.001 19.8 2.7 1 23 636 659 636 659 0.97 14 15 4.7e-06 0.00027 21.6 0.4 1 23 665 687 665 687 0.98 15 15 0.0097 0.55 11.2 2.7 1 23 693 716 693 716 0.96
Sequence Information
- Coding Sequence
- ATGACAACCATAGACGCGATTGATTATGATTTAGAAAAAACTTGTAGAATGTGTTTGTATAGTAACAACATGTCAAATCaagaaatgataaaaatatttgaaccTTGTTCTTCAAAAATTACCGTTGATGgtgaattgaaattattaaaatttaaaATTTCACCGAGCGACGGATTACCACAACAAATCTGCACGGATTGTAtgaattgtttaataaatattaataaatttcgtGTGATAGGTCTAGAATCTCAAACAGTTTTAGAACGTTATTTTAAGGATAATTTGGTTAATGCACTTCGAGTACCATCACAACCCCACCAGCAACAATTAATGACTGATGAAATAGTTTGGATTAAATCCGAAGTGGATGACGTTGATAAATTGAATCAATTATTGCCATCAAATGAAAAGCAATATGATGACTATAATGATTACACCGATTTATTACAAACATATGATAGTGATAATGAAATGGTACTTGAAAATGATTTCGAAAAAACTGATATCGTAGTCAATGcagaaaaacatttaaaatctAACGATTTGAAATTGTGTAACGCCAAGGAATTGAAATGTCTAtgtaaatattgtttaaaacattgtattaatatagaattaaaagattATCAACAACAGCAACCAACAGACGAATGTAAATTAGATccaataaatGAAATTAAATGTTTGCATTGTTATTTAAACTGCAAAAATATCGAGGATTTTGTCAAACATACAAATGCTGTTCATCCTGGATTATTGTGTTGGATATGCAAAGAGTTTTATTTGGATAAAACGGAATTAATAATACATTGGAATTCGCAACATGAAAATGGATTTGCCgatgtaattaaattctcaGACCATAGAAAACGTTTACATAAAGacgaatttaaaatgttaCAATGCGATTATTGTGATAAAGaatatttggATAGGTCGTCATTAGGAAAGCATATAAAACGTCATCACAAAAATAGTTCTTTGGAAGTCATTCATTGTGATGAATGTAATAGCAGTTTTGCAACTCGTTATCGCTAtgaaatacataaaaatgcaCATCAAAAATGTACAGGCATCCAGAAAAGTGAAATAAATAACGAGATTGATCCAAGTGAACAAACATCCAAATGGCTTTGTAAATTTTGTGGAAAACATTATGTCATCGGTAAAAAAACAGATTATCAACatcctattgataaatgtaatttagaAAAGGAACCTAATTGCCGACATTGTGTGGAAACATTCAATAACATTGATGACTATATAAAGCatgtaaatacaaaacattctCCTGGTTATACATGTTCCATTTGCAACATGAATTGTTTCGACAAACCAACATTAACAATACATTTGGCTACCCATACCGCTGagGAATGTGTCATAAAGTGTGATGAATGTAACCGAGGTTTTAAAAAACGGCGGTATTTGCTAAAACATAAAAGTCGAATGCATATTATTTCTGAACATGTTTGTGATATTTGTTCCATAAAATTCGATACTTATGAGAAATTTAAGGCGCACATGAAAAGACACACTtggataaaacaaaaatgttcaCATTGTGATAGAACATTTAATCAAAGTTCTCGATTAATACAGCACGAACGAACACATTCCGGCGAACTTACACATCTTTGTAATATTTGTGGAATAGgGTTCATGAATCCAACAACCCTTTCATCACATATGAAGCAACATGAAGATCTATCacttaattcaaataaataccAATGTAAATTTTGTGATAAAGtttataCGGTTTATTCGTCATGgtatcatcatcaacattttTATCATGCCGAGAAAATATTTCGATGTGATAAATGTGATCGAAATTTTATAACAACGAAATCTTTTAAGTGTCACATGAAGTCGCATGATGATGTGGAACGTAAACATAAGTGTCAAGAATGCTCGTTGGCATTTAAACGTAACGCTCATTTGCAAAATCATATCATGAGTGTTCATCTAaagaaaaaaccatttaaatgtTTATCGTGTGATAAGgcatttgcaaaaaaaagcGATTTAAATATTCATGTGCGGGTGCATAGTGGCGACAAACCACATTCCTGTAACTACTGTAATGAATCATTTCGATTGCGAATTGATAAACGCAGTCATGAACGTACCGCTCATACCGatgaaaaaaatagaaataaatga
- Protein Sequence
- MTTIDAIDYDLEKTCRMCLYSNNMSNQEMIKIFEPCSSKITVDGELKLLKFKISPSDGLPQQICTDCMNCLININKFRVIGLESQTVLERYFKDNLVNALRVPSQPHQQQLMTDEIVWIKSEVDDVDKLNQLLPSNEKQYDDYNDYTDLLQTYDSDNEMVLENDFEKTDIVVNAEKHLKSNDLKLCNAKELKCLCKYCLKHCINIELKDYQQQQPTDECKLDPINEIKCLHCYLNCKNIEDFVKHTNAVHPGLLCWICKEFYLDKTELIIHWNSQHENGFADVIKFSDHRKRLHKDEFKMLQCDYCDKEYLDRSSLGKHIKRHHKNSSLEVIHCDECNSSFATRYRYEIHKNAHQKCTGIQKSEINNEIDPSEQTSKWLCKFCGKHYVIGKKTDYQHPIDKCNLEKEPNCRHCVETFNNIDDYIKHVNTKHSPGYTCSICNMNCFDKPTLTIHLATHTAEECVIKCDECNRGFKKRRYLLKHKSRMHIISEHVCDICSIKFDTYEKFKAHMKRHTWIKQKCSHCDRTFNQSSRLIQHERTHSGELTHLCNICGIGFMNPTTLSSHMKQHEDLSLNSNKYQCKFCDKVYTVYSSWYHHQHFYHAEKIFRCDKCDRNFITTKSFKCHMKSHDDVERKHKCQECSLAFKRNAHLQNHIMSVHLKKKPFKCLSCDKAFAKKSDLNIHVRVHSGDKPHSCNYCNESFRLRIDKRSHERTAHTDEKNRNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -